Wall clock time and date at job start Tue Mar 31 2020 05:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.70037 * 2 1 4 4 C 1.53617 * 109.74292 * 239.44686 * 2 1 3 5 5 C 1.53037 * 109.24654 * 295.12234 * 4 2 1 6 6 C 1.53038 * 109.53790 * 298.50952 * 5 4 2 7 7 C 1.53194 * 109.31341 * 61.36079 * 6 5 4 8 8 H 1.08997 * 109.58811 * 65.15466 * 7 6 5 9 9 C 1.53003 * 109.58938 * 185.57912 * 7 6 5 10 10 N 1.46924 * 108.77823 * 305.36951 * 7 6 5 11 11 C 1.34773 * 120.63259 * 233.58846 * 10 7 6 12 12 O 1.21286 * 120.00203 * 354.20125 * 11 10 7 13 13 C 1.50703 * 120.00275 * 174.20497 * 11 10 7 14 14 O 1.42902 * 109.47259 * 179.97438 * 13 11 10 15 15 C 1.35701 * 117.00205 * 180.02562 * 14 13 11 16 16 C 1.39011 * 119.90691 * 180.02562 * 15 14 13 17 17 C 1.37671 * 120.10194 * 180.02562 * 16 15 14 18 18 C 1.39834 * 119.89748 * 359.97438 * 17 16 15 19 19 C 1.47420 * 120.09183 * 180.02562 * 18 17 16 20 20 O 1.21534 * 119.99974 * 359.97438 * 19 18 17 21 21 O 1.34767 * 119.99632 * 179.97438 * 19 18 17 22 22 C 1.34867 * 117.00095 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99458 * 359.97438 * 22 21 19 24 24 C 1.38791 * 120.00207 * 180.02562 * 22 21 19 25 25 N 1.31429 * 120.00138 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00039 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47379 * 89.99890 * 26 24 22 28 28 H 1.48497 * 109.47343 * 209.99696 * 26 24 22 29 29 H 1.48495 * 109.47269 * 329.99746 * 26 24 22 30 30 C 1.39821 * 119.80768 * 0.27209 * 18 17 16 31 31 C 1.37670 * 119.90254 * 359.49067 * 30 18 17 32 32 H 1.09004 * 109.47398 * 299.64814 * 1 2 3 33 33 H 1.09005 * 109.47127 * 59.65033 * 1 2 3 34 34 H 1.08997 * 109.47441 * 179.64640 * 1 2 3 35 35 H 1.09000 * 109.63759 * 175.12389 * 4 2 1 36 36 H 1.09006 * 109.43028 * 54.99048 * 4 2 1 37 37 H 1.08995 * 109.46745 * 178.48596 * 5 4 2 38 38 H 1.09005 * 109.45860 * 58.52322 * 5 4 2 39 39 H 1.09002 * 109.49755 * 301.41337 * 6 5 4 40 40 H 1.08998 * 109.50150 * 181.31258 * 6 5 4 41 41 H 1.09000 * 109.46725 * 185.08562 * 9 7 6 42 42 H 1.08997 * 109.47159 * 305.08458 * 9 7 6 43 43 H 1.08999 * 109.46926 * 65.08365 * 9 7 6 44 44 H 1.09005 * 109.47001 * 59.99926 * 13 11 10 45 45 H 1.09000 * 109.47054 * 299.99870 * 13 11 10 46 46 H 1.08007 * 119.95222 * 0.02562 * 16 15 14 47 47 H 1.08001 * 120.05561 * 179.97438 * 17 16 15 48 48 H 0.97001 * 119.99985 * 180.02562 * 25 24 22 49 49 H 1.08001 * 120.04867 * 179.70365 * 30 18 17 50 50 H 1.08003 * 119.95119 * 180.22953 * 31 30 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0489 -0.7350 -1.2451 5 6 1.6420 -2.2082 -1.1675 6 6 2.2757 -2.8497 0.0690 7 6 1.7642 -2.1398 1.3265 8 1 0.6930 -2.3108 1.4325 9 6 2.4970 -2.6818 2.5555 10 7 2.0224 -0.6995 1.1946 11 6 2.6935 -0.0315 2.1536 12 8 2.9987 -0.5938 3.1840 13 6 3.0648 1.4143 1.9458 14 8 3.7646 1.8963 3.0947 15 6 4.1724 3.1903 3.0697 16 6 4.8590 3.7217 4.1554 17 6 5.2741 5.0342 4.1345 18 6 5.0046 5.8328 3.0188 19 6 5.4476 7.2386 2.9917 20 8 6.0476 7.7051 3.9401 21 8 5.1873 8.0065 1.9151 22 6 5.6195 9.2834 1.9548 23 1 6.1477 9.6478 2.8235 24 6 5.3845 10.1293 0.8799 25 7 4.7413 9.6859 -0.1770 26 14 5.9826 11.8981 0.9352 27 1 7.3559 11.9741 0.3753 28 1 5.0726 12.7536 0.1320 29 1 5.9947 12.3727 2.3422 30 6 4.3092 5.2957 1.9312 31 6 3.9021 3.9808 1.9586 32 1 -0.3634 0.5084 0.8931 33 1 -0.3634 0.5193 -0.8869 34 1 -0.3634 -1.0276 -0.0063 35 1 3.1354 -0.6595 -1.2888 36 1 1.6163 -0.2847 -2.1386 37 1 1.9852 -2.7275 -2.0622 38 1 0.5566 -2.2820 -1.0988 39 1 3.3601 -2.7543 0.0131 40 1 2.0045 -3.9046 0.1111 41 1 2.0697 -2.2419 3.4566 42 1 2.3893 -3.7658 2.5940 43 1 3.5541 -2.4239 2.4912 44 1 2.1600 2.0041 1.7980 45 1 3.7037 1.5026 1.0672 46 1 5.0671 3.1041 5.0166 47 1 5.8071 5.4464 4.9786 48 1 4.5775 10.2770 -0.9284 49 1 4.0947 5.9104 1.0694 50 1 3.3682 3.5640 1.1173 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012670653.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:27 Heat of formation + Delta-G solvation = -114.956315 kcal Electronic energy + Delta-G solvation = -32006.502071 eV Core-core repulsion = 27579.006946 eV Total energy + Delta-G solvation = -4427.495125 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.21751 -40.04009 -38.95573 -38.02711 -36.90831 -35.06077 -34.11065 -33.29274 -32.21750 -31.06111 -30.33745 -29.68113 -28.08756 -26.96253 -25.51688 -24.09027 -23.24740 -22.79400 -22.19118 -21.16268 -20.13567 -18.87879 -18.40198 -17.75582 -17.18229 -16.87920 -16.78937 -16.27419 -15.74195 -15.51983 -15.07057 -14.93206 -14.57939 -14.48879 -14.37530 -14.32305 -14.11542 -13.85398 -13.57540 -13.29125 -13.23546 -13.09496 -12.94316 -12.59233 -12.43935 -12.31287 -12.21528 -12.06695 -11.92885 -11.54869 -11.51191 -11.38227 -11.32582 -11.09387 -11.00880 -10.93490 -10.70903 -10.46281 -10.40736 -9.85373 -9.36534 -9.08847 -8.99667 -8.85079 -8.62117 -8.06067 -6.47526 -4.10041 1.24219 1.58344 2.16122 2.22502 3.11214 3.17122 3.20832 3.23363 3.45747 3.91907 4.01489 4.10591 4.30920 4.32570 4.36786 4.47794 4.57105 4.61394 4.64841 4.74608 4.77907 4.89912 4.96145 4.98735 5.02359 5.09198 5.13522 5.14522 5.35098 5.38488 5.40593 5.43056 5.50470 5.53459 5.56713 5.65217 5.66892 5.73396 5.77636 5.94630 6.00965 6.15566 6.22495 6.32898 6.44773 6.68241 6.81370 6.96183 7.02346 7.34521 7.39361 7.82959 7.91032 8.69300 9.01876 9.82157 10.70454 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.016193 B = 0.001868 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.709430 B =14987.316980 C =16391.872299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.128 3.872 3 H 0.093 0.907 4 C -0.131 4.131 5 C -0.122 4.122 6 C -0.132 4.132 7 C 0.147 3.853 8 H 0.072 0.928 9 C -0.142 4.142 10 N -0.604 5.604 11 C 0.521 3.479 12 O -0.507 6.507 13 C 0.038 3.962 14 O -0.290 6.290 15 C 0.136 3.864 16 C -0.159 4.159 17 C -0.030 4.030 18 C -0.123 4.123 19 C 0.436 3.564 20 O -0.555 6.555 21 O -0.207 6.207 22 C -0.374 4.374 23 H 0.097 0.903 24 C 0.041 3.959 25 N -0.862 5.862 26 Si 0.945 3.055 27 H -0.273 1.273 28 H -0.278 1.278 29 H -0.266 1.266 30 C -0.031 4.031 31 C -0.222 4.222 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.135 0.865 47 H 0.142 0.858 48 H 0.270 0.730 49 H 0.145 0.855 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.057 -25.643 -4.698 27.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.025 3.975 3 H 0.111 0.889 4 C -0.169 4.169 5 C -0.159 4.159 6 C -0.170 4.170 7 C 0.044 3.956 8 H 0.090 0.910 9 C -0.199 4.199 10 N -0.340 5.340 11 C 0.308 3.692 12 O -0.381 6.381 13 C -0.041 4.041 14 O -0.202 6.202 15 C 0.090 3.910 16 C -0.177 4.177 17 C -0.049 4.049 18 C -0.125 4.125 19 C 0.285 3.715 20 O -0.454 6.454 21 O -0.114 6.114 22 C -0.450 4.450 23 H 0.115 0.885 24 C -0.164 4.164 25 N -0.498 5.498 26 Si 0.769 3.231 27 H -0.198 1.198 28 H -0.203 1.203 29 H -0.190 1.190 30 C -0.049 4.049 31 C -0.240 4.240 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.153 0.847 47 H 0.160 0.840 48 H 0.080 0.920 49 H 0.163 0.837 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.786 -25.872 -3.960 27.943 hybrid contribution 0.122 0.997 -0.498 1.121 sum -9.664 -24.875 -4.458 27.056 Atomic orbital electron populations 1.22183 0.94322 1.02959 1.02905 1.21507 0.94984 0.96401 0.84636 0.88895 1.22017 1.01753 0.95994 0.97151 1.21559 1.00969 0.95354 0.98057 1.22030 1.01299 0.99594 0.94121 1.21273 0.99649 0.78590 0.96057 0.90955 1.22232 1.01655 0.98689 0.97303 1.48146 1.56178 1.09094 1.20631 1.20034 0.78030 0.87660 0.83500 1.90796 1.52956 1.67854 1.26498 1.22557 0.98237 0.93560 0.89703 1.86069 1.70398 1.24637 1.39100 1.19214 0.94576 0.82386 0.94778 1.20254 1.03526 0.95577 0.98371 1.21064 0.95137 0.91546 0.97110 1.19361 1.04071 0.92756 0.96278 1.20667 0.81376 0.86687 0.82777 1.90628 1.42927 1.74605 1.37245 1.83893 1.66367 1.23510 1.37658 1.21301 1.36162 0.83036 1.04462 0.88496 1.25365 0.96400 1.00218 0.94393 1.69975 1.37642 1.36652 1.05575 0.85644 0.78554 0.79960 0.78910 1.19821 1.20296 1.19009 1.21407 0.91936 0.93802 0.97751 1.21124 1.08445 0.95682 0.98793 0.91983 0.90897 0.91714 0.91141 0.90286 0.91477 0.91401 0.91334 0.90657 0.90137 0.93626 0.91611 0.89023 0.88950 0.84731 0.84048 0.91982 0.83686 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 9.03 37.16 0.34 -0.44 16 2 C 0.13 0.71 3.14 -67.38 -0.21 0.49 16 3 H 0.09 0.45 5.93 -51.93 -0.31 0.14 16 4 C -0.13 -0.61 5.58 -26.39 -0.15 -0.76 16 5 C -0.12 -0.54 5.68 -26.69 -0.15 -0.69 16 6 C -0.13 -0.73 5.37 -26.61 -0.14 -0.87 16 7 C 0.15 1.06 3.07 -67.60 -0.21 0.85 16 8 H 0.07 0.47 7.48 -51.93 -0.39 0.08 16 9 C -0.14 -1.28 7.61 37.16 0.28 -1.00 16 10 N -0.60 -4.75 2.68 -157.48 -0.42 -5.17 16 11 C 0.52 5.65 7.58 -10.99 -0.08 5.56 16 12 O -0.51 -7.22 12.07 -14.36 -0.17 -7.40 16 13 C 0.04 0.39 3.57 36.01 0.13 0.51 16 14 O -0.29 -4.05 9.66 -38.72 -0.37 -4.42 16 15 C 0.14 2.01 6.70 -39.00 -0.26 1.75 16 16 C -0.16 -2.43 9.97 -39.50 -0.39 -2.83 16 17 C -0.03 -0.53 9.59 -39.19 -0.38 -0.91 16 18 C -0.12 -2.52 5.88 -104.97 -0.62 -3.14 16 19 C 0.44 11.23 7.83 34.47 0.27 11.49 16 20 O -0.56 -15.38 15.59 -19.29 -0.30 -15.68 16 21 O -0.21 -5.93 8.98 -21.77 -0.20 -6.12 16 22 C -0.37 -11.00 9.65 30.94 0.30 -10.71 16 23 H 0.10 2.88 6.86 -52.49 -0.36 2.52 16 24 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 25 N -0.86 -24.64 13.67 55.49 0.76 -23.89 16 26 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 29 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 30 C -0.03 -0.55 9.61 -39.20 -0.38 -0.92 16 31 C -0.22 -3.18 9.01 -39.50 -0.36 -3.54 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.29 5.71 -51.93 -0.30 0.00 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.27 6.49 -51.93 -0.34 -0.07 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.90 6.54 -51.93 -0.34 0.56 16 42 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.72 6.96 -51.93 -0.36 0.36 16 44 H 0.09 0.75 7.20 -51.93 -0.37 0.37 16 45 H 0.09 0.76 7.45 -51.93 -0.39 0.37 16 46 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 47 H 0.14 2.42 7.64 -52.49 -0.40 2.02 16 48 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.15 2.70 7.60 -52.49 -0.40 2.30 16 50 H 0.13 1.38 6.27 -52.48 -0.33 1.05 16 LS Contribution 401.50 15.07 6.05 6.05 Total: -1.00 -35.11 401.50 -9.00 -44.11 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.22 Total: 0.60 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -2.11 Total: -4.11 kcal Atomic # 7 Polarization: -29.39 SS G_CDS: 0.34 Total: -29.06 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.04 Total: -33.63 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.11 -9.00 -44.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012670653.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.846 kcal (2) G-P(sol) polarization free energy of solvation -35.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds