Wall clock time and date at job start Tue Mar 31 2020 05:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.70037 * 2 1 4 4 C 1.53617 * 109.74292 * 239.44686 * 2 1 3 5 5 C 1.53037 * 109.24654 * 295.12234 * 4 2 1 6 6 C 1.53038 * 109.53790 * 298.50952 * 5 4 2 7 7 C 1.53194 * 109.31341 * 61.36079 * 6 5 4 8 8 H 1.08997 * 109.58811 * 65.15466 * 7 6 5 9 9 C 1.53003 * 109.58938 * 185.57912 * 7 6 5 10 10 N 1.46924 * 108.77823 * 305.36951 * 7 6 5 11 11 C 1.34773 * 120.63259 * 233.58846 * 10 7 6 12 12 O 1.21286 * 120.00203 * 354.20125 * 11 10 7 13 13 C 1.50703 * 120.00275 * 174.20497 * 11 10 7 14 14 O 1.42902 * 109.47259 * 179.97438 * 13 11 10 15 15 C 1.35701 * 117.00205 * 180.02562 * 14 13 11 16 16 C 1.39011 * 119.90691 * 180.02562 * 15 14 13 17 17 C 1.37671 * 120.10194 * 180.02562 * 16 15 14 18 18 C 1.39834 * 119.89748 * 359.97438 * 17 16 15 19 19 C 1.47420 * 120.09183 * 180.02562 * 18 17 16 20 20 O 1.21534 * 119.99974 * 359.97438 * 19 18 17 21 21 O 1.34767 * 119.99632 * 179.97438 * 19 18 17 22 22 C 1.34867 * 117.00095 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99458 * 359.97438 * 22 21 19 24 24 C 1.38791 * 120.00207 * 180.02562 * 22 21 19 25 25 N 1.31429 * 120.00138 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00039 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47379 * 89.99890 * 26 24 22 28 28 H 1.48497 * 109.47343 * 209.99696 * 26 24 22 29 29 H 1.48495 * 109.47269 * 329.99746 * 26 24 22 30 30 C 1.39821 * 119.80768 * 0.27209 * 18 17 16 31 31 C 1.37670 * 119.90254 * 359.49067 * 30 18 17 32 32 H 1.09004 * 109.47398 * 299.64814 * 1 2 3 33 33 H 1.09005 * 109.47127 * 59.65033 * 1 2 3 34 34 H 1.08997 * 109.47441 * 179.64640 * 1 2 3 35 35 H 1.09000 * 109.63759 * 175.12389 * 4 2 1 36 36 H 1.09006 * 109.43028 * 54.99048 * 4 2 1 37 37 H 1.08995 * 109.46745 * 178.48596 * 5 4 2 38 38 H 1.09005 * 109.45860 * 58.52322 * 5 4 2 39 39 H 1.09002 * 109.49755 * 301.41337 * 6 5 4 40 40 H 1.08998 * 109.50150 * 181.31258 * 6 5 4 41 41 H 1.09000 * 109.46725 * 185.08562 * 9 7 6 42 42 H 1.08997 * 109.47159 * 305.08458 * 9 7 6 43 43 H 1.08999 * 109.46926 * 65.08365 * 9 7 6 44 44 H 1.09005 * 109.47001 * 59.99926 * 13 11 10 45 45 H 1.09000 * 109.47054 * 299.99870 * 13 11 10 46 46 H 1.08007 * 119.95222 * 0.02562 * 16 15 14 47 47 H 1.08001 * 120.05561 * 179.97438 * 17 16 15 48 48 H 0.97001 * 119.99985 * 180.02562 * 25 24 22 49 49 H 1.08001 * 120.04867 * 179.70365 * 30 18 17 50 50 H 1.08003 * 119.95119 * 180.22953 * 31 30 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0489 -0.7350 -1.2451 5 6 1.6420 -2.2082 -1.1675 6 6 2.2757 -2.8497 0.0690 7 6 1.7642 -2.1398 1.3265 8 1 0.6930 -2.3108 1.4325 9 6 2.4970 -2.6818 2.5555 10 7 2.0224 -0.6995 1.1946 11 6 2.6935 -0.0315 2.1536 12 8 2.9987 -0.5938 3.1840 13 6 3.0648 1.4143 1.9458 14 8 3.7646 1.8963 3.0947 15 6 4.1724 3.1903 3.0697 16 6 4.8590 3.7217 4.1554 17 6 5.2741 5.0342 4.1345 18 6 5.0046 5.8328 3.0188 19 6 5.4476 7.2386 2.9917 20 8 6.0476 7.7051 3.9401 21 8 5.1873 8.0065 1.9151 22 6 5.6195 9.2834 1.9548 23 1 6.1477 9.6478 2.8235 24 6 5.3845 10.1293 0.8799 25 7 4.7413 9.6859 -0.1770 26 14 5.9826 11.8981 0.9352 27 1 7.3559 11.9741 0.3753 28 1 5.0726 12.7536 0.1320 29 1 5.9947 12.3727 2.3422 30 6 4.3092 5.2957 1.9312 31 6 3.9021 3.9808 1.9586 32 1 -0.3634 0.5084 0.8931 33 1 -0.3634 0.5193 -0.8869 34 1 -0.3634 -1.0276 -0.0063 35 1 3.1354 -0.6595 -1.2888 36 1 1.6163 -0.2847 -2.1386 37 1 1.9852 -2.7275 -2.0622 38 1 0.5566 -2.2820 -1.0988 39 1 3.3601 -2.7543 0.0131 40 1 2.0045 -3.9046 0.1111 41 1 2.0697 -2.2419 3.4566 42 1 2.3893 -3.7658 2.5940 43 1 3.5541 -2.4239 2.4912 44 1 2.1600 2.0041 1.7980 45 1 3.7037 1.5026 1.0672 46 1 5.0671 3.1041 5.0166 47 1 5.8071 5.4464 4.9786 48 1 4.5775 10.2770 -0.9284 49 1 4.0947 5.9104 1.0694 50 1 3.3682 3.5640 1.1173 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012670653.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:25 Heat of formation + Delta-G solvation = -134.589570 kcal Electronic energy + Delta-G solvation = -32007.353433 eV Core-core repulsion = 27579.006946 eV Total energy + Delta-G solvation = -4428.346486 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.98717 -41.35949 -40.66312 -38.87986 -38.17406 -37.11441 -34.67545 -34.33036 -33.86358 -32.33768 -31.58614 -30.46278 -28.94284 -27.54031 -27.43656 -24.86443 -24.53002 -23.89063 -23.02109 -21.98840 -21.56455 -19.91245 -19.57262 -19.47770 -18.83431 -17.75702 -17.56836 -17.30964 -16.92712 -16.62176 -16.54686 -16.17664 -16.03122 -15.73581 -15.61940 -15.04894 -14.93373 -14.79101 -14.59966 -14.47437 -14.20834 -14.02255 -13.76477 -13.68008 -13.62521 -13.41991 -13.25133 -13.11902 -12.90028 -12.74806 -12.51466 -12.44424 -12.19663 -12.12514 -12.10409 -12.01662 -11.89081 -11.78837 -11.51394 -11.31976 -11.14931 -10.70809 -10.17435 -10.15253 -9.62542 -9.40015 -8.56746 -6.33123 -0.21264 0.27992 1.34660 1.36939 1.37251 1.44126 1.51723 1.76662 2.10741 2.35191 2.71533 2.74275 3.03686 3.28465 3.64335 3.73518 3.81643 3.85541 3.93265 3.97070 4.01432 4.04200 4.16747 4.19576 4.27316 4.31030 4.41608 4.44225 4.50717 4.63728 4.68564 4.69013 4.83191 4.94810 4.96235 5.02510 5.02843 5.06027 5.10887 5.12960 5.17304 5.22850 5.24731 5.28685 5.35112 5.48104 5.50814 5.54377 5.66895 5.80930 6.17481 6.33039 6.60834 6.88271 7.07049 7.72532 8.63833 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.016193 B = 0.001868 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.709430 B =14987.316980 C =16391.872299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.121 3.879 3 H 0.104 0.896 4 C -0.129 4.129 5 C -0.120 4.120 6 C -0.127 4.127 7 C 0.143 3.857 8 H 0.084 0.916 9 C -0.134 4.134 10 N -0.596 5.596 11 C 0.515 3.485 12 O -0.552 6.552 13 C 0.028 3.972 14 O -0.301 6.301 15 C 0.156 3.844 16 C -0.156 4.156 17 C -0.027 4.027 18 C -0.162 4.162 19 C 0.436 3.564 20 O -0.586 6.586 21 O -0.231 6.231 22 C -0.420 4.420 23 H 0.080 0.920 24 C -0.002 4.002 25 N -0.896 5.896 26 Si 1.018 2.982 27 H -0.260 1.260 28 H -0.257 1.257 29 H -0.266 1.266 30 C -0.030 4.030 31 C -0.205 4.205 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.157 0.843 47 H 0.139 0.861 48 H 0.281 0.719 49 H 0.132 0.868 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.490 -27.053 -6.666 30.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 H 0.122 0.878 4 C -0.167 4.167 5 C -0.157 4.157 6 C -0.165 4.165 7 C 0.041 3.959 8 H 0.102 0.898 9 C -0.191 4.191 10 N -0.331 5.331 11 C 0.302 3.698 12 O -0.430 6.430 13 C -0.050 4.050 14 O -0.213 6.213 15 C 0.110 3.890 16 C -0.175 4.175 17 C -0.045 4.045 18 C -0.164 4.164 19 C 0.286 3.714 20 O -0.486 6.486 21 O -0.139 6.139 22 C -0.496 4.496 23 H 0.098 0.902 24 C -0.202 4.202 25 N -0.532 5.532 26 Si 0.837 3.163 27 H -0.184 1.184 28 H -0.181 1.181 29 H -0.190 1.190 30 C -0.049 4.049 31 C -0.223 4.223 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.175 0.825 47 H 0.156 0.844 48 H 0.090 0.910 49 H 0.150 0.850 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.251 -27.323 -5.972 30.146 hybrid contribution 0.472 1.110 0.137 1.214 sum -10.779 -26.213 -5.835 28.937 Atomic orbital electron populations 1.22169 0.93452 1.03265 1.03191 1.21792 0.95656 0.96884 0.83830 0.87770 1.22025 1.01373 0.96124 0.97221 1.21566 1.01418 0.95184 0.97572 1.21987 1.00516 1.00267 0.93741 1.21376 1.00052 0.78430 0.96034 0.89805 1.22074 1.00133 0.99598 0.97291 1.48246 1.54860 1.09371 1.20588 1.20259 0.78055 0.87994 0.83447 1.90800 1.55027 1.68789 1.28359 1.22936 0.99548 0.93385 0.89089 1.86077 1.70403 1.23676 1.41158 1.19270 0.92719 0.82803 0.94202 1.20434 1.02904 0.94596 0.99520 1.21039 0.95109 0.92257 0.96111 1.19223 1.07777 0.90313 0.99045 1.21703 0.79778 0.88367 0.81509 1.90574 1.44204 1.75787 1.38046 1.83911 1.67416 1.23632 1.38968 1.21470 1.38656 0.84211 1.05257 0.90177 1.26531 0.95728 1.04693 0.93292 1.70043 1.38198 1.38734 1.06263 0.84622 0.78822 0.73741 0.79154 1.18419 1.18107 1.18989 1.21321 0.91864 0.95211 0.96464 1.21388 1.07268 0.93749 0.99889 0.92910 0.89367 0.91479 0.91885 0.88636 0.90677 0.90482 0.92602 0.89412 0.92655 0.92020 0.93964 0.86302 0.86349 0.82519 0.84354 0.90983 0.84974 0.81080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.03 71.98 0.65 -0.35 16 2 C 0.12 0.93 3.14 45.12 0.14 1.08 16 3 H 0.10 0.57 5.93 -2.38 -0.01 0.56 16 4 C -0.13 -0.78 5.58 30.81 0.17 -0.60 16 5 C -0.12 -0.69 5.68 30.62 0.17 -0.52 16 6 C -0.13 -1.13 5.37 30.67 0.16 -0.96 16 7 C 0.14 1.83 3.07 44.98 0.14 1.97 16 8 H 0.08 0.91 7.48 -2.39 -0.02 0.89 16 9 C -0.13 -2.40 7.61 71.98 0.55 -1.85 16 10 N -0.60 -8.13 2.68 -770.52 -2.06 -10.19 16 11 C 0.51 10.32 7.58 87.66 0.66 10.98 16 12 O -0.55 -15.65 12.07 15.99 0.19 -15.45 16 13 C 0.03 0.47 3.57 71.24 0.25 0.73 16 14 O -0.30 -7.58 9.66 -71.17 -0.69 -8.26 16 15 C 0.16 4.20 6.70 22.64 0.15 4.35 16 16 C -0.16 -4.53 9.97 22.32 0.22 -4.31 16 17 C -0.03 -0.95 9.59 22.52 0.22 -0.73 16 18 C -0.16 -6.82 5.88 -20.09 -0.12 -6.93 16 19 C 0.44 23.64 7.83 70.24 0.55 24.19 16 20 O -0.59 -34.31 15.59 19.73 0.31 -34.01 16 21 O -0.23 -13.95 8.98 10.86 0.10 -13.85 16 22 C -0.42 -25.95 9.65 67.95 0.66 -25.30 16 23 H 0.08 5.05 6.86 -2.91 -0.02 5.03 16 24 C 0.00 -0.09 5.49 84.89 0.47 0.38 16 25 N -0.90 -52.01 13.67 21.63 0.30 -51.71 16 26 Si 1.02 43.38 29.55 68.60 2.03 45.40 16 27 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 28 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 29 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 30 C -0.03 -1.06 9.61 22.52 0.22 -0.85 16 31 C -0.20 -5.30 9.01 22.32 0.20 -5.10 16 32 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 34 H 0.07 0.39 5.71 -2.39 -0.01 0.38 16 35 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 37 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.08 0.33 6.49 -2.38 -0.02 0.32 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16 41 H 0.05 1.27 6.54 -2.39 -0.02 1.26 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.04 0.95 6.96 -2.39 -0.02 0.93 16 44 H 0.12 1.40 7.20 -2.38 -0.02 1.38 16 45 H 0.12 1.43 7.45 -2.39 -0.02 1.41 16 46 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 47 H 0.14 4.89 7.64 -2.91 -0.02 4.87 16 48 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 49 H 0.13 5.01 7.60 -2.91 -0.02 4.99 16 50 H 0.17 2.87 6.27 -2.91 -0.02 2.85 16 Total: -1.00 -81.62 401.50 6.60 -75.02 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.96 Total: 16.87 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 5.47 Total: -3.82 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -1.77 Total: -61.90 kcal Atomic # 8 Polarization: -71.48 SS G_CDS: -0.09 Total: -71.57 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -81.62 6.60 -75.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012670653.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.568 kcal (2) G-P(sol) polarization free energy of solvation -81.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds