Wall clock time and date at job start Tue Mar 31 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47495 * 2 1 4 4 O 1.42901 * 109.46595 * 119.99974 * 2 1 3 5 5 C 1.35884 * 117.00122 * 275.19600 * 4 2 1 6 6 C 1.39848 * 119.56705 * 5.17290 * 5 4 2 7 7 C 1.35979 * 120.93682 * 179.97438 * 6 5 4 8 8 C 1.40594 * 119.72935 * 359.97438 * 7 6 5 9 9 C 1.40528 * 121.22207 * 180.02562 * 8 7 6 10 10 C 1.36099 * 119.67269 * 179.97438 * 9 8 7 11 11 C 1.39372 * 120.99231 * 359.97438 * 10 9 8 12 12 C 1.36089 * 120.98537 * 0.02562 * 11 10 9 13 13 C 1.40577 * 119.65345 * 359.97438 * 12 11 10 14 14 C 1.36568 * 119.57181 * 184.89983 * 5 4 2 15 15 C 1.50706 * 109.47215 * 239.99628 * 2 1 3 16 16 O 1.21277 * 119.99840 * 245.00597 * 15 2 1 17 17 N 1.34771 * 119.99781 * 65.00377 * 15 2 1 18 18 C 1.39232 * 120.00239 * 184.90271 * 17 15 2 19 19 C 1.39485 * 119.83299 * 32.75796 * 18 17 15 20 20 C 1.36375 * 120.16885 * 179.73126 * 19 18 17 21 21 C 1.40861 * 119.82889 * 0.27130 * 20 19 18 22 22 C 1.41162 * 120.16435 * 180.02562 * 21 20 19 23 23 H 1.07999 * 119.99403 * 344.60275 * 22 21 20 24 24 C 1.39897 * 120.00005 * 164.60574 * 22 21 20 25 25 N 1.30878 * 120.00432 * 329.53277 * 24 22 21 26 26 Si 1.86804 * 120.00251 * 149.53232 * 24 22 21 27 27 H 1.48501 * 109.46835 * 94.99488 * 26 24 22 28 28 H 1.48498 * 109.47400 * 214.99899 * 26 24 22 29 29 H 1.48502 * 109.46831 * 334.99937 * 26 24 22 30 30 C 1.40876 * 119.67557 * 0.02562 * 21 20 19 31 31 C 1.36376 * 119.82411 * 359.97438 * 30 21 20 32 32 H 1.08997 * 109.47495 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47164 * 300.00113 * 1 2 3 34 34 H 1.09007 * 109.47122 * 60.00121 * 1 2 3 35 35 H 1.08005 * 119.53302 * 359.97438 * 6 5 4 36 36 H 1.08000 * 120.13971 * 179.97438 * 7 6 5 37 37 H 1.07998 * 120.15757 * 359.95291 * 9 8 7 38 38 H 1.07999 * 119.50250 * 180.02562 * 10 9 8 39 39 H 1.08007 * 119.50587 * 180.02562 * 11 10 9 40 40 H 1.07995 * 120.17096 * 179.97438 * 12 11 10 41 41 H 1.08003 * 120.18708 * 0.02562 * 14 5 4 42 42 H 0.97000 * 120.00269 * 4.89476 * 17 15 2 43 43 H 1.08002 * 119.91362 * 359.97438 * 19 18 17 44 44 H 1.08001 * 120.08301 * 180.29615 * 20 19 18 45 45 H 0.97000 * 120.00495 * 180.02562 * 25 24 22 46 46 H 1.08000 * 120.08647 * 180.02562 * 30 21 20 47 47 H 1.08000 * 119.91162 * 180.02562 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.1084 0.0615 2.3051 6 6 1.6507 1.3829 2.3166 7 6 1.7388 2.1434 3.4403 8 6 2.2969 1.5976 4.6096 9 6 2.4028 2.3552 5.7885 10 6 2.9479 1.7949 6.9026 11 6 3.4039 0.4779 6.8940 12 6 3.3177 -0.2860 5.7711 13 6 2.7605 0.2582 4.6008 14 6 2.6516 -0.5015 3.4245 15 6 2.0323 -0.7105 -1.2305 16 8 2.6529 -1.7468 -1.1214 17 7 1.7920 -0.1943 -2.4520 18 6 2.1658 -0.9005 -3.5921 19 6 2.1348 -2.2950 -3.5859 20 6 2.4943 -2.9935 -4.7006 21 6 2.9032 -2.3033 -5.8585 22 6 3.2764 -3.0192 -7.0164 23 1 3.4901 -4.0759 -6.9524 24 6 3.3694 -2.3599 -8.2468 25 7 2.5998 -1.3316 -8.4981 26 14 4.5922 -2.9471 -9.5311 27 1 3.9124 -3.8678 -10.4773 28 1 5.1277 -1.7790 -10.2754 29 1 5.7087 -3.6614 -8.8614 30 6 2.9380 -0.8950 -5.8551 31 6 2.5756 -0.2102 -4.7328 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.2210 1.8053 1.4202 36 1 1.3817 3.1627 3.4347 37 1 2.0537 3.3769 5.8101 38 1 3.0277 2.3795 7.8073 39 1 3.8320 0.0573 7.7920 40 1 3.6754 -1.3049 5.7790 41 1 2.9980 -1.5243 3.4046 42 1 1.3584 0.6692 -2.5369 43 1 1.8215 -2.8228 -2.6972 44 1 2.4652 -4.0731 -4.6958 45 1 2.6640 -0.8747 -9.3513 46 1 3.2500 -0.3590 -6.7393 47 1 2.6013 0.8695 -4.7288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012380802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:15 Heat of formation + Delta-G solvation = -20.100070 kcal Electronic energy + Delta-G solvation = -29771.332431 eV Core-core repulsion = 25655.259501 eV Total energy + Delta-G solvation = -4116.072929 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.95972 -41.17793 -39.95803 -38.89366 -36.54845 -36.23512 -34.97374 -33.84417 -32.83303 -31.46072 -30.84325 -30.72537 -29.65572 -27.15737 -25.56582 -24.55292 -23.87691 -23.24770 -22.91698 -22.45525 -21.16836 -19.48152 -19.35716 -18.85777 -18.25813 -17.87291 -17.22770 -17.00575 -16.79409 -16.50926 -15.98603 -15.73961 -15.68239 -15.46711 -14.96044 -14.73695 -14.53355 -14.40164 -14.35266 -14.19308 -14.01175 -13.97337 -13.76870 -13.44059 -13.30882 -13.18239 -12.82454 -12.72235 -12.68765 -12.46938 -12.32402 -12.06380 -11.92305 -11.66778 -11.60931 -11.57127 -11.24900 -10.83332 -10.74673 -10.46601 -9.49874 -9.35559 -9.02225 -8.76294 -8.67101 -6.24626 -0.40086 0.05906 0.75949 1.10829 1.12815 1.35267 1.40426 1.52955 1.59477 1.73831 2.04347 2.18512 2.61088 2.64506 3.16708 3.49589 3.66682 3.68197 3.72069 3.84891 3.92205 3.98206 4.06390 4.27165 4.34961 4.37873 4.40684 4.46292 4.47228 4.57623 4.64522 4.81562 4.89975 4.94735 5.03553 5.06733 5.09692 5.13643 5.23509 5.26646 5.27255 5.30402 5.41512 5.60029 5.61574 5.62617 5.75329 5.85245 6.00188 6.05636 6.07612 6.31507 6.34946 6.60037 6.67633 6.87587 6.96194 7.31651 8.17640 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.001568 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.033704 B =17855.010571 C =18173.254352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.077 3.923 3 H 0.131 0.869 4 O -0.316 6.316 5 C 0.119 3.881 6 C -0.200 4.200 7 C -0.056 4.056 8 C -0.104 4.104 9 C -0.096 4.096 10 C -0.136 4.136 11 C -0.105 4.105 12 C -0.138 4.138 13 C -0.030 4.030 14 C -0.180 4.180 15 C 0.497 3.503 16 O -0.565 6.565 17 N -0.629 5.629 18 C -0.010 4.010 19 C -0.080 4.080 20 C -0.248 4.248 21 C 0.078 3.922 22 C -0.496 4.496 23 H 0.074 0.926 24 C 0.049 3.951 25 N -0.794 5.794 26 Si 0.975 3.025 27 H -0.259 1.259 28 H -0.259 1.259 29 H -0.264 1.264 30 C -0.192 4.192 31 C -0.099 4.099 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.159 0.841 36 H 0.168 0.832 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.420 0.580 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.296 0.704 46 H 0.112 0.888 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.000 14.452 24.042 28.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.017 3.983 3 H 0.148 0.852 4 O -0.229 6.229 5 C 0.074 3.926 6 C -0.218 4.218 7 C -0.073 4.073 8 C -0.104 4.104 9 C -0.113 4.113 10 C -0.154 4.154 11 C -0.123 4.123 12 C -0.156 4.156 13 C -0.030 4.030 14 C -0.199 4.199 15 C 0.285 3.715 16 O -0.444 6.444 17 N -0.275 5.275 18 C -0.103 4.103 19 C -0.100 4.100 20 C -0.269 4.269 21 C 0.075 3.925 22 C -0.524 4.524 23 H 0.092 0.908 24 C -0.171 4.171 25 N -0.417 5.417 26 Si 0.795 3.205 27 H -0.183 1.183 28 H -0.183 1.183 29 H -0.188 1.188 30 C -0.211 4.211 31 C -0.119 4.119 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.176 0.824 36 H 0.185 0.815 37 H 0.172 0.828 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.258 0.742 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.130 0.870 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.646 13.700 23.937 27.820 hybrid contribution 0.313 -0.598 -0.948 1.164 sum -3.333 13.102 22.989 26.670 Atomic orbital electron populations 1.22369 0.90239 1.04090 1.05984 1.22271 0.97149 0.97213 0.81630 0.85191 1.86214 1.81534 1.38525 1.16669 1.18967 0.96171 0.91452 0.85974 1.21352 1.05707 0.92904 1.01810 1.21303 0.94975 1.00632 0.90428 1.18424 1.02227 0.93616 0.96151 1.21356 0.98129 1.00445 0.91389 1.21211 0.99096 0.95533 0.99532 1.21220 0.98147 0.94573 0.98347 1.21192 1.00951 1.00922 0.92500 1.17989 0.98021 0.93624 0.93375 1.20285 1.06577 1.01258 0.91801 1.20868 0.79660 0.85900 0.85113 1.90713 1.41004 1.25876 1.86766 1.42628 1.59141 1.22915 1.02856 1.17081 1.14730 0.90513 0.88022 1.20351 0.99637 0.93458 0.96595 1.20650 1.12716 0.97913 0.95578 1.17960 0.88787 0.93148 0.92629 1.19787 1.42285 0.97266 0.93029 0.90828 1.26760 0.95341 0.93961 1.00990 1.69913 1.29276 1.17840 1.24712 0.85311 0.78733 0.79438 0.77016 1.18325 1.18251 1.18792 1.20872 1.08099 0.93982 0.98194 1.20446 0.99992 0.98963 0.92472 0.92605 0.88407 0.87660 0.82393 0.81455 0.82778 0.83311 0.83740 0.85119 0.86037 0.74236 0.88516 0.89237 0.89335 0.87020 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.11 71.98 0.66 -2.34 16 2 C 0.08 1.85 2.64 29.85 0.08 1.93 16 3 H 0.13 2.17 6.27 -2.39 -0.01 2.16 16 4 O -0.32 -9.55 9.31 -73.26 -0.68 -10.24 16 5 C 0.12 3.00 6.55 22.27 0.15 3.14 16 6 C -0.20 -3.48 8.13 22.13 0.18 -3.30 16 7 C -0.06 -0.82 9.76 22.32 0.22 -0.60 16 8 C -0.10 -1.87 5.74 -21.28 -0.12 -1.99 16 9 C -0.10 -1.23 9.77 22.33 0.22 -1.01 16 10 C -0.14 -1.61 9.95 22.04 0.22 -1.39 16 11 C -0.11 -1.46 9.95 22.04 0.22 -1.24 16 12 C -0.14 -2.55 9.77 22.34 0.22 -2.33 16 13 C -0.03 -0.66 5.74 -21.30 -0.12 -0.78 16 14 C -0.18 -4.65 9.68 22.42 0.22 -4.43 16 15 C 0.50 17.39 6.91 87.66 0.61 17.99 16 16 O -0.57 -26.46 14.10 15.97 0.23 -26.24 16 17 N -0.63 -20.69 5.27 -303.12 -1.60 -22.29 16 18 C -0.01 -0.46 6.30 38.57 0.24 -0.22 16 19 C -0.08 -4.05 8.58 22.14 0.19 -3.86 16 20 C -0.25 -13.42 9.74 22.48 0.22 -13.21 16 21 C 0.08 4.32 5.64 -21.27 -0.12 4.20 16 22 C -0.50 -27.20 8.98 23.39 0.21 -26.99 16 23 H 0.07 3.97 8.00 -2.91 -0.02 3.95 16 24 C 0.05 2.42 4.92 85.24 0.42 2.84 16 25 N -0.79 -39.54 11.19 21.82 0.24 -39.30 16 26 Si 0.98 37.18 29.65 68.60 2.03 39.22 16 27 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 28 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 29 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 30 C -0.19 -9.91 8.76 22.48 0.20 -9.71 16 31 C -0.10 -4.39 9.89 22.14 0.22 -4.17 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.28 6.89 -2.39 -0.02 1.26 16 34 H 0.10 1.34 8.10 -2.38 -0.02 1.32 16 35 H 0.16 1.81 5.34 -2.91 -0.02 1.79 16 36 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 37 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16 38 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 39 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.12 3.26 8.06 -2.91 -0.02 3.23 16 42 H 0.42 9.52 8.76 -92.71 -0.81 8.71 16 43 H 0.10 4.91 6.33 -2.91 -0.02 4.89 16 44 H 0.09 4.71 8.06 -2.91 -0.02 4.69 16 45 H 0.30 12.97 8.30 -92.71 -0.77 12.20 16 46 H 0.11 5.85 5.99 -2.91 -0.02 5.83 16 47 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -75.55 393.94 4.74 -70.81 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.21 Total: 35.49 kcal Atomic # 6 Polarization: -51.76 SS G_CDS: 4.31 Total: -47.46 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -1.35 Total: -61.59 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.46 Total: -36.47 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.22 kcal Total: -75.55 4.74 -70.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012380802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.709 kcal (2) G-P(sol) polarization free energy of solvation -75.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds