Wall clock time and date at job start Tue Mar 31 2020 05:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.70183 * 2 1 4 4 C 1.52766 * 109.50813 * 239.88865 * 2 1 3 5 5 C 1.53039 * 109.38239 * 185.70834 * 4 2 1 6 6 C 1.53041 * 109.54146 * 61.23644 * 5 4 2 7 7 C 1.53186 * 109.31161 * 298.63628 * 6 5 4 8 8 H 1.08996 * 109.58870 * 294.84628 * 7 6 5 9 9 C 1.53009 * 109.70187 * 174.48698 * 7 6 5 10 10 N 1.46919 * 109.58987 * 120.36214 * 2 1 3 11 11 C 1.34783 * 120.62659 * 353.41595 * 10 2 1 12 12 O 1.21290 * 119.99639 * 162.55075 * 11 10 2 13 13 C 1.50696 * 120.00314 * 342.55226 * 11 10 2 14 14 O 1.42899 * 109.47340 * 183.44673 * 13 11 10 15 15 C 1.35702 * 116.99730 * 179.97438 * 14 13 11 16 16 C 1.39022 * 119.89904 * 180.02562 * 15 14 13 17 17 C 1.37676 * 120.09651 * 180.02562 * 16 15 14 18 18 C 1.39828 * 119.89902 * 359.97290 * 17 16 15 19 19 C 1.47422 * 120.09304 * 180.02562 * 18 17 16 20 20 O 1.21535 * 119.99734 * 359.97438 * 19 18 17 21 21 O 1.34772 * 119.99802 * 180.02562 * 19 18 17 22 22 C 1.34862 * 116.99782 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99892 * 359.97438 * 22 21 19 24 24 C 1.38792 * 119.99684 * 179.97438 * 22 21 19 25 25 N 1.31425 * 119.99627 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 120.00288 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47058 * 90.00175 * 26 24 22 28 28 H 1.48496 * 109.47195 * 209.99914 * 26 24 22 29 29 H 1.48502 * 109.47000 * 330.00085 * 26 24 22 30 30 C 1.39830 * 119.81139 * 0.27899 * 18 17 16 31 31 C 1.37669 * 119.89772 * 359.44765 * 30 18 17 32 32 H 1.09000 * 109.46854 * 299.42522 * 1 2 3 33 33 H 1.09001 * 109.47218 * 59.42617 * 1 2 3 34 34 H 1.09001 * 109.46641 * 179.42441 * 1 2 3 35 35 H 1.09003 * 109.56607 * 65.67091 * 4 2 1 36 36 H 1.08997 * 109.35871 * 305.61553 * 4 2 1 37 37 H 1.09003 * 109.45792 * 301.21760 * 5 4 2 38 38 H 1.09004 * 109.46003 * 181.26010 * 5 4 2 39 39 H 1.08996 * 109.49983 * 178.68268 * 6 5 4 40 40 H 1.08998 * 109.49437 * 58.58652 * 6 5 4 41 41 H 1.08991 * 109.47194 * 296.89387 * 9 7 6 42 42 H 1.08999 * 109.46363 * 56.89734 * 9 7 6 43 43 H 1.09004 * 109.46707 * 176.89260 * 9 7 6 44 44 H 1.09006 * 109.47155 * 63.44549 * 13 11 10 45 45 H 1.09000 * 109.46949 * 303.44704 * 13 11 10 46 46 H 1.08001 * 119.95592 * 0.02562 * 16 15 14 47 47 H 1.07992 * 120.04988 * 180.02562 * 17 16 15 48 48 H 0.97008 * 119.99699 * 179.97438 * 25 24 22 49 49 H 1.07993 * 120.04968 * 179.70420 * 30 18 17 50 50 H 1.08003 * 119.94954 * 180.27481 * 31 30 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5638 -0.8461 -1.1728 6 6 3.9523 -1.6687 0.0579 7 6 3.4645 -0.9520 1.3209 8 1 3.9929 -0.0051 1.4309 9 6 3.7258 -1.8306 2.5460 10 7 2.0226 -0.6996 1.1943 11 6 1.1674 -1.1071 2.1530 12 8 1.5155 -1.9418 2.9613 13 6 -0.2213 -0.5258 2.2207 14 8 -0.9032 -1.0525 3.3607 15 6 -2.1748 -0.6268 3.5690 16 6 -2.8940 -1.1001 4.6605 17 6 -4.1845 -0.6713 4.8754 18 6 -4.7714 0.2419 3.9941 19 6 -6.1528 0.7043 4.2204 20 8 -6.7833 0.2913 5.1738 21 8 -6.7168 1.5842 3.3695 22 6 -7.9827 1.9666 3.6342 23 1 -8.4977 1.5692 4.4963 24 6 -8.6235 2.8709 2.7988 25 7 -9.8573 3.2431 3.0565 26 14 -7.7324 3.5588 1.3080 27 1 -7.9785 2.6812 0.1357 28 1 -8.2356 4.9254 1.0176 29 1 -6.2747 3.6166 1.5858 30 6 -4.0462 0.7113 2.8946 31 6 -2.7543 0.2816 2.6905 32 1 -0.3633 0.5049 0.8951 33 1 -0.3634 0.5227 -0.8848 34 1 -0.3633 -1.0277 -0.0103 35 1 1.7632 -0.1563 -2.1350 36 1 1.5964 -1.7168 -1.2938 37 1 4.0057 0.1476 -1.0996 38 1 3.9313 -1.3415 -2.0715 39 1 5.0363 -1.7762 0.0963 40 1 3.4905 -2.6541 -0.0026 41 1 3.1480 -2.7511 2.4629 42 1 4.7874 -2.0716 2.6004 43 1 3.4281 -1.2949 3.4474 44 1 -0.7697 -0.7885 1.3160 45 1 -0.1573 0.5591 2.3047 46 1 -2.4398 -1.8051 5.3410 47 1 -4.7424 -1.0392 5.7237 48 1 -10.3051 3.8755 2.4728 49 1 -4.4973 1.4131 2.2088 50 1 -2.1918 0.6470 1.8440 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012670663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:31 Heat of formation + Delta-G solvation = -54.936440 kcal Electronic energy + Delta-G solvation = -32392.381233 eV Core-core repulsion = 27967.488765 eV Total energy + Delta-G solvation = -4424.892467 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.60911 -40.09958 -39.11468 -37.95365 -37.12305 -35.33684 -35.14578 -33.31867 -32.37100 -31.23893 -30.35971 -29.89503 -29.01163 -26.37696 -25.66944 -24.06474 -23.01077 -22.49866 -22.16353 -21.54101 -20.09747 -19.73044 -18.38806 -18.01231 -17.50417 -17.12685 -16.66023 -16.26739 -15.79380 -15.43247 -15.25962 -14.84820 -14.74697 -14.70106 -14.63964 -14.33281 -14.19989 -13.83472 -13.61659 -13.51473 -13.36491 -13.29261 -12.84385 -12.66293 -12.47816 -12.39021 -12.34616 -12.18601 -11.86243 -11.75411 -11.53459 -11.37856 -11.30866 -11.13253 -11.04397 -10.87699 -10.55004 -10.48054 -10.40236 -9.73786 -9.45626 -9.23936 -9.02112 -8.97603 -8.72411 -8.15211 -6.41881 -4.13258 1.12384 1.45293 2.08729 2.15113 3.12503 3.15422 3.19571 3.29567 3.34602 3.92254 4.03251 4.12865 4.13643 4.19703 4.20873 4.29483 4.36956 4.52445 4.57097 4.61882 4.64234 4.80958 4.82407 4.89556 4.95951 4.99775 5.04355 5.10636 5.21558 5.28618 5.34099 5.37291 5.40228 5.45218 5.49398 5.51359 5.52899 5.61926 5.69049 5.84236 5.94064 5.98739 6.10261 6.27759 6.29773 6.48614 6.70652 6.77995 6.90848 7.29661 7.70507 7.75749 8.00197 8.60820 8.96133 9.65631 10.66325 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.002089 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.720334 B =13403.145908 C =15022.307453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.140 3.860 3 H 0.081 0.919 4 C -0.131 4.131 5 C -0.121 4.121 6 C -0.132 4.132 7 C 0.148 3.852 8 H 0.073 0.927 9 C -0.146 4.146 10 N -0.612 5.612 11 C 0.524 3.476 12 O -0.503 6.503 13 C 0.001 3.999 14 O -0.299 6.299 15 C 0.143 3.857 16 C -0.158 4.158 17 C -0.026 4.026 18 C -0.126 4.126 19 C 0.450 3.550 20 O -0.538 6.538 21 O -0.246 6.246 22 C -0.373 4.373 23 H 0.111 0.889 24 C 0.064 3.936 25 N -0.870 5.870 26 Si 0.905 3.095 27 H -0.272 1.272 28 H -0.281 1.281 29 H -0.259 1.259 30 C -0.035 4.035 31 C -0.225 4.225 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.134 0.866 45 H 0.096 0.904 46 H 0.136 0.864 47 H 0.144 0.856 48 H 0.280 0.720 49 H 0.139 0.861 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.508 -6.189 -11.699 33.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C 0.037 3.963 3 H 0.099 0.901 4 C -0.169 4.169 5 C -0.159 4.159 6 C -0.171 4.171 7 C 0.045 3.955 8 H 0.091 0.909 9 C -0.203 4.203 10 N -0.350 5.350 11 C 0.311 3.689 12 O -0.377 6.377 13 C -0.076 4.076 14 O -0.211 6.211 15 C 0.097 3.903 16 C -0.177 4.177 17 C -0.044 4.044 18 C -0.128 4.128 19 C 0.297 3.703 20 O -0.434 6.434 21 O -0.154 6.154 22 C -0.449 4.449 23 H 0.128 0.872 24 C -0.140 4.140 25 N -0.509 5.509 26 Si 0.730 3.270 27 H -0.198 1.198 28 H -0.207 1.207 29 H -0.183 1.183 30 C -0.053 4.053 31 C -0.243 4.243 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.150 0.850 45 H 0.114 0.886 46 H 0.154 0.846 47 H 0.161 0.839 48 H 0.091 0.909 49 H 0.157 0.843 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 30.456 -6.740 -10.960 33.062 hybrid contribution 0.156 0.716 -0.991 1.233 sum 30.612 -6.024 -11.951 33.409 Atomic orbital electron populations 1.23685 0.94656 1.03341 1.05653 1.21152 0.94316 0.96242 0.84629 0.90077 1.21919 0.96342 1.01596 0.97079 1.21533 0.95504 1.00618 0.98208 1.22021 1.01337 0.99672 0.94042 1.21295 0.79131 0.98799 0.96243 0.90933 1.22284 1.00211 1.01684 0.96166 1.48148 1.07042 1.59460 1.20373 1.20099 0.85920 0.81940 0.80984 1.90778 1.76131 1.29507 1.41249 1.25040 0.93148 0.98592 0.90780 1.86056 1.24040 1.65289 1.45765 1.19192 0.83190 0.93314 0.94563 1.20299 0.94311 1.04739 0.98330 1.21079 0.93004 0.92796 0.97571 1.19308 0.93204 1.01950 0.98309 1.20408 0.86754 0.80533 0.82556 1.90675 1.64026 1.57657 1.31087 1.83531 1.30435 1.52450 1.48997 1.20705 0.85017 1.25443 1.13724 0.87153 1.24574 0.95173 0.95714 0.98551 1.69601 1.10904 1.31929 1.38438 0.86221 0.80764 0.78248 0.81748 1.19764 1.20695 1.18336 1.21311 0.92508 0.96068 0.95426 1.21123 0.97542 1.03471 1.02189 0.88334 0.89813 0.90521 0.90266 0.91200 0.91633 0.91382 0.90629 0.91246 0.89752 0.93369 0.91783 0.84973 0.88648 0.84588 0.83867 0.90933 0.84278 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.95 7.03 37.16 0.26 -0.69 16 2 C 0.14 0.68 3.45 -67.82 -0.23 0.44 16 3 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 4 C -0.13 -0.54 5.35 -26.83 -0.14 -0.69 16 5 C -0.12 -0.49 5.89 -26.69 -0.16 -0.64 16 6 C -0.13 -0.69 5.38 -26.61 -0.14 -0.83 16 7 C 0.15 1.01 3.49 -67.60 -0.24 0.77 16 8 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 9 C -0.15 -1.27 7.62 37.16 0.28 -0.99 16 10 N -0.61 -4.54 2.98 -157.98 -0.47 -5.01 16 11 C 0.52 5.39 7.27 -10.98 -0.08 5.31 16 12 O -0.50 -6.95 12.16 -14.34 -0.17 -7.12 16 13 C 0.00 0.01 3.05 36.00 0.11 0.12 16 14 O -0.30 -3.91 9.66 -38.70 -0.37 -4.28 16 15 C 0.14 1.95 6.70 -39.00 -0.26 1.69 16 16 C -0.16 -2.26 9.97 -39.50 -0.39 -2.65 16 17 C -0.03 -0.43 9.59 -39.19 -0.38 -0.81 16 18 C -0.13 -2.40 5.88 -104.97 -0.62 -3.02 16 19 C 0.45 10.99 7.83 34.47 0.27 11.26 16 20 O -0.54 -14.66 15.59 -19.29 -0.30 -14.96 16 21 O -0.25 -6.48 7.81 -21.77 -0.17 -6.65 16 22 C -0.37 -11.06 10.11 30.94 0.31 -10.75 16 23 H 0.11 3.61 7.09 -52.49 -0.37 3.24 16 24 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 25 N -0.87 -25.47 13.96 55.49 0.77 -24.70 16 26 Si 0.90 20.79 28.62 -169.99 -4.86 15.93 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 30 C -0.03 -0.56 9.61 -39.19 -0.38 -0.93 16 31 C -0.22 -2.88 9.01 -39.50 -0.36 -3.23 16 32 H 0.10 0.45 3.00 -78.01 -0.23 0.22 16 33 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.38 6.60 -51.93 -0.34 0.04 16 35 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.92 6.40 -51.93 -0.33 0.58 16 42 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.67 7.13 -51.93 -0.37 0.30 16 44 H 0.13 0.96 3.46 -68.98 -0.24 0.72 16 45 H 0.10 0.70 6.40 -51.93 -0.33 0.37 16 46 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 47 H 0.14 2.32 7.64 -52.49 -0.40 1.92 16 48 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.14 2.21 7.60 -52.49 -0.40 1.82 16 50 H 0.13 1.15 5.63 -52.48 -0.30 0.86 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -35.24 393.54 -8.99 -44.23 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.10 Total: 0.57 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.23 Total: -3.93 kcal Atomic # 7 Polarization: -30.02 SS G_CDS: 0.30 Total: -29.71 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -1.02 Total: -33.01 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.86 Total: 15.93 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.24 -8.99 -44.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012670663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.707 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds