Wall clock time and date at job start Tue Mar 31 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47426 * 2 1 4 4 O 1.42902 * 109.47230 * 239.99565 * 2 1 3 5 5 C 1.35888 * 116.99880 * 86.35205 * 4 2 1 6 6 C 1.39849 * 119.56883 * 354.29594 * 5 4 2 7 7 C 1.35984 * 120.93373 * 180.02562 * 6 5 4 8 8 C 1.40585 * 119.73234 * 359.97438 * 7 6 5 9 9 C 1.40524 * 121.22319 * 179.97438 * 8 7 6 10 10 C 1.36098 * 119.67278 * 180.02562 * 9 8 7 11 11 C 1.39372 * 120.99726 * 359.97438 * 10 9 8 12 12 C 1.36089 * 120.97849 * 359.97438 * 11 10 9 13 13 C 1.40580 * 119.65843 * 0.02562 * 12 11 10 14 14 C 1.36572 * 119.56431 * 174.54703 * 5 4 2 15 15 C 1.50701 * 109.46766 * 120.00100 * 2 1 3 16 16 O 1.21286 * 120.00319 * 119.99838 * 15 2 1 17 17 N 1.34780 * 119.99805 * 299.99453 * 15 2 1 18 18 C 1.39239 * 119.99994 * 185.05034 * 17 15 2 19 19 C 1.39483 * 119.83343 * 213.52276 * 18 17 15 20 20 C 1.36373 * 120.16851 * 179.75894 * 19 18 17 21 21 C 1.40867 * 119.82819 * 0.51482 * 20 19 18 22 22 C 1.41147 * 120.16704 * 179.71780 * 21 20 19 23 23 H 1.08000 * 120.00599 * 206.47823 * 22 21 20 24 24 C 1.39911 * 120.00056 * 26.47881 * 22 21 20 25 25 N 1.30870 * 119.99889 * 14.02844 * 24 22 21 26 26 Si 1.86803 * 120.00217 * 194.03517 * 24 22 21 27 27 H 1.48503 * 109.46819 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47123 * 119.99482 * 26 24 22 29 29 H 1.48501 * 109.46730 * 239.99695 * 26 24 22 30 30 C 1.40874 * 119.67264 * 359.73634 * 21 20 19 31 31 C 1.36372 * 119.82672 * 0.02562 * 30 21 20 32 32 H 1.08998 * 109.47426 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47277 * 300.00482 * 1 2 3 34 34 H 1.09010 * 109.46682 * 60.00229 * 1 2 3 35 35 H 1.08004 * 119.53223 * 0.02562 * 6 5 4 36 36 H 1.08000 * 120.13219 * 179.97438 * 7 6 5 37 37 H 1.08004 * 120.15925 * 0.04642 * 9 8 7 38 38 H 1.08003 * 119.50287 * 180.02562 * 10 9 8 39 39 H 1.07997 * 119.51096 * 180.02562 * 11 10 9 40 40 H 1.08006 * 120.17340 * 180.02562 * 12 11 10 41 41 H 1.08001 * 120.19333 * 0.02562 * 14 5 4 42 42 H 0.96994 * 120.00152 * 5.05551 * 17 15 2 43 43 H 1.07998 * 119.91439 * 0.02562 * 19 18 17 44 44 H 1.08006 * 120.08782 * 180.25038 * 20 19 18 45 45 H 0.96997 * 120.00351 * 179.97438 * 25 24 22 46 46 H 1.08000 * 120.08486 * 179.97438 * 30 21 20 47 47 H 1.08005 * 119.91725 * 179.97438 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1394 0.0690 -2.2969 6 6 1.7007 1.3969 -2.3056 7 6 1.8198 2.1651 -3.4214 8 6 2.3919 1.6210 -4.5846 9 6 2.5298 2.3863 -5.7551 10 6 3.0877 1.8276 -6.8636 11 6 3.5267 0.5048 -6.8572 12 6 3.4104 -0.2664 -5.7419 13 6 2.8392 0.2760 -4.5775 14 6 2.6950 -0.4927 -3.4109 15 6 2.0322 -0.7104 1.2305 16 8 2.7295 -1.6966 1.1193 17 7 1.7067 -0.2499 2.4546 18 6 2.2549 -0.8415 3.5895 19 6 1.5048 -0.9188 4.7629 20 6 2.0332 -1.5012 5.8771 21 6 3.3441 -2.0158 5.8440 22 6 3.9002 -2.6147 6.9948 23 1 4.9708 -2.6207 7.1367 24 6 3.0645 -3.2006 7.9517 25 7 1.8105 -3.4418 7.6656 26 14 3.7387 -3.6386 9.6379 27 1 5.1749 -3.2677 9.7083 28 1 2.9840 -2.8979 10.6804 29 1 3.5933 -5.0989 9.8650 30 6 4.0974 -1.9293 4.6568 31 6 3.5537 -1.3485 3.5492 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5139 -0.8901 35 1 1.2611 1.8182 -1.4136 36 1 1.4764 3.1890 -3.4138 37 1 2.1949 3.4130 -5.7747 38 1 3.1928 2.4184 -7.7616 39 1 3.9663 0.0858 -7.7502 40 1 3.7553 -1.2898 -5.7513 41 1 3.0260 -1.5206 -3.3934 42 1 1.0904 0.4936 2.5449 43 1 0.5013 -0.5202 4.7879 44 1 1.4497 -1.5639 6.7838 45 1 1.2311 -3.8483 8.3289 46 1 5.1032 -2.3213 4.6241 47 1 4.1301 -1.2811 2.6383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012380801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:10 Heat of formation + Delta-G solvation = -20.467125 kcal Electronic energy + Delta-G solvation = -29800.442497 eV Core-core repulsion = 25684.353651 eV Total energy + Delta-G solvation = -4116.088846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.96889 -41.19424 -39.96733 -38.91253 -36.54659 -36.22828 -34.93676 -33.83842 -32.83399 -31.49172 -30.83746 -30.66349 -29.65138 -27.12816 -25.60648 -24.55929 -23.88251 -23.21230 -22.92582 -22.50163 -21.17382 -19.49929 -19.33560 -18.86552 -18.25722 -17.89397 -17.24050 -17.04695 -16.82417 -16.39262 -15.89162 -15.73437 -15.67754 -15.57994 -14.91157 -14.73732 -14.54582 -14.44865 -14.33823 -14.20667 -14.03248 -13.96405 -13.68761 -13.36301 -13.29659 -13.16105 -12.89775 -12.79449 -12.67358 -12.50210 -12.40500 -12.06491 -11.78506 -11.65180 -11.61157 -11.46273 -11.20680 -10.87175 -10.80539 -10.62559 -9.50385 -9.35838 -8.87657 -8.67493 -8.61053 -6.31216 -0.40363 0.05596 0.73534 1.10452 1.10997 1.38516 1.40304 1.54404 1.55441 1.73512 2.04360 2.21702 2.59149 2.74112 3.16480 3.48278 3.66209 3.66709 3.71453 3.83854 3.92254 3.97712 4.06232 4.26591 4.34715 4.37312 4.40492 4.44849 4.46974 4.58121 4.65198 4.81399 4.89617 4.94571 5.03467 5.07838 5.10196 5.12546 5.23363 5.26997 5.27941 5.30069 5.39160 5.59873 5.62395 5.63254 5.75198 5.85174 5.98683 6.05594 6.07533 6.32248 6.35330 6.62074 6.65494 6.91116 6.95574 7.29142 8.33081 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.030005 B = 0.001577 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.943544 B =17747.478797 C =18210.419411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.076 3.924 3 H 0.131 0.869 4 O -0.316 6.316 5 C 0.119 3.881 6 C -0.200 4.200 7 C -0.056 4.056 8 C -0.104 4.104 9 C -0.095 4.095 10 C -0.136 4.136 11 C -0.105 4.105 12 C -0.138 4.138 13 C -0.030 4.030 14 C -0.180 4.180 15 C 0.497 3.503 16 O -0.565 6.565 17 N -0.631 5.631 18 C 0.008 3.992 19 C -0.108 4.108 20 C -0.167 4.167 21 C 0.074 3.926 22 C -0.494 4.494 23 H 0.073 0.927 24 C 0.034 3.966 25 N -0.826 5.826 26 Si 0.986 3.014 27 H -0.260 1.260 28 H -0.259 1.259 29 H -0.268 1.268 30 C -0.233 4.233 31 C -0.091 4.091 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.159 0.841 36 H 0.168 0.832 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.121 0.879 42 H 0.421 0.579 43 H 0.130 0.870 44 H 0.115 0.885 45 H 0.289 0.711 46 H 0.092 0.908 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.670 15.843 -23.327 28.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.016 3.984 3 H 0.149 0.851 4 O -0.230 6.230 5 C 0.074 3.926 6 C -0.218 4.218 7 C -0.073 4.073 8 C -0.104 4.104 9 C -0.113 4.113 10 C -0.154 4.154 11 C -0.123 4.123 12 C -0.156 4.156 13 C -0.030 4.030 14 C -0.199 4.199 15 C 0.285 3.715 16 O -0.443 6.443 17 N -0.278 5.278 18 C -0.085 4.085 19 C -0.128 4.128 20 C -0.187 4.187 21 C 0.071 3.929 22 C -0.524 4.524 23 H 0.092 0.908 24 C -0.181 4.181 25 N -0.452 5.452 26 Si 0.807 3.193 27 H -0.184 1.184 28 H -0.184 1.184 29 H -0.193 1.193 30 C -0.253 4.253 31 C -0.111 4.111 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.176 0.824 36 H 0.186 0.814 37 H 0.173 0.827 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.149 0.851 41 H 0.139 0.861 42 H 0.259 0.741 43 H 0.148 0.852 44 H 0.133 0.867 45 H 0.100 0.900 46 H 0.110 0.890 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.359 14.856 -23.318 28.163 hybrid contribution 0.273 -0.674 0.981 1.222 sum -5.085 14.182 -22.337 26.943 Atomic orbital electron populations 1.22388 0.90024 1.04210 1.06133 1.22309 0.97377 0.97121 0.81548 0.85132 1.86214 1.81613 1.37947 1.17201 1.18969 0.96108 0.91365 0.86127 1.21347 1.05818 0.92727 1.01873 1.21304 0.94860 1.00691 0.90468 1.18422 1.02211 0.93521 0.96260 1.21358 0.98036 1.00453 0.91461 1.21212 0.99108 0.95501 0.99545 1.21220 0.98185 0.94529 0.98342 1.21195 1.00879 1.00910 0.92609 1.17994 0.98001 0.93575 0.93450 1.20289 1.06386 1.01150 0.92107 1.20939 0.80904 0.84437 0.85244 1.90730 1.39299 1.27382 1.86861 1.42682 1.46911 1.35240 1.02935 1.17178 0.93279 1.10349 0.87704 1.20504 0.98602 1.01247 0.92406 1.20965 0.97298 1.02006 0.98451 1.18020 0.92905 0.89840 0.92120 1.19826 0.94974 1.33422 1.04138 0.90838 1.26762 0.94642 0.92970 1.03707 1.69864 1.07281 1.31727 1.36368 0.85101 0.79561 0.78539 0.76141 1.18395 1.18357 1.19294 1.20781 1.00875 1.09914 0.93725 1.20351 0.94264 0.99550 0.96893 0.92439 0.87333 0.88458 0.82370 0.81428 0.82747 0.83294 0.83741 0.85149 0.86077 0.74050 0.85187 0.86748 0.89992 0.88984 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.09 71.98 0.65 -2.17 16 2 C 0.08 1.81 2.64 29.85 0.08 1.89 16 3 H 0.13 2.21 6.20 -2.39 -0.01 2.19 16 4 O -0.32 -9.56 9.30 -73.26 -0.68 -10.24 16 5 C 0.12 3.01 6.56 22.27 0.15 3.15 16 6 C -0.20 -3.49 8.20 22.14 0.18 -3.30 16 7 C -0.06 -0.81 9.76 22.32 0.22 -0.60 16 8 C -0.10 -1.87 5.74 -21.28 -0.12 -2.00 16 9 C -0.10 -1.23 9.77 22.33 0.22 -1.01 16 10 C -0.14 -1.62 9.95 22.04 0.22 -1.40 16 11 C -0.10 -1.47 9.95 22.04 0.22 -1.25 16 12 C -0.14 -2.58 9.77 22.34 0.22 -2.36 16 13 C -0.03 -0.67 5.74 -21.30 -0.12 -0.79 16 14 C -0.18 -4.68 9.68 22.42 0.22 -4.47 16 15 C 0.50 17.31 6.96 87.66 0.61 17.92 16 16 O -0.56 -26.57 14.17 15.99 0.23 -26.35 16 17 N -0.63 -20.40 5.23 -303.10 -1.59 -21.98 16 18 C 0.01 0.36 6.28 38.56 0.24 0.60 16 19 C -0.11 -4.73 9.89 22.13 0.22 -4.51 16 20 C -0.17 -8.64 8.62 22.48 0.19 -8.45 16 21 C 0.07 4.10 5.57 -21.28 -0.12 3.98 16 22 C -0.49 -27.23 9.05 23.39 0.21 -27.02 16 23 H 0.07 3.95 7.88 -2.91 -0.02 3.92 16 24 C 0.03 1.70 5.20 85.24 0.44 2.15 16 25 N -0.83 -43.08 10.86 21.82 0.24 -42.84 16 26 Si 0.99 38.35 29.58 68.60 2.03 40.38 16 27 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 28 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 29 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 30 C -0.23 -12.47 9.74 22.48 0.22 -12.25 16 31 C -0.09 -4.50 8.57 22.13 0.19 -4.32 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 1.16 7.46 -2.39 -0.02 1.15 16 34 H 0.10 1.19 7.03 -2.38 -0.02 1.17 16 35 H 0.16 1.80 5.38 -2.91 -0.02 1.78 16 36 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16 38 H 0.15 0.91 8.06 -2.91 -0.02 0.88 16 39 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 41 H 0.12 3.28 8.06 -2.91 -0.02 3.25 16 42 H 0.42 9.17 8.09 -92.71 -0.75 8.42 16 43 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 44 H 0.11 6.06 6.15 -2.91 -0.02 6.04 16 45 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 46 H 0.09 4.79 8.06 -2.91 -0.02 4.77 16 47 H 0.10 4.84 6.42 -2.91 -0.02 4.83 16 Total: -1.00 -77.04 392.71 4.83 -72.21 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.27 Total: 35.02 kcal Atomic # 6 Polarization: -50.54 SS G_CDS: 4.34 Total: -46.20 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -1.35 Total: -64.83 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.45 Total: -36.59 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -77.04 4.83 -72.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012380801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.740 kcal (2) G-P(sol) polarization free energy of solvation -77.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds