Wall clock time and date at job start Tue Mar 31 2020 05:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.70183 * 2 1 4 4 C 1.52766 * 109.50813 * 239.88865 * 2 1 3 5 5 C 1.53039 * 109.38239 * 185.70834 * 4 2 1 6 6 C 1.53041 * 109.54146 * 61.23644 * 5 4 2 7 7 C 1.53186 * 109.31161 * 298.63628 * 6 5 4 8 8 H 1.08996 * 109.58870 * 294.84628 * 7 6 5 9 9 C 1.53009 * 109.70187 * 174.48698 * 7 6 5 10 10 N 1.46919 * 109.58987 * 120.36214 * 2 1 3 11 11 C 1.34783 * 120.62659 * 353.41595 * 10 2 1 12 12 O 1.21290 * 119.99639 * 162.55075 * 11 10 2 13 13 C 1.50696 * 120.00314 * 342.55226 * 11 10 2 14 14 O 1.42899 * 109.47340 * 183.44673 * 13 11 10 15 15 C 1.35702 * 116.99730 * 179.97438 * 14 13 11 16 16 C 1.39022 * 119.89904 * 180.02562 * 15 14 13 17 17 C 1.37676 * 120.09651 * 180.02562 * 16 15 14 18 18 C 1.39828 * 119.89902 * 359.97290 * 17 16 15 19 19 C 1.47422 * 120.09304 * 180.02562 * 18 17 16 20 20 O 1.21535 * 119.99734 * 359.97438 * 19 18 17 21 21 O 1.34772 * 119.99802 * 180.02562 * 19 18 17 22 22 C 1.34862 * 116.99782 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99892 * 359.97438 * 22 21 19 24 24 C 1.38792 * 119.99684 * 179.97438 * 22 21 19 25 25 N 1.31425 * 119.99627 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 120.00288 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47058 * 90.00175 * 26 24 22 28 28 H 1.48496 * 109.47195 * 209.99914 * 26 24 22 29 29 H 1.48502 * 109.47000 * 330.00085 * 26 24 22 30 30 C 1.39830 * 119.81139 * 0.27899 * 18 17 16 31 31 C 1.37669 * 119.89772 * 359.44765 * 30 18 17 32 32 H 1.09000 * 109.46854 * 299.42522 * 1 2 3 33 33 H 1.09001 * 109.47218 * 59.42617 * 1 2 3 34 34 H 1.09001 * 109.46641 * 179.42441 * 1 2 3 35 35 H 1.09003 * 109.56607 * 65.67091 * 4 2 1 36 36 H 1.08997 * 109.35871 * 305.61553 * 4 2 1 37 37 H 1.09003 * 109.45792 * 301.21760 * 5 4 2 38 38 H 1.09004 * 109.46003 * 181.26010 * 5 4 2 39 39 H 1.08996 * 109.49983 * 178.68268 * 6 5 4 40 40 H 1.08998 * 109.49437 * 58.58652 * 6 5 4 41 41 H 1.08991 * 109.47194 * 296.89387 * 9 7 6 42 42 H 1.08999 * 109.46363 * 56.89734 * 9 7 6 43 43 H 1.09004 * 109.46707 * 176.89260 * 9 7 6 44 44 H 1.09006 * 109.47155 * 63.44549 * 13 11 10 45 45 H 1.09000 * 109.46949 * 303.44704 * 13 11 10 46 46 H 1.08001 * 119.95592 * 0.02562 * 16 15 14 47 47 H 1.07992 * 120.04988 * 180.02562 * 17 16 15 48 48 H 0.97008 * 119.99699 * 179.97438 * 25 24 22 49 49 H 1.07993 * 120.04968 * 179.70420 * 30 18 17 50 50 H 1.08003 * 119.94954 * 180.27481 * 31 30 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5638 -0.8461 -1.1728 6 6 3.9523 -1.6687 0.0579 7 6 3.4645 -0.9520 1.3209 8 1 3.9929 -0.0051 1.4309 9 6 3.7258 -1.8306 2.5460 10 7 2.0226 -0.6996 1.1943 11 6 1.1674 -1.1071 2.1530 12 8 1.5155 -1.9418 2.9613 13 6 -0.2213 -0.5258 2.2207 14 8 -0.9032 -1.0525 3.3607 15 6 -2.1748 -0.6268 3.5690 16 6 -2.8940 -1.1001 4.6605 17 6 -4.1845 -0.6713 4.8754 18 6 -4.7714 0.2419 3.9941 19 6 -6.1528 0.7043 4.2204 20 8 -6.7833 0.2913 5.1738 21 8 -6.7168 1.5842 3.3695 22 6 -7.9827 1.9666 3.6342 23 1 -8.4977 1.5692 4.4963 24 6 -8.6235 2.8709 2.7988 25 7 -9.8573 3.2431 3.0565 26 14 -7.7324 3.5588 1.3080 27 1 -7.9785 2.6812 0.1357 28 1 -8.2356 4.9254 1.0176 29 1 -6.2747 3.6166 1.5858 30 6 -4.0462 0.7113 2.8946 31 6 -2.7543 0.2816 2.6905 32 1 -0.3633 0.5049 0.8951 33 1 -0.3634 0.5227 -0.8848 34 1 -0.3633 -1.0277 -0.0103 35 1 1.7632 -0.1563 -2.1350 36 1 1.5964 -1.7168 -1.2938 37 1 4.0057 0.1476 -1.0996 38 1 3.9313 -1.3415 -2.0715 39 1 5.0363 -1.7762 0.0963 40 1 3.4905 -2.6541 -0.0026 41 1 3.1480 -2.7511 2.4629 42 1 4.7874 -2.0716 2.6004 43 1 3.4281 -1.2949 3.4474 44 1 -0.7697 -0.7885 1.3160 45 1 -0.1573 0.5591 2.3047 46 1 -2.4398 -1.8051 5.3410 47 1 -4.7424 -1.0392 5.7237 48 1 -10.3051 3.8755 2.4728 49 1 -4.4973 1.4131 2.2088 50 1 -2.1918 0.6470 1.8440 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012670663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:30 Heat of formation + Delta-G solvation = -75.855193 kcal Electronic energy + Delta-G solvation = -32393.288338 eV Core-core repulsion = 27967.488765 eV Total energy + Delta-G solvation = -4425.799573 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.29585 -41.42811 -40.67619 -38.73928 -38.24013 -37.26038 -35.76735 -34.51870 -33.81303 -32.36152 -31.57025 -30.58855 -29.67732 -27.76017 -26.79558 -25.01258 -24.21734 -23.52836 -22.66699 -22.09275 -21.65255 -20.37269 -20.15520 -19.38865 -18.83677 -18.16216 -17.56264 -17.14379 -16.91338 -16.72458 -16.54721 -16.08525 -16.02638 -15.65177 -15.34755 -15.11873 -14.98333 -14.95224 -14.58153 -14.45579 -14.34641 -14.23012 -14.11331 -13.94846 -13.52427 -13.46020 -13.33672 -13.05368 -12.92904 -12.76063 -12.42039 -12.37847 -12.26393 -12.09073 -11.96215 -11.80658 -11.69729 -11.61227 -11.50606 -11.23520 -11.07556 -10.83425 -10.21672 -10.14744 -9.58544 -9.36058 -8.54998 -6.40563 -0.22149 0.28720 1.34919 1.36139 1.38719 1.46477 1.56751 1.71475 2.27628 2.34790 2.42806 2.70510 2.98891 3.28596 3.68292 3.70192 3.74989 3.84622 3.85600 3.90972 3.96575 4.07861 4.10681 4.21110 4.23142 4.25343 4.39738 4.41728 4.52487 4.55180 4.59273 4.66243 4.79620 4.85024 4.93841 4.97411 5.03650 5.05116 5.09789 5.15417 5.17238 5.18534 5.23407 5.33147 5.39136 5.47545 5.49848 5.52458 5.67501 5.89313 6.20605 6.37256 6.50135 6.79900 7.06676 7.55345 8.57837 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.002089 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.720334 B =13403.145908 C =15022.307453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.134 3.866 3 H 0.100 0.900 4 C -0.130 4.130 5 C -0.119 4.119 6 C -0.128 4.128 7 C 0.143 3.857 8 H 0.090 0.910 9 C -0.139 4.139 10 N -0.606 5.606 11 C 0.516 3.484 12 O -0.551 6.551 13 C -0.009 4.009 14 O -0.314 6.314 15 C 0.163 3.837 16 C -0.160 4.160 17 C -0.026 4.026 18 C -0.164 4.164 19 C 0.452 3.548 20 O -0.580 6.580 21 O -0.246 6.246 22 C -0.408 4.408 23 H 0.054 0.946 24 C 0.013 3.987 25 N -0.916 5.916 26 Si 0.986 3.014 27 H -0.256 1.256 28 H -0.266 1.266 29 H -0.240 1.240 30 C -0.028 4.028 31 C -0.206 4.206 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.040 0.960 44 H 0.161 0.839 45 H 0.125 0.875 46 H 0.153 0.847 47 H 0.134 0.866 48 H 0.290 0.710 49 H 0.145 0.855 50 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.351 -4.743 -15.720 38.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C 0.032 3.968 3 H 0.118 0.882 4 C -0.168 4.168 5 C -0.157 4.157 6 C -0.166 4.166 7 C 0.041 3.959 8 H 0.107 0.893 9 C -0.196 4.196 10 N -0.342 5.342 11 C 0.304 3.696 12 O -0.429 6.429 13 C -0.084 4.084 14 O -0.227 6.227 15 C 0.116 3.884 16 C -0.178 4.178 17 C -0.044 4.044 18 C -0.165 4.165 19 C 0.302 3.698 20 O -0.478 6.478 21 O -0.155 6.155 22 C -0.484 4.484 23 H 0.072 0.928 24 C -0.187 4.187 25 N -0.555 5.555 26 Si 0.804 3.196 27 H -0.181 1.181 28 H -0.191 1.191 29 H -0.163 1.163 30 C -0.046 4.046 31 C -0.224 4.224 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.177 0.823 45 H 0.142 0.858 46 H 0.170 0.830 47 H 0.152 0.848 48 H 0.100 0.900 49 H 0.163 0.837 50 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 34.319 -5.292 -14.998 37.825 hybrid contribution -0.793 0.102 0.320 0.861 sum 33.526 -5.190 -14.678 36.965 Atomic orbital electron populations 1.23672 0.94081 1.03205 1.06727 1.21440 0.94958 0.96885 0.83508 0.88173 1.21931 0.96238 1.01146 0.97468 1.21542 0.95604 1.00967 0.97556 1.21980 1.01894 0.98829 0.93936 1.21413 0.79202 0.99280 0.96003 0.89257 1.22129 1.00569 1.00586 0.96330 1.48292 1.06962 1.58552 1.20426 1.20423 0.86609 0.81589 0.80977 1.90781 1.77130 1.31721 1.43252 1.25673 0.92505 1.00014 0.90216 1.86065 1.23484 1.65551 1.47550 1.19274 0.83357 0.92061 0.93697 1.20419 0.93332 1.04877 0.99215 1.21019 0.93895 0.92465 0.97035 1.19106 0.90689 1.05151 1.01600 1.21613 0.88436 0.78611 0.81101 1.90641 1.65687 1.58738 1.32705 1.83525 1.28836 1.53570 1.49531 1.20343 0.86750 1.27735 1.13560 0.92821 1.25692 0.95931 0.95079 1.02037 1.69708 1.12788 1.32715 1.40292 0.85059 0.80072 0.77947 0.76542 1.18059 1.19072 1.16332 1.21393 0.93437 0.95701 0.94062 1.21451 0.96124 1.01966 1.02896 0.88164 0.87621 0.91158 0.88340 0.92499 0.90458 0.90737 0.89468 0.92985 0.92422 0.91862 0.94088 0.82276 0.85780 0.82963 0.84792 0.89965 0.83727 0.80666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.80 7.03 71.98 0.51 -0.29 16 2 C 0.13 0.72 3.45 44.83 0.15 0.88 16 3 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 4 C -0.13 -0.58 5.35 30.53 0.16 -0.42 16 5 C -0.12 -0.54 5.89 30.62 0.18 -0.36 16 6 C -0.13 -1.05 5.38 30.67 0.16 -0.89 16 7 C 0.14 1.66 3.49 44.98 0.16 1.81 16 8 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 9 C -0.14 -2.37 7.62 71.99 0.55 -1.82 16 10 N -0.61 -7.35 2.98 -772.11 -2.30 -9.65 16 11 C 0.52 9.57 7.27 87.65 0.64 10.21 16 12 O -0.55 -15.13 12.16 15.95 0.19 -14.94 16 13 C -0.01 -0.13 3.05 71.23 0.22 0.09 16 14 O -0.31 -7.21 9.66 -71.21 -0.69 -7.90 16 15 C 0.16 3.88 6.70 22.65 0.15 4.03 16 16 C -0.16 -4.30 9.97 22.33 0.22 -4.08 16 17 C -0.03 -0.85 9.59 22.52 0.22 -0.63 16 18 C -0.16 -6.22 5.88 -20.09 -0.12 -6.34 16 19 C 0.45 23.09 7.83 70.24 0.55 23.64 16 20 O -0.58 -33.87 15.59 19.72 0.31 -33.57 16 21 O -0.25 -13.34 7.81 10.86 0.08 -13.25 16 22 C -0.41 -25.54 10.11 67.95 0.69 -24.85 16 23 H 0.05 3.85 7.09 -2.91 -0.02 3.83 16 24 C 0.01 0.73 5.49 84.89 0.47 1.19 16 25 N -0.92 -55.46 13.96 21.63 0.30 -55.16 16 26 Si 0.99 42.03 28.62 68.60 1.96 43.99 16 27 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 28 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 29 H -0.24 -9.43 7.11 99.48 0.71 -8.72 16 30 C -0.03 -0.81 9.61 22.52 0.22 -0.59 16 31 C -0.21 -4.34 9.01 22.32 0.20 -4.14 16 32 H 0.10 0.31 3.00 -26.89 -0.08 0.23 16 33 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.07 0.39 6.60 -2.39 -0.02 0.37 16 35 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 41 H 0.06 1.30 6.40 -2.39 -0.02 1.29 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 43 H 0.04 0.87 7.13 -2.39 -0.02 0.86 16 44 H 0.16 1.51 3.46 -18.41 -0.06 1.45 16 45 H 0.13 1.13 6.40 -2.39 -0.02 1.11 16 46 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 47 H 0.13 4.56 7.64 -2.91 -0.02 4.54 16 48 H 0.29 15.74 8.31 -92.70 -0.77 14.97 16 49 H 0.14 4.11 7.60 -2.91 -0.02 4.09 16 50 H 0.18 1.96 5.63 -2.91 -0.02 1.95 16 Total: -1.00 -85.17 393.54 6.03 -79.14 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.84 Total: 13.89 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.32 Total: -2.57 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -2.00 Total: -64.80 kcal Atomic # 8 Polarization: -69.55 SS G_CDS: -0.10 Total: -69.66 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.96 Total: 43.99 kcal Total: -85.17 6.03 -79.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012670663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.283 kcal (2) G-P(sol) polarization free energy of solvation -85.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds