Wall clock time and date at job start Tue Mar 31 2020 05:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.70514 * 2 1 4 4 C 1.53629 * 109.66442 * 120.58760 * 2 1 3 5 5 C 1.53045 * 109.24386 * 174.54791 * 4 2 1 6 6 C 1.53043 * 109.53627 * 298.51453 * 5 4 2 7 7 C 1.53190 * 109.31509 * 61.36111 * 6 5 4 8 8 H 1.08993 * 109.58793 * 185.57744 * 7 6 5 9 9 C 1.53006 * 109.70112 * 65.22254 * 7 6 5 10 10 N 1.46922 * 108.77726 * 305.36562 * 7 6 5 11 11 C 1.34778 * 120.63152 * 233.58353 * 10 7 6 12 12 O 1.21283 * 120.00093 * 185.57306 * 11 10 7 13 13 C 1.50692 * 119.99908 * 5.57806 * 11 10 7 14 14 O 1.42903 * 109.47323 * 176.50555 * 13 11 10 15 15 C 1.35700 * 116.99905 * 179.97438 * 14 13 11 16 16 C 1.39025 * 119.90166 * 180.02562 * 15 14 13 17 17 C 1.37664 * 120.09658 * 180.02562 * 16 15 14 18 18 C 1.39823 * 119.90375 * 359.97134 * 17 16 15 19 19 C 1.47419 * 120.09608 * 180.02562 * 18 17 16 20 20 O 1.21544 * 119.99990 * 0.02562 * 19 18 17 21 21 O 1.34772 * 120.00104 * 179.72272 * 19 18 17 22 22 C 1.34866 * 116.99917 * 179.97438 * 21 19 18 23 23 H 1.07994 * 119.99706 * 0.02562 * 22 21 19 24 24 C 1.38792 * 119.99838 * 180.02562 * 22 21 19 25 25 N 1.31436 * 119.99898 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00154 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47146 * 60.00122 * 26 24 22 28 28 H 1.48500 * 109.47141 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.46943 * 299.99980 * 26 24 22 30 30 C 1.39823 * 119.80947 * 0.27857 * 18 17 16 31 31 C 1.37673 * 119.90135 * 359.44511 * 30 18 17 32 32 H 1.08997 * 109.47040 * 172.99620 * 1 2 3 33 33 H 1.09006 * 109.46866 * 292.99731 * 1 2 3 34 34 H 1.08992 * 109.46951 * 52.99286 * 1 2 3 35 35 H 1.09005 * 109.63536 * 54.55446 * 4 2 1 36 36 H 1.08996 * 109.43327 * 294.41705 * 4 2 1 37 37 H 1.08993 * 109.46121 * 178.49107 * 5 4 2 38 38 H 1.08998 * 109.44602 * 58.52755 * 5 4 2 39 39 H 1.08997 * 109.49213 * 301.40992 * 6 5 4 40 40 H 1.08996 * 109.52266 * 181.33040 * 6 5 4 41 41 H 1.09000 * 109.46838 * 300.63719 * 9 7 6 42 42 H 1.09000 * 109.46801 * 60.63481 * 9 7 6 43 43 H 1.09001 * 109.47000 * 180.64201 * 9 7 6 44 44 H 1.09000 * 109.47516 * 56.50127 * 13 11 10 45 45 H 1.09003 * 109.47053 * 296.50415 * 13 11 10 46 46 H 1.08004 * 119.94917 * 359.97438 * 16 15 14 47 47 H 1.08005 * 120.04849 * 179.97438 * 17 16 15 48 48 H 0.96997 * 119.99891 * 180.02562 * 25 24 22 49 49 H 1.07999 * 120.04967 * 179.69954 * 30 18 17 50 50 H 1.08001 * 119.95226 * 180.26858 * 31 30 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2454 5 6 3.5712 -0.8497 1.1678 6 6 3.9615 -1.6628 -0.0687 7 6 3.4656 -0.9422 -1.3263 8 1 3.6532 -1.5639 -2.2016 9 6 4.1982 0.3925 -1.4786 10 7 2.0226 -0.6997 -1.1944 11 6 1.1675 -1.1063 -2.1535 12 8 -0.0071 -0.8124 -2.0831 13 6 1.6707 -1.9263 -3.3134 14 8 0.5706 -2.3004 -4.1452 15 6 0.8539 -3.0471 -5.2423 16 6 -0.1708 -3.4442 -6.0938 17 6 0.1119 -4.2022 -7.2076 18 6 1.4320 -4.5722 -7.4823 19 6 1.7397 -5.3834 -8.6742 20 8 0.8452 -5.7312 -9.4200 21 8 3.0135 -5.7342 -8.9401 22 6 3.2259 -6.4769 -10.0456 23 1 2.3940 -6.7632 -10.6718 24 6 4.5137 -6.8734 -10.3783 25 7 5.5261 -6.5254 -9.6158 26 14 4.8082 -7.9016 -11.9098 27 1 4.3431 -7.1534 -13.1052 28 1 6.2589 -8.1904 -12.0408 29 1 4.0567 -9.1778 -11.8012 30 6 2.4589 -4.1750 -6.6204 31 6 2.1679 -3.4123 -5.5118 32 1 -0.3633 -1.0200 -0.1253 33 1 -0.3633 0.4015 0.9461 34 1 -0.3633 0.6185 -0.8206 35 1 1.6096 -1.7336 1.2892 36 1 1.7689 -0.1770 2.1387 37 1 3.9443 -1.3478 2.0626 38 1 4.0064 0.1472 1.0990 39 1 3.5061 -2.6515 -0.0125 40 1 5.0460 -1.7636 -0.1109 41 1 4.0134 1.0107 -0.6001 42 1 5.2684 0.2104 -1.5762 43 1 3.8345 0.9071 -2.3680 44 1 2.1636 -2.8230 -2.9377 45 1 2.3811 -1.3373 -3.8936 46 1 -1.1903 -3.1583 -5.8806 47 1 -0.6848 -4.5107 -7.8684 48 1 6.4262 -6.8022 -9.8485 49 1 3.4793 -4.4627 -6.8262 50 1 2.9610 -3.1014 -4.8479 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012670668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:34 Heat of formation + Delta-G solvation = -134.614257 kcal Electronic energy + Delta-G solvation = -32009.114439 eV Core-core repulsion = 27580.766882 eV Total energy + Delta-G solvation = -4428.347557 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.177 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.98794 -41.35825 -40.66152 -38.88177 -38.17705 -37.11195 -34.66040 -34.32822 -33.87349 -32.33729 -31.58652 -30.46409 -28.94069 -27.53812 -27.44076 -24.86471 -24.52983 -23.89012 -23.02296 -21.98612 -21.56587 -19.91101 -19.57072 -19.48354 -18.83353 -17.72520 -17.57190 -17.32411 -16.93334 -16.62125 -16.54259 -16.17925 -16.03372 -15.73665 -15.61890 -15.05263 -14.93063 -14.79006 -14.58740 -14.47397 -14.20799 -14.02544 -13.76870 -13.68191 -13.62550 -13.41301 -13.25223 -13.11826 -12.90380 -12.74843 -12.52069 -12.43584 -12.18089 -12.12498 -12.11758 -12.01350 -11.89419 -11.79022 -11.51517 -11.31974 -11.14766 -10.70735 -10.18181 -10.15275 -9.62357 -9.40026 -8.56456 -6.32962 -0.21262 0.27973 1.34514 1.35555 1.38848 1.45713 1.50167 1.76821 2.10762 2.35235 2.71566 2.74396 3.03869 3.28451 3.64250 3.73445 3.81719 3.85388 3.93013 3.97267 4.01370 4.04459 4.16816 4.19499 4.27296 4.30908 4.41564 4.44249 4.50722 4.63785 4.68535 4.68994 4.83199 4.94848 4.96262 5.02640 5.02851 5.06116 5.10709 5.12876 5.17402 5.22794 5.24681 5.28768 5.35129 5.48107 5.50705 5.54414 5.66662 5.80945 6.17426 6.32921 6.60828 6.88325 7.06868 7.72560 8.63865 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.001868 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.361220 B =14985.373995 C =16384.921327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.143 3.857 3 H 0.085 0.915 4 C -0.127 4.127 5 C -0.120 4.120 6 C -0.130 4.130 7 C 0.121 3.879 8 H 0.104 0.896 9 C -0.163 4.163 10 N -0.596 5.596 11 C 0.515 3.485 12 O -0.552 6.552 13 C 0.028 3.972 14 O -0.301 6.301 15 C 0.156 3.844 16 C -0.156 4.156 17 C -0.027 4.027 18 C -0.162 4.162 19 C 0.436 3.564 20 O -0.586 6.586 21 O -0.231 6.231 22 C -0.421 4.421 23 H 0.081 0.919 24 C -0.001 4.001 25 N -0.896 5.896 26 Si 1.018 2.982 27 H -0.263 1.263 28 H -0.257 1.257 29 H -0.262 1.262 30 C -0.030 4.030 31 C -0.205 4.205 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.052 0.948 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.157 0.843 47 H 0.139 0.861 48 H 0.281 0.719 49 H 0.132 0.868 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.268 15.324 25.910 30.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.041 3.959 3 H 0.102 0.898 4 C -0.165 4.165 5 C -0.157 4.157 6 C -0.168 4.168 7 C 0.019 3.981 8 H 0.122 0.878 9 C -0.221 4.221 10 N -0.331 5.331 11 C 0.302 3.698 12 O -0.430 6.430 13 C -0.049 4.049 14 O -0.213 6.213 15 C 0.110 3.890 16 C -0.175 4.175 17 C -0.045 4.045 18 C -0.163 4.163 19 C 0.286 3.714 20 O -0.486 6.486 21 O -0.139 6.139 22 C -0.497 4.497 23 H 0.098 0.902 24 C -0.202 4.202 25 N -0.532 5.532 26 Si 0.836 3.164 27 H -0.187 1.187 28 H -0.180 1.180 29 H -0.187 1.187 30 C -0.049 4.049 31 C -0.223 4.223 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.071 0.929 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.175 0.825 47 H 0.156 0.844 48 H 0.090 0.910 49 H 0.150 0.850 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.501 15.450 25.871 30.138 hybrid contribution 0.054 -0.674 -1.013 1.217 sum 0.555 14.777 24.859 28.924 Atomic orbital electron populations 1.22055 0.94061 1.02050 1.00812 1.21477 0.94517 0.95980 0.83946 0.89758 1.22060 0.96887 1.00694 0.96843 1.21565 0.94565 1.01358 0.98237 1.21950 1.02507 0.98733 0.93579 1.21694 0.77814 0.98299 1.00338 0.87810 1.22175 1.01394 0.96082 1.02431 1.48247 1.07668 1.57510 1.19631 1.20255 0.86018 0.80080 0.83423 1.90803 1.18545 1.56886 1.76736 1.22932 0.89251 1.01332 0.91433 1.86077 1.35167 1.66019 1.34055 1.19274 0.93573 0.89963 0.86190 1.20436 1.00020 1.02526 0.94470 1.21034 0.94547 0.93339 0.95600 1.19220 0.96074 1.05210 0.95845 1.21707 0.81782 0.81123 0.86767 1.90575 1.48212 1.57995 1.51832 1.83912 1.27051 1.60045 1.42899 1.21436 0.95095 1.31557 1.01579 0.90153 1.26533 0.93039 0.98080 1.02583 1.70039 1.00211 1.43922 1.39060 0.84686 0.78496 0.77762 0.75420 1.18720 1.18046 1.18690 1.21322 0.98973 0.92672 0.91896 1.21388 0.95993 1.04332 1.00581 0.93825 0.92032 0.92880 0.92595 0.89440 0.90678 0.90472 0.91938 0.88588 0.91494 0.89372 0.92890 0.86374 0.86294 0.82519 0.84353 0.90976 0.84976 0.81082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 7.62 71.98 0.55 -1.83 16 2 C 0.14 1.83 3.10 45.12 0.14 1.97 16 3 H 0.08 0.91 7.49 -2.39 -0.02 0.90 16 4 C -0.13 -1.13 5.40 30.82 0.17 -0.96 16 5 C -0.12 -0.69 5.68 30.62 0.17 -0.52 16 6 C -0.13 -0.78 5.56 30.67 0.17 -0.61 16 7 C 0.12 0.93 3.12 44.98 0.14 1.08 16 8 H 0.10 0.57 5.92 -2.39 -0.01 0.56 16 9 C -0.16 -0.99 9.03 71.98 0.65 -0.34 16 10 N -0.60 -8.13 2.67 -770.53 -2.06 -10.19 16 11 C 0.51 10.32 7.57 87.65 0.66 10.98 16 12 O -0.55 -15.65 12.06 15.97 0.19 -15.46 16 13 C 0.03 0.48 3.56 71.23 0.25 0.73 16 14 O -0.30 -7.58 9.66 -71.19 -0.69 -8.27 16 15 C 0.16 4.20 6.70 22.65 0.15 4.35 16 16 C -0.16 -4.53 9.97 22.32 0.22 -4.31 16 17 C -0.03 -0.95 9.59 22.52 0.22 -0.73 16 18 C -0.16 -6.81 5.87 -20.09 -0.12 -6.93 16 19 C 0.44 23.63 7.83 70.24 0.55 24.18 16 20 O -0.59 -34.29 15.59 19.70 0.31 -33.98 16 21 O -0.23 -13.94 8.98 10.81 0.10 -13.84 16 22 C -0.42 -25.99 9.65 67.95 0.66 -25.33 16 23 H 0.08 5.05 6.86 -2.91 -0.02 5.03 16 24 C 0.00 -0.08 5.49 84.88 0.47 0.39 16 25 N -0.90 -52.03 13.67 21.63 0.30 -51.73 16 26 Si 1.02 43.35 29.55 68.60 2.03 45.38 16 27 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 28 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 29 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 30 C -0.03 -1.07 9.61 22.52 0.22 -0.85 16 31 C -0.20 -5.30 9.01 22.32 0.20 -5.10 16 32 H 0.04 0.99 6.83 -2.39 -0.02 0.97 16 33 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.05 1.21 6.67 -2.39 -0.02 1.20 16 35 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.08 0.33 6.50 -2.39 -0.02 0.32 16 39 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.07 0.39 5.73 -2.39 -0.01 0.37 16 42 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.12 1.41 7.28 -2.39 -0.02 1.39 16 45 H 0.12 1.42 7.39 -2.39 -0.02 1.41 16 46 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 47 H 0.14 4.89 7.64 -2.91 -0.02 4.86 16 48 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 49 H 0.13 5.01 7.60 -2.91 -0.02 4.99 16 50 H 0.17 2.88 6.28 -2.91 -0.02 2.86 16 Total: -1.00 -81.55 401.55 6.60 -74.95 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.96 Total: 16.98 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 5.47 Total: -3.84 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -1.76 Total: -61.92 kcal Atomic # 8 Polarization: -71.46 SS G_CDS: -0.09 Total: -71.55 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -81.55 6.60 -74.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012670668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.661 kcal (2) G-P(sol) polarization free energy of solvation -81.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds