Wall clock time and date at job start Tue Mar 31 2020 05:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47495 * 2 1 4 4 O 1.42901 * 109.46595 * 119.99974 * 2 1 3 5 5 C 1.35884 * 117.00122 * 275.19600 * 4 2 1 6 6 C 1.39848 * 119.56705 * 5.17290 * 5 4 2 7 7 C 1.35979 * 120.93682 * 179.97438 * 6 5 4 8 8 C 1.40594 * 119.72935 * 359.97438 * 7 6 5 9 9 C 1.40528 * 121.22207 * 180.02562 * 8 7 6 10 10 C 1.36099 * 119.67269 * 179.97438 * 9 8 7 11 11 C 1.39372 * 120.99231 * 359.97438 * 10 9 8 12 12 C 1.36089 * 120.98537 * 0.02562 * 11 10 9 13 13 C 1.40577 * 119.65345 * 359.97438 * 12 11 10 14 14 C 1.36568 * 119.57181 * 184.89983 * 5 4 2 15 15 C 1.50706 * 109.47215 * 239.99628 * 2 1 3 16 16 O 1.21277 * 119.99840 * 245.00597 * 15 2 1 17 17 N 1.34771 * 119.99781 * 65.00377 * 15 2 1 18 18 C 1.39232 * 120.00239 * 184.90271 * 17 15 2 19 19 C 1.39485 * 119.83299 * 32.75796 * 18 17 15 20 20 C 1.36375 * 120.16885 * 179.73126 * 19 18 17 21 21 C 1.40861 * 119.82889 * 0.27130 * 20 19 18 22 22 C 1.41162 * 120.16435 * 180.02562 * 21 20 19 23 23 H 1.07999 * 119.99403 * 344.60275 * 22 21 20 24 24 C 1.39897 * 120.00005 * 164.60574 * 22 21 20 25 25 N 1.30878 * 120.00432 * 329.53277 * 24 22 21 26 26 Si 1.86804 * 120.00251 * 149.53232 * 24 22 21 27 27 H 1.48501 * 109.46835 * 94.99488 * 26 24 22 28 28 H 1.48498 * 109.47400 * 214.99899 * 26 24 22 29 29 H 1.48502 * 109.46831 * 334.99937 * 26 24 22 30 30 C 1.40876 * 119.67557 * 0.02562 * 21 20 19 31 31 C 1.36376 * 119.82411 * 359.97438 * 30 21 20 32 32 H 1.08997 * 109.47495 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47164 * 300.00113 * 1 2 3 34 34 H 1.09007 * 109.47122 * 60.00121 * 1 2 3 35 35 H 1.08005 * 119.53302 * 359.97438 * 6 5 4 36 36 H 1.08000 * 120.13971 * 179.97438 * 7 6 5 37 37 H 1.07998 * 120.15757 * 359.95291 * 9 8 7 38 38 H 1.07999 * 119.50250 * 180.02562 * 10 9 8 39 39 H 1.08007 * 119.50587 * 180.02562 * 11 10 9 40 40 H 1.07995 * 120.17096 * 179.97438 * 12 11 10 41 41 H 1.08003 * 120.18708 * 0.02562 * 14 5 4 42 42 H 0.97000 * 120.00269 * 4.89476 * 17 15 2 43 43 H 1.08002 * 119.91362 * 359.97438 * 19 18 17 44 44 H 1.08001 * 120.08301 * 180.29615 * 20 19 18 45 45 H 0.97000 * 120.00495 * 180.02562 * 25 24 22 46 46 H 1.08000 * 120.08647 * 180.02562 * 30 21 20 47 47 H 1.08000 * 119.91162 * 180.02562 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.1084 0.0615 2.3051 6 6 1.6507 1.3829 2.3166 7 6 1.7388 2.1434 3.4403 8 6 2.2969 1.5976 4.6096 9 6 2.4028 2.3552 5.7885 10 6 2.9479 1.7949 6.9026 11 6 3.4039 0.4779 6.8940 12 6 3.3177 -0.2860 5.7711 13 6 2.7605 0.2582 4.6008 14 6 2.6516 -0.5015 3.4245 15 6 2.0323 -0.7105 -1.2305 16 8 2.6529 -1.7468 -1.1214 17 7 1.7920 -0.1943 -2.4520 18 6 2.1658 -0.9005 -3.5921 19 6 2.1348 -2.2950 -3.5859 20 6 2.4943 -2.9935 -4.7006 21 6 2.9032 -2.3033 -5.8585 22 6 3.2764 -3.0192 -7.0164 23 1 3.4901 -4.0759 -6.9524 24 6 3.3694 -2.3599 -8.2468 25 7 2.5998 -1.3316 -8.4981 26 14 4.5922 -2.9471 -9.5311 27 1 3.9124 -3.8678 -10.4773 28 1 5.1277 -1.7790 -10.2754 29 1 5.7087 -3.6614 -8.8614 30 6 2.9380 -0.8950 -5.8551 31 6 2.5756 -0.2102 -4.7328 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.2210 1.8053 1.4202 36 1 1.3817 3.1627 3.4347 37 1 2.0537 3.3769 5.8101 38 1 3.0277 2.3795 7.8073 39 1 3.8320 0.0573 7.7920 40 1 3.6754 -1.3049 5.7790 41 1 2.9980 -1.5243 3.4046 42 1 1.3584 0.6692 -2.5369 43 1 1.8215 -2.8228 -2.6972 44 1 2.4652 -4.0731 -4.6958 45 1 2.6640 -0.8747 -9.3513 46 1 3.2500 -0.3590 -6.7393 47 1 2.6013 0.8695 -4.7288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012380802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:16 Heat of formation + Delta-G solvation = -4.377533 kcal Electronic energy + Delta-G solvation = -29770.650650 eV Core-core repulsion = 25655.259501 eV Total energy + Delta-G solvation = -4115.391149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.02895 -39.98950 -38.82029 -37.19151 -35.76271 -34.53428 -33.36926 -32.98538 -31.80948 -30.14419 -29.58693 -29.06877 -28.80008 -25.56658 -24.34958 -23.84531 -22.81106 -22.24300 -21.60985 -20.77323 -19.67921 -18.54356 -17.77153 -17.53621 -17.37445 -16.58194 -16.03213 -15.83519 -15.53853 -15.22215 -15.01952 -14.71672 -14.25265 -14.01955 -13.99115 -13.66747 -13.56626 -13.46780 -13.28049 -13.06603 -12.71653 -12.59201 -12.36914 -12.14342 -11.97230 -11.93558 -11.62950 -11.47767 -11.38274 -11.14142 -11.01283 -10.94683 -10.86250 -10.57574 -10.18920 -10.07744 -9.74089 -9.52040 -9.13513 -8.71310 -8.64298 -7.91338 -7.57687 -7.16916 -6.93745 -4.30161 0.27836 0.77585 1.80584 2.46381 2.65951 2.77384 2.90232 3.02223 3.07508 3.09648 3.33424 3.80369 3.85289 3.86784 4.31220 4.44280 4.47241 4.55223 4.64085 4.68662 4.76921 4.83721 4.93761 4.96319 5.06322 5.12036 5.28925 5.40809 5.52092 5.58098 5.67751 5.69756 5.86080 5.89695 5.94400 6.07313 6.15978 6.23367 6.26194 6.39909 6.47119 6.67779 6.72873 6.88014 6.95379 7.11555 7.19859 7.26679 7.54164 7.65934 7.86184 7.99079 8.21877 8.23880 8.51897 8.67625 8.81322 8.95821 9.96894 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.001568 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.033704 B =17855.010571 C =18173.254352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.068 3.932 3 H 0.095 0.905 4 O -0.281 6.281 5 C 0.138 3.862 6 C -0.191 4.191 7 C -0.066 4.066 8 C -0.086 4.086 9 C -0.094 4.094 10 C -0.133 4.133 11 C -0.109 4.109 12 C -0.114 4.114 13 C -0.011 4.011 14 C -0.155 4.155 15 C 0.500 3.500 16 O -0.509 6.509 17 N -0.641 5.641 18 C -0.024 4.024 19 C -0.067 4.067 20 C -0.225 4.225 21 C 0.107 3.893 22 C -0.456 4.456 23 H 0.082 0.918 24 C 0.084 3.916 25 N -0.769 5.769 26 Si 0.901 3.099 27 H -0.269 1.269 28 H -0.273 1.273 29 H -0.257 1.257 30 C -0.173 4.173 31 C -0.103 4.103 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.137 0.863 42 H 0.394 0.606 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.283 0.717 46 H 0.119 0.881 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.452 10.596 22.654 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.007 3.993 3 H 0.112 0.888 4 O -0.193 6.193 5 C 0.092 3.908 6 C -0.209 4.209 7 C -0.084 4.084 8 C -0.087 4.087 9 C -0.112 4.112 10 C -0.151 4.151 11 C -0.127 4.127 12 C -0.131 4.131 13 C -0.011 4.011 14 C -0.174 4.174 15 C 0.284 3.716 16 O -0.384 6.384 17 N -0.285 5.285 18 C -0.116 4.116 19 C -0.087 4.087 20 C -0.245 4.245 21 C 0.104 3.896 22 C -0.483 4.483 23 H 0.100 0.900 24 C -0.138 4.138 25 N -0.393 5.393 26 Si 0.724 3.276 27 H -0.194 1.194 28 H -0.198 1.198 29 H -0.181 1.181 30 C -0.193 4.193 31 C -0.123 4.123 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.228 0.772 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.137 0.863 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.059 9.796 22.526 24.754 hybrid contribution 0.167 0.548 -0.775 0.963 sum -2.892 10.343 21.751 24.258 Atomic orbital electron populations 1.22346 0.92700 1.04660 1.03583 1.22244 0.95627 0.96909 0.84476 0.88788 1.86269 1.80689 1.36813 1.15568 1.18735 0.95013 0.90146 0.86872 1.21164 1.05318 0.94170 1.00284 1.20877 0.96706 0.99366 0.91498 1.18062 1.02030 0.93895 0.94678 1.20987 0.98714 0.99300 0.92170 1.20799 1.00156 0.95621 0.98497 1.20860 0.99284 0.94297 0.98218 1.21008 0.99861 1.00167 0.92114 1.17778 0.97201 0.92718 0.93432 1.20188 1.05240 1.01340 0.90613 1.19895 0.81197 0.86662 0.83811 1.90732 1.38589 1.23208 1.85834 1.42780 1.59284 1.22274 1.04180 1.17031 1.16968 0.91000 0.86569 1.20256 0.99146 0.92045 0.97283 1.20544 1.11329 0.97831 0.94826 1.17636 0.87820 0.92048 0.92068 1.19590 1.39910 0.97146 0.91698 0.90011 1.25995 0.94228 0.93924 0.99606 1.69927 1.28658 1.17172 1.23501 0.86426 0.81761 0.79546 0.79877 1.19397 1.19835 1.18073 1.20825 1.06791 0.94384 0.97256 1.20151 1.01560 0.97087 0.93507 0.90483 0.90913 0.90056 0.84845 0.85066 0.85708 0.86131 0.86008 0.85407 0.84528 0.77237 0.87980 0.88735 0.90562 0.86341 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.11 37.16 0.34 -1.42 16 2 C 0.07 0.87 2.64 -27.88 -0.07 0.79 16 3 H 0.09 0.95 6.27 -51.93 -0.33 0.62 16 4 O -0.28 -4.19 9.31 -39.24 -0.37 -4.55 16 5 C 0.14 1.74 6.55 -39.58 -0.26 1.48 16 6 C -0.19 -1.90 8.13 -39.79 -0.32 -2.22 16 7 C -0.07 -0.59 9.76 -39.50 -0.39 -0.98 16 8 C -0.09 -0.86 5.74 -106.81 -0.61 -1.48 16 9 C -0.09 -0.76 9.77 -39.49 -0.39 -1.14 16 10 C -0.13 -0.99 9.95 -39.93 -0.40 -1.39 16 11 C -0.11 -0.85 9.95 -39.93 -0.40 -1.25 16 12 C -0.11 -1.05 9.77 -39.47 -0.39 -1.43 16 13 C -0.01 -0.12 5.74 -106.84 -0.61 -0.74 16 14 C -0.15 -1.89 9.68 -39.35 -0.38 -2.27 16 15 C 0.50 8.83 6.91 -10.98 -0.08 8.75 16 16 O -0.51 -11.49 14.10 -14.30 -0.20 -11.69 16 17 N -0.64 -11.03 5.27 -9.74 -0.05 -11.09 16 18 C -0.02 -0.53 6.30 -83.57 -0.53 -1.06 16 19 C -0.07 -1.63 8.58 -39.79 -0.34 -1.98 16 20 C -0.23 -5.75 9.74 -39.26 -0.38 -6.13 16 21 C 0.11 2.86 5.64 -106.80 -0.60 2.25 16 22 C -0.46 -11.95 8.98 -37.85 -0.34 -12.29 16 23 H 0.08 2.08 8.00 -52.49 -0.42 1.66 16 24 C 0.08 2.04 4.92 -17.34 -0.09 1.96 16 25 N -0.77 -19.01 11.19 55.55 0.62 -18.39 16 26 Si 0.90 18.01 29.65 -169.99 -5.04 12.97 16 27 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 28 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 29 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 30 C -0.17 -4.39 8.76 -39.26 -0.34 -4.73 16 31 C -0.10 -2.32 9.89 -39.79 -0.39 -2.72 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.60 6.89 -51.93 -0.36 0.24 16 34 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.13 1.04 5.34 -52.48 -0.28 0.76 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 42 H 0.39 5.12 8.76 -40.82 -0.36 4.77 16 43 H 0.10 2.46 6.33 -52.49 -0.33 2.12 16 44 H 0.09 2.30 8.06 -52.49 -0.42 1.87 16 45 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 46 H 0.12 3.05 5.99 -52.49 -0.31 2.74 16 47 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 393.94 15.07 5.94 5.94 Total: -1.00 -32.00 393.94 -11.82 -43.82 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.75 Total: 10.98 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -6.97 Total: -27.99 kcal Atomic # 7 Polarization: -30.05 SS G_CDS: 0.57 Total: -29.48 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.57 Total: -16.24 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.04 Total: 12.97 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.00 -11.82 -43.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012380802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.440 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds