Wall clock time and date at job start Tue Mar 31 2020 05:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47181 * 234.39002 * 3 2 1 5 5 N 1.46498 * 109.47251 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99957 * 269.99906 * 5 4 3 7 7 C 1.50698 * 109.47289 * 270.00217 * 6 5 4 8 8 H 1.07997 * 119.99994 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99798 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00478 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99886 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46940 * 60.00368 * 11 9 7 13 13 H 1.48501 * 109.46996 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47211 * 300.00213 * 11 9 7 15 15 C 1.34772 * 119.99721 * 90.00379 * 5 4 3 16 16 O 1.21291 * 119.99700 * 179.97438 * 15 5 4 17 17 C 1.50696 * 120.00460 * 359.97438 * 15 5 4 18 18 O 1.45199 * 109.47676 * 180.02562 * 17 15 5 19 19 C 1.34705 * 117.00434 * 180.02562 * 18 17 15 20 20 O 1.21470 * 119.99965 * 359.97438 * 19 18 17 21 21 C 1.47726 * 120.00320 * 179.97438 * 19 18 17 22 22 C 1.39631 * 120.15220 * 179.97438 * 21 19 18 23 23 C 1.37942 * 119.84621 * 180.02562 * 22 21 19 24 24 C 1.38367 * 120.15190 * 0.02562 * 23 22 21 25 25 N 1.48020 * 119.84785 * 179.97438 * 24 23 22 26 26 O 1.21803 * 119.99894 * 359.97438 * 25 24 23 27 27 O 1.21799 * 119.99903 * 179.72403 * 25 24 23 28 28 C 1.38365 * 120.30270 * 0.24919 * 24 23 22 29 29 C 1.37945 * 120.15113 * 359.49762 * 28 24 23 30 30 H 1.09008 * 109.46965 * 114.39595 * 3 2 1 31 31 H 1.08993 * 109.47571 * 354.39273 * 3 2 1 32 32 H 1.09002 * 109.46725 * 59.99987 * 4 3 2 33 33 H 1.09002 * 109.46849 * 300.00489 * 4 3 2 34 34 H 1.09000 * 109.47397 * 30.00633 * 6 5 4 35 35 H 1.09008 * 109.47090 * 150.00170 * 6 5 4 36 36 H 0.96994 * 120.00200 * 179.97438 * 10 9 7 37 37 H 1.08996 * 109.47185 * 59.99845 * 17 15 5 38 38 H 1.09007 * 109.47141 * 300.00220 * 17 15 5 39 39 H 1.08000 * 120.07510 * 359.97438 * 22 21 19 40 40 H 1.07998 * 119.92143 * 179.97438 * 23 22 21 41 41 H 1.07999 * 119.92169 * 179.74829 * 28 24 23 42 42 H 1.07997 * 120.07773 * 180.23196 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.8408 1.1728 5 7 4.5826 0.8420 1.1724 6 6 5.3161 -0.1890 1.9108 7 6 5.5672 0.2846 3.3193 8 1 5.2152 1.2561 3.6331 9 6 6.2454 -0.5230 4.2075 10 7 6.6736 -1.7064 3.8255 11 14 6.5572 0.0643 5.9532 12 1 5.2599 0.3274 6.6261 13 1 7.2996 -0.9814 6.7020 14 1 7.3596 1.3133 5.9193 15 6 5.2555 1.7916 0.4929 16 8 6.4684 1.7928 0.4930 17 6 4.5011 2.8519 -0.2671 18 8 5.4437 3.7498 -0.9102 19 6 4.9278 4.7615 -1.6347 20 8 3.7235 4.8899 -1.7271 21 6 5.8267 5.7149 -2.3168 22 6 5.2954 6.7644 -3.0690 23 6 6.1406 7.6507 -3.7037 24 6 7.5120 7.5012 -3.5967 25 7 8.4128 8.4558 -4.2811 26 8 7.9463 9.3701 -4.9370 27 8 9.6204 8.3298 -4.1847 28 6 8.0453 6.4601 -2.8576 29 6 7.2116 5.5696 -2.2135 30 1 2.9711 0.4253 -0.9360 31 1 2.9719 -1.0218 0.1004 32 1 2.7545 0.4162 2.1087 33 1 2.7538 1.8634 1.0723 34 1 4.7278 -1.1063 1.9354 35 1 6.2686 -0.3814 1.4169 36 1 7.1510 -2.2743 4.4503 37 1 3.8738 3.4164 0.4227 38 1 3.8749 2.3799 -1.0244 39 1 4.2252 6.8815 -3.1543 40 1 5.7310 8.4627 -4.2862 41 1 9.1166 6.3468 -2.7816 42 1 7.6291 4.7597 -1.6338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010647004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:32 Heat of formation + Delta-G solvation = -76.088990 kcal Electronic energy + Delta-G solvation = -30399.019107 eV Core-core repulsion = 25733.835958 eV Total energy + Delta-G solvation = -4665.183149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.120 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.35311 -42.00858 -40.80365 -39.99837 -38.07168 -37.76572 -37.62939 -36.70757 -34.87951 -33.58017 -32.63060 -32.22153 -30.81812 -28.81264 -27.94728 -25.36775 -25.05659 -24.32108 -24.16869 -22.30684 -20.54028 -20.35557 -19.87199 -19.42673 -18.88323 -18.68791 -18.42724 -18.19614 -17.80283 -17.60581 -17.05293 -16.40068 -16.19878 -16.04866 -15.95872 -15.71415 -15.05105 -14.99709 -14.86924 -14.57789 -14.31911 -14.25664 -13.82432 -13.78709 -13.59070 -13.56266 -13.19062 -12.95405 -12.83757 -12.73771 -12.62976 -12.51688 -12.42600 -12.35134 -12.18845 -12.08609 -11.99576 -11.77964 -11.68875 -10.91209 -10.70520 -10.57378 -10.57058 -9.57278 -8.17921 -6.29501 -1.63800 -0.19233 -0.17458 0.20833 1.04335 1.10366 1.42109 1.44390 1.50736 1.59181 1.79079 1.84070 2.19241 2.25922 2.44571 3.01593 3.15030 3.19544 3.29436 3.33655 3.54246 3.61719 3.67382 3.90403 3.99542 4.09703 4.13811 4.20124 4.45243 4.53397 4.53797 4.59155 4.81360 4.83385 4.95973 5.01473 5.03052 5.12948 5.25180 5.33617 5.56461 5.83500 6.11601 6.33842 6.37292 6.58426 6.63326 6.79699 7.25770 7.42944 8.88695 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.009671 B = 0.002166 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.696994 B =12921.090982 C =15237.824078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.245 3.755 3 C -0.040 4.040 4 C 0.107 3.893 5 N -0.589 5.589 6 C 0.261 3.739 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.013 3.987 10 N -0.924 5.924 11 Si 0.954 3.046 12 H -0.264 1.264 13 H -0.284 1.284 14 H -0.279 1.279 15 C 0.506 3.494 16 O -0.566 6.566 17 C 0.054 3.946 18 O -0.336 6.336 19 C 0.512 3.488 20 O -0.504 6.504 21 C -0.077 4.077 22 C -0.044 4.044 23 C -0.056 4.056 24 C -0.026 4.026 25 N 0.024 4.976 26 O -0.158 6.158 27 O -0.177 6.177 28 C -0.063 4.063 29 C -0.055 4.055 30 H 0.137 0.863 31 H 0.126 0.874 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.009 0.991 36 H 0.265 0.735 37 H 0.123 0.877 38 H 0.135 0.865 39 H 0.181 0.819 40 H 0.184 0.816 41 H 0.173 0.827 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.456 14.879 -14.972 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.073 4.073 3 C -0.081 4.081 4 C -0.018 4.018 5 N -0.321 5.321 6 C 0.140 3.860 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.780 3.220 12 H -0.189 1.189 13 H -0.210 1.210 14 H -0.205 1.205 15 C 0.293 3.707 16 O -0.445 6.445 17 C -0.023 4.023 18 O -0.251 6.251 19 C 0.356 3.644 20 O -0.393 6.393 21 C -0.078 4.078 22 C -0.062 4.062 23 C -0.075 4.075 24 C -0.109 4.109 25 N 0.542 4.458 26 O -0.376 6.376 27 O -0.390 6.390 28 C -0.081 4.081 29 C -0.074 4.074 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.059 0.941 35 H 0.027 0.973 36 H 0.074 0.926 37 H 0.141 0.859 38 H 0.153 0.847 39 H 0.199 0.801 40 H 0.202 0.798 41 H 0.191 0.809 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.196 14.229 -14.567 21.285 hybrid contribution 1.110 0.017 1.045 1.525 sum -5.086 14.246 -13.521 20.289 Atomic orbital electron populations 1.81271 1.14527 1.10622 1.10317 1.29146 0.94964 0.91540 0.91615 1.19861 0.80075 1.05734 1.02404 1.21647 0.78669 1.02196 0.99238 1.47981 1.06916 1.28644 1.48560 1.18892 0.91712 0.85927 0.89470 1.21711 1.36469 1.02604 0.97221 0.92632 1.25677 0.95288 0.95034 1.02624 1.69999 1.38944 1.10353 1.37079 0.85661 0.78634 0.77741 0.79944 1.18909 1.20991 1.20457 1.20432 0.87731 0.82673 0.79862 1.90726 1.15891 1.74513 1.63344 1.23067 0.90263 0.90304 0.98636 1.86578 1.40582 1.37943 1.60032 1.21138 0.87108 0.79782 0.76387 1.90878 1.16003 1.72835 1.59587 1.19600 0.93335 0.95599 0.99292 1.21481 1.02590 0.90128 0.92013 1.21241 0.88940 0.99982 0.97303 1.21621 0.90998 0.94728 1.03539 1.43910 1.01798 1.00951 0.99120 1.94538 1.80015 1.24704 1.38379 1.94575 0.97547 1.79687 1.67155 1.21221 1.03641 0.90653 0.92620 1.21707 0.91323 0.98337 0.96016 0.84563 0.85649 0.89000 0.87519 0.94072 0.97274 0.92561 0.85911 0.84704 0.80127 0.79834 0.80946 0.81357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.84 18.54 20.01 0.37 -12.47 16 2 C 0.24 4.80 15.43 89.44 1.38 6.18 16 3 C -0.04 -0.59 6.03 28.79 0.17 -0.42 16 4 C 0.11 2.20 5.17 86.38 0.45 2.65 16 5 N -0.59 -18.67 2.46 -826.15 -2.03 -20.70 16 6 C 0.26 11.54 5.16 85.63 0.44 11.99 16 7 C -0.54 -27.42 9.39 25.60 0.24 -27.17 16 8 H 0.06 2.78 7.81 -2.91 -0.02 2.75 16 9 C 0.01 0.70 5.46 84.65 0.46 1.16 16 10 N -0.92 -51.34 13.29 21.45 0.28 -51.06 16 11 Si 0.95 41.81 29.54 68.60 2.03 43.83 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 14 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 15 C 0.51 16.24 7.75 87.66 0.68 16.92 16 16 O -0.57 -24.52 16.08 15.73 0.25 -24.27 16 17 C 0.05 1.12 4.51 71.23 0.32 1.44 16 18 O -0.34 -7.64 9.01 -49.76 -0.45 -8.08 16 19 C 0.51 9.54 7.90 70.33 0.56 10.09 16 20 O -0.50 -10.36 16.14 19.93 0.32 -10.04 16 21 C -0.08 -1.09 5.87 -20.10 -0.12 -1.21 16 22 C -0.04 -0.44 9.60 22.54 0.22 -0.22 16 23 C -0.06 -0.56 9.54 22.23 0.21 -0.35 16 24 C -0.03 -0.38 6.86 36.44 0.25 -0.13 16 25 N 0.02 0.48 4.45 -46.31 -0.21 0.27 16 26 O -0.16 -3.23 18.43 18.88 0.35 -2.88 16 27 O -0.18 -3.92 18.43 18.89 0.35 -3.57 16 28 C -0.06 -0.82 9.54 22.23 0.21 -0.61 16 29 C -0.06 -0.75 9.62 22.54 0.22 -0.54 16 30 H 0.14 1.28 7.22 -2.38 -0.02 1.27 16 31 H 0.13 1.88 8.14 -2.39 -0.02 1.87 16 32 H 0.09 2.12 8.07 -2.39 -0.02 2.10 16 33 H 0.11 1.58 6.44 -2.39 -0.02 1.56 16 34 H 0.04 1.80 8.07 -2.39 -0.02 1.78 16 35 H 0.01 0.48 7.42 -2.38 -0.02 0.46 16 36 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 37 H 0.12 2.10 7.39 -2.39 -0.02 2.08 16 38 H 0.14 1.87 7.18 -2.38 -0.02 1.85 16 39 H 0.18 1.21 7.65 -2.91 -0.02 1.18 16 40 H 0.18 1.09 7.60 -2.91 -0.02 1.06 16 41 H 0.17 1.91 7.60 -2.91 -0.02 1.89 16 42 H 0.17 2.39 7.61 -2.91 -0.02 2.37 16 Total: -1.00 -75.10 392.01 8.05 -67.05 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: 1.10 Total: 2.13 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 5.69 Total: 19.79 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -1.58 Total: -83.95 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: 0.82 Total: -48.84 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -75.10 8.05 -67.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010647004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.043 kcal (2) G-P(sol) polarization free energy of solvation -75.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds