Wall clock time and date at job start Tue Mar 31 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.70514 * 2 1 4 4 C 1.53629 * 109.66442 * 120.58760 * 2 1 3 5 5 C 1.53045 * 109.24386 * 174.54791 * 4 2 1 6 6 C 1.53043 * 109.53627 * 298.51453 * 5 4 2 7 7 C 1.53190 * 109.31509 * 61.36111 * 6 5 4 8 8 H 1.08993 * 109.58793 * 185.57744 * 7 6 5 9 9 C 1.53006 * 109.70112 * 65.22254 * 7 6 5 10 10 N 1.46922 * 108.77726 * 305.36562 * 7 6 5 11 11 C 1.34778 * 120.63152 * 233.58353 * 10 7 6 12 12 O 1.21283 * 120.00093 * 185.57306 * 11 10 7 13 13 C 1.50692 * 119.99908 * 5.57806 * 11 10 7 14 14 O 1.42903 * 109.47323 * 176.50555 * 13 11 10 15 15 C 1.35700 * 116.99905 * 179.97438 * 14 13 11 16 16 C 1.39025 * 119.90166 * 180.02562 * 15 14 13 17 17 C 1.37664 * 120.09658 * 180.02562 * 16 15 14 18 18 C 1.39823 * 119.90375 * 359.97134 * 17 16 15 19 19 C 1.47419 * 120.09608 * 180.02562 * 18 17 16 20 20 O 1.21544 * 119.99990 * 0.02562 * 19 18 17 21 21 O 1.34772 * 120.00104 * 179.72272 * 19 18 17 22 22 C 1.34866 * 116.99917 * 179.97438 * 21 19 18 23 23 H 1.07994 * 119.99706 * 0.02562 * 22 21 19 24 24 C 1.38792 * 119.99838 * 180.02562 * 22 21 19 25 25 N 1.31436 * 119.99898 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00154 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47146 * 60.00122 * 26 24 22 28 28 H 1.48500 * 109.47141 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.46943 * 299.99980 * 26 24 22 30 30 C 1.39823 * 119.80947 * 0.27857 * 18 17 16 31 31 C 1.37673 * 119.90135 * 359.44511 * 30 18 17 32 32 H 1.08997 * 109.47040 * 172.99620 * 1 2 3 33 33 H 1.09006 * 109.46866 * 292.99731 * 1 2 3 34 34 H 1.08992 * 109.46951 * 52.99286 * 1 2 3 35 35 H 1.09005 * 109.63536 * 54.55446 * 4 2 1 36 36 H 1.08996 * 109.43327 * 294.41705 * 4 2 1 37 37 H 1.08993 * 109.46121 * 178.49107 * 5 4 2 38 38 H 1.08998 * 109.44602 * 58.52755 * 5 4 2 39 39 H 1.08997 * 109.49213 * 301.40992 * 6 5 4 40 40 H 1.08996 * 109.52266 * 181.33040 * 6 5 4 41 41 H 1.09000 * 109.46838 * 300.63719 * 9 7 6 42 42 H 1.09000 * 109.46801 * 60.63481 * 9 7 6 43 43 H 1.09001 * 109.47000 * 180.64201 * 9 7 6 44 44 H 1.09000 * 109.47516 * 56.50127 * 13 11 10 45 45 H 1.09003 * 109.47053 * 296.50415 * 13 11 10 46 46 H 1.08004 * 119.94917 * 359.97438 * 16 15 14 47 47 H 1.08005 * 120.04849 * 179.97438 * 17 16 15 48 48 H 0.96997 * 119.99891 * 180.02562 * 25 24 22 49 49 H 1.07999 * 120.04967 * 179.69954 * 30 18 17 50 50 H 1.08001 * 119.95226 * 180.26858 * 31 30 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2454 5 6 3.5712 -0.8497 1.1678 6 6 3.9615 -1.6628 -0.0687 7 6 3.4656 -0.9422 -1.3263 8 1 3.6532 -1.5639 -2.2016 9 6 4.1982 0.3925 -1.4786 10 7 2.0226 -0.6997 -1.1944 11 6 1.1675 -1.1063 -2.1535 12 8 -0.0071 -0.8124 -2.0831 13 6 1.6707 -1.9263 -3.3134 14 8 0.5706 -2.3004 -4.1452 15 6 0.8539 -3.0471 -5.2423 16 6 -0.1708 -3.4442 -6.0938 17 6 0.1119 -4.2022 -7.2076 18 6 1.4320 -4.5722 -7.4823 19 6 1.7397 -5.3834 -8.6742 20 8 0.8452 -5.7312 -9.4200 21 8 3.0135 -5.7342 -8.9401 22 6 3.2259 -6.4769 -10.0456 23 1 2.3940 -6.7632 -10.6718 24 6 4.5137 -6.8734 -10.3783 25 7 5.5261 -6.5254 -9.6158 26 14 4.8082 -7.9016 -11.9098 27 1 4.3431 -7.1534 -13.1052 28 1 6.2589 -8.1904 -12.0408 29 1 4.0567 -9.1778 -11.8012 30 6 2.4589 -4.1750 -6.6204 31 6 2.1679 -3.4123 -5.5118 32 1 -0.3633 -1.0200 -0.1253 33 1 -0.3633 0.4015 0.9461 34 1 -0.3633 0.6185 -0.8206 35 1 1.6096 -1.7336 1.2892 36 1 1.7689 -0.1770 2.1387 37 1 3.9443 -1.3478 2.0626 38 1 4.0064 0.1472 1.0990 39 1 3.5061 -2.6515 -0.0125 40 1 5.0460 -1.7636 -0.1109 41 1 4.0134 1.0107 -0.6001 42 1 5.2684 0.2104 -1.5762 43 1 3.8345 0.9071 -2.3680 44 1 2.1636 -2.8230 -2.9377 45 1 2.3811 -1.3373 -3.8936 46 1 -1.1903 -3.1583 -5.8806 47 1 -0.6848 -4.5107 -7.8684 48 1 6.4262 -6.8022 -9.8485 49 1 3.4793 -4.4627 -6.8262 50 1 2.9610 -3.1014 -4.8479 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012670668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:35 Heat of formation + Delta-G solvation = -115.008948 kcal Electronic energy + Delta-G solvation = -32008.264289 eV Core-core repulsion = 27580.766882 eV Total energy + Delta-G solvation = -4427.497407 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.21790 -40.03896 -38.95367 -38.03080 -36.90945 -35.05820 -34.09523 -33.30099 -32.21616 -31.06048 -30.33827 -29.68104 -28.08456 -26.96809 -25.51529 -24.09051 -23.24619 -22.79433 -22.19102 -21.16155 -20.13612 -18.87825 -18.40412 -17.75478 -17.17272 -16.88083 -16.76638 -16.30696 -15.72956 -15.51987 -15.06871 -14.93089 -14.58201 -14.48523 -14.38513 -14.31859 -14.11170 -13.85451 -13.57509 -13.29481 -13.23523 -13.09665 -12.93451 -12.59214 -12.44485 -12.31736 -12.21188 -12.06671 -11.92463 -11.55293 -11.50138 -11.38345 -11.31985 -11.09492 -10.99440 -10.93821 -10.70875 -10.48825 -10.40247 -9.85916 -9.37290 -9.08709 -8.99386 -8.85059 -8.61662 -8.06017 -6.47312 -4.09922 1.24267 1.58377 2.15166 2.23584 3.13396 3.16890 3.20546 3.21381 3.45894 3.91937 4.01589 4.10400 4.31053 4.32656 4.37389 4.47216 4.57178 4.61707 4.64650 4.74811 4.78057 4.89765 4.95859 4.98748 5.02420 5.09168 5.13618 5.14600 5.34971 5.38563 5.40844 5.43036 5.50494 5.53498 5.56793 5.65330 5.66919 5.73454 5.77719 5.94593 6.01075 6.15612 6.22536 6.32625 6.44788 6.68293 6.81389 6.96107 7.02427 7.34370 7.39284 7.82787 7.91104 8.69275 9.01906 9.82185 10.70576 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.001868 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.361220 B =14985.373995 C =16384.921327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.146 3.854 3 H 0.073 0.927 4 C -0.132 4.132 5 C -0.122 4.122 6 C -0.131 4.131 7 C 0.128 3.872 8 H 0.093 0.907 9 C -0.166 4.166 10 N -0.604 5.604 11 C 0.521 3.479 12 O -0.507 6.507 13 C 0.038 3.962 14 O -0.290 6.290 15 C 0.136 3.864 16 C -0.159 4.159 17 C -0.030 4.030 18 C -0.123 4.123 19 C 0.436 3.564 20 O -0.555 6.555 21 O -0.207 6.207 22 C -0.374 4.374 23 H 0.097 0.903 24 C 0.041 3.959 25 N -0.862 5.862 26 Si 0.946 3.054 27 H -0.269 1.269 28 H -0.279 1.279 29 H -0.269 1.269 30 C -0.031 4.031 31 C -0.222 4.222 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.135 0.865 47 H 0.142 0.858 48 H 0.271 0.729 49 H 0.145 0.855 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 14.366 23.957 27.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.044 3.956 3 H 0.091 0.909 4 C -0.170 4.170 5 C -0.159 4.159 6 C -0.169 4.169 7 C 0.025 3.975 8 H 0.111 0.889 9 C -0.224 4.224 10 N -0.340 5.340 11 C 0.308 3.692 12 O -0.381 6.381 13 C -0.041 4.041 14 O -0.202 6.202 15 C 0.090 3.910 16 C -0.177 4.177 17 C -0.049 4.049 18 C -0.125 4.125 19 C 0.285 3.715 20 O -0.454 6.454 21 O -0.114 6.114 22 C -0.450 4.450 23 H 0.115 0.885 24 C -0.164 4.164 25 N -0.499 5.499 26 Si 0.770 3.230 27 H -0.194 1.194 28 H -0.203 1.203 29 H -0.194 1.194 30 C -0.049 4.049 31 C -0.240 4.240 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.153 0.847 47 H 0.160 0.840 48 H 0.081 0.919 49 H 0.163 0.837 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.287 14.468 23.867 27.939 hybrid contribution 0.690 -0.563 -0.678 1.119 sum -0.597 13.906 23.189 27.046 Atomic orbital electron populations 1.22213 0.92423 1.04089 1.01037 1.21372 0.95828 0.95043 0.83347 0.90934 1.22103 0.95955 1.01549 0.97410 1.21559 0.95720 1.00724 0.97925 1.21941 1.01581 0.99330 0.94078 1.21410 0.79480 0.97363 0.99258 0.88928 1.22190 1.00669 0.96791 1.02732 1.48147 1.06796 1.58723 1.20373 1.20030 0.86275 0.80101 0.82838 1.90800 1.16721 1.54976 1.75601 1.22554 0.89912 0.99831 0.91753 1.86069 1.33019 1.66744 1.34375 1.19217 0.93731 0.91494 0.86517 1.20256 0.98519 1.03521 0.95430 1.21059 0.95873 0.93133 0.94795 1.19357 0.93981 1.02831 0.96284 1.20670 0.82881 0.82081 0.85896 1.90629 1.47713 1.56786 1.50296 1.83894 1.25604 1.59178 1.42715 1.21250 0.94445 1.28970 1.00348 0.88548 1.25364 0.94122 0.97592 0.99275 1.69968 0.99530 1.43084 1.37274 0.85706 0.77515 0.79693 0.80083 1.19404 1.20349 1.19397 1.21408 1.00266 0.92088 0.91137 1.21124 0.94889 1.06315 1.01713 0.91402 0.93640 0.90416 0.91309 0.90689 0.91475 0.91406 0.91161 0.90248 0.91726 0.90898 0.91997 0.89037 0.88947 0.84731 0.84049 0.91927 0.83686 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 7.62 37.16 0.28 -0.99 16 2 C 0.15 1.06 3.10 -67.37 -0.21 0.85 16 3 H 0.07 0.47 7.49 -51.93 -0.39 0.08 16 4 C -0.13 -0.73 5.40 -26.38 -0.14 -0.87 16 5 C -0.12 -0.54 5.68 -26.69 -0.15 -0.69 16 6 C -0.13 -0.61 5.56 -26.61 -0.15 -0.76 16 7 C 0.13 0.71 3.12 -67.60 -0.21 0.49 16 8 H 0.09 0.45 5.92 -51.93 -0.31 0.14 16 9 C -0.17 -0.78 9.03 37.16 0.34 -0.44 16 10 N -0.60 -4.75 2.67 -157.48 -0.42 -5.17 16 11 C 0.52 5.65 7.57 -10.99 -0.08 5.56 16 12 O -0.51 -7.22 12.06 -14.33 -0.17 -7.40 16 13 C 0.04 0.39 3.56 36.00 0.13 0.51 16 14 O -0.29 -4.05 9.66 -38.69 -0.37 -4.42 16 15 C 0.14 2.01 6.70 -39.00 -0.26 1.75 16 16 C -0.16 -2.43 9.97 -39.50 -0.39 -2.83 16 17 C -0.03 -0.53 9.59 -39.20 -0.38 -0.91 16 18 C -0.12 -2.52 5.87 -104.97 -0.62 -3.14 16 19 C 0.44 11.22 7.83 34.47 0.27 11.49 16 20 O -0.56 -15.39 15.59 -19.30 -0.30 -15.69 16 21 O -0.21 -5.92 8.98 -21.78 -0.20 -6.12 16 22 C -0.37 -11.02 9.65 30.94 0.30 -10.72 16 23 H 0.10 2.86 6.86 -52.49 -0.36 2.50 16 24 C 0.04 1.13 5.49 -17.52 -0.10 1.04 16 25 N -0.86 -24.65 13.67 55.49 0.76 -23.89 16 26 Si 0.95 21.06 29.55 -169.99 -5.02 16.04 16 27 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 28 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 29 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 30 C -0.03 -0.55 9.61 -39.20 -0.38 -0.92 16 31 C -0.22 -3.18 9.01 -39.50 -0.36 -3.54 16 32 H 0.07 0.75 6.83 -51.93 -0.35 0.40 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.86 6.67 -51.93 -0.35 0.52 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.27 6.50 -51.93 -0.34 -0.07 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.06 0.29 5.73 -51.93 -0.30 -0.01 16 42 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.75 7.28 -51.93 -0.38 0.37 16 45 H 0.09 0.76 7.39 -51.93 -0.38 0.37 16 46 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 47 H 0.14 2.42 7.64 -52.48 -0.40 2.02 16 48 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.15 2.70 7.60 -52.49 -0.40 2.30 16 50 H 0.13 1.38 6.28 -52.49 -0.33 1.05 16 LS Contribution 401.55 15.07 6.05 6.05 Total: -1.00 -35.08 401.55 -9.01 -44.09 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.22 Total: 0.62 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -2.11 Total: -4.11 kcal Atomic # 7 Polarization: -29.40 SS G_CDS: 0.34 Total: -29.06 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.04 Total: -33.62 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.08 -9.01 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012670668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.923 kcal (2) G-P(sol) polarization free energy of solvation -35.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds