Wall clock time and date at job start Tue Mar 31 2020 05:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.33837 * 125.37430 * 2 1 4 4 C 1.34044 * 111.34106 * 180.02562 * 3 2 1 5 5 N 1.38840 * 125.78712 * 179.97438 * 4 3 2 6 6 C 1.36732 * 125.69682 * 179.72210 * 5 4 3 7 7 C 1.34796 * 108.19041 * 179.83086 * 6 5 4 8 8 C 1.41017 * 107.50160 * 0.42349 * 7 6 5 9 9 C 1.34798 * 107.50837 * 359.73652 * 8 7 6 10 10 C 1.38035 * 108.43010 * 359.75621 * 4 3 2 11 11 C 1.43200 * 127.35187 * 180.23143 * 10 4 3 12 12 N 4.77788 * 155.16313 * 179.58549 * 2 1 3 13 13 C 1.36012 * 125.37803 * 180.02562 * 2 1 3 14 14 C 1.47194 * 127.15570 * 359.93320 * 13 2 1 15 15 O 1.21631 * 120.00592 * 90.00064 * 14 13 2 16 16 N 1.34782 * 119.99821 * 269.99341 * 14 13 2 17 17 C 1.39124 * 120.00386 * 185.10468 * 16 14 13 18 18 C 1.39514 * 119.83263 * 34.38267 * 17 16 14 19 19 C 1.36362 * 120.16253 * 180.27611 * 18 17 16 20 20 C 1.40877 * 119.83130 * 359.48279 * 19 18 17 21 21 C 1.41139 * 120.16085 * 180.25011 * 20 19 18 22 22 H 1.07997 * 120.00299 * 205.50628 * 21 20 19 23 23 C 1.39904 * 119.99915 * 25.50559 * 21 20 19 24 24 N 1.30872 * 120.00470 * 16.70912 * 23 21 20 25 25 Si 1.86809 * 119.99821 * 196.71255 * 23 21 20 26 26 H 1.48506 * 109.47112 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47098 * 119.99815 * 25 23 21 28 28 H 1.48499 * 109.47073 * 239.99969 * 25 23 21 29 29 C 1.40872 * 119.67945 * 0.53679 * 20 19 18 30 30 C 1.36367 * 119.82818 * 359.71302 * 29 20 19 31 31 H 1.09005 * 109.47286 * 269.95985 * 1 2 3 32 32 H 1.09000 * 109.47458 * 29.95895 * 1 2 3 33 33 H 1.09002 * 109.47222 * 149.95803 * 1 2 3 34 34 H 1.07998 * 125.90134 * 359.97438 * 6 5 4 35 35 H 1.07998 * 126.24974 * 180.19049 * 7 6 5 36 36 H 1.08007 * 126.24927 * 179.71470 * 8 7 6 37 37 H 1.07995 * 125.91275 * 179.97438 * 9 8 7 38 38 H 0.97009 * 119.99537 * 5.10039 * 16 14 13 39 39 H 1.07995 * 119.92029 * 0.02562 * 18 17 16 40 40 H 1.08008 * 120.08425 * 179.70141 * 19 18 17 41 41 H 0.96999 * 120.00545 * 180.02562 * 24 23 21 42 42 H 1.07997 * 120.08968 * 179.68790 * 29 20 19 43 43 H 1.07997 * 119.91515 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2818 1.0913 0.0000 4 6 3.5822 0.7663 -0.0006 5 7 4.6430 1.6620 -0.0012 6 6 5.9689 1.3284 0.0036 7 6 6.6895 2.4676 -0.0027 8 6 5.7796 3.5449 -0.0018 9 6 4.5358 3.0253 -0.0009 10 6 3.6880 -0.6100 0.0046 11 6 4.8896 -1.3890 0.0106 12 7 5.8429 -2.0068 0.0145 13 6 2.2944 -1.1090 -0.0005 14 6 1.8526 -2.5130 0.0002 15 8 1.6691 -3.0935 -1.0527 16 7 1.6516 -3.1556 1.1678 17 6 1.3375 -4.5109 1.1710 18 6 1.8879 -5.3531 0.2044 19 6 1.5802 -6.6816 0.1978 20 6 0.7129 -7.2049 1.1768 21 6 0.3939 -8.5798 1.1796 22 1 -0.5333 -8.9182 1.6179 23 6 1.2789 -9.5044 0.6146 24 7 2.5211 -9.1639 0.3827 25 14 0.6874 -11.2250 0.1910 26 1 -0.7478 -11.3572 0.5489 27 1 0.8589 -11.4630 -1.2648 28 1 1.4809 -12.2227 0.9526 29 6 0.1607 -6.3483 2.1493 30 6 0.4735 -5.0210 2.1402 31 1 -0.3634 -0.0007 1.0277 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3634 -0.8896 -0.5145 34 1 6.3696 0.3255 0.0089 35 1 7.7670 2.5417 -0.0040 36 1 6.0330 4.5949 -0.0015 37 1 3.6142 3.5881 0.0004 38 1 1.7260 -2.6730 2.0061 39 1 2.5560 -4.9513 -0.5429 40 1 2.0032 -7.3315 -0.5540 41 1 3.1346 -9.8048 -0.0094 42 1 -0.5089 -6.7415 2.8998 43 1 0.0507 -4.3629 2.8849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012798339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:36 Heat of formation + Delta-G solvation = 101.207054 kcal Electronic energy + Delta-G solvation = -30075.486143 eV Core-core repulsion = 25861.133142 eV Total energy + Delta-G solvation = -4214.353001 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.47322 -41.61913 -39.63889 -37.33505 -36.90594 -34.55734 -33.96890 -33.80827 -32.91928 -31.16992 -29.60453 -29.45441 -29.09214 -27.00010 -25.32439 -24.41830 -23.13603 -21.81407 -21.37893 -20.96419 -20.51851 -19.63616 -19.06742 -17.80205 -17.46920 -17.36884 -16.79979 -16.21102 -15.56332 -15.26723 -14.97221 -14.75176 -14.44902 -14.32664 -14.16936 -13.95235 -13.79081 -13.66764 -13.34631 -13.24367 -13.05635 -12.93764 -12.82538 -12.71571 -12.49937 -12.11934 -11.96498 -11.88743 -11.46157 -11.18683 -11.11728 -10.73190 -10.52227 -10.18788 -9.91594 -9.75530 -9.58035 -9.18193 -9.00711 -8.80641 -8.37993 -7.58988 -7.07393 -6.78618 -4.35678 0.28157 1.09511 1.23997 2.00204 2.20013 2.37666 2.50232 2.69835 2.88941 3.04142 3.06617 3.11212 3.13619 3.23435 3.32935 3.65672 3.90020 4.24309 4.28913 4.54828 4.62197 4.69789 4.77167 4.93426 4.97691 5.08689 5.11879 5.15303 5.35723 5.63258 5.65148 5.68996 5.73854 6.07590 6.08042 6.31617 6.36806 6.65533 6.67862 6.69467 6.89964 6.97756 7.08673 7.21134 7.22613 7.52086 7.58908 7.85643 8.00259 8.09529 8.23314 8.54075 8.60969 8.82938 8.93127 10.13376 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.018950 B = 0.002107 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.181301 B =13285.761616 C =14266.690696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.055 3.945 3 O -0.159 6.159 4 C 0.286 3.714 5 N -0.375 5.375 6 C -0.004 4.004 7 C -0.173 4.173 8 C -0.177 4.177 9 C -0.010 4.010 10 C -0.099 4.099 11 C 0.274 3.726 12 N -0.388 5.388 13 C -0.154 4.154 14 C 0.567 3.433 15 O -0.509 6.509 16 N -0.632 5.632 17 C -0.014 4.014 18 C -0.082 4.082 19 C -0.155 4.155 20 C 0.108 3.892 21 C -0.455 4.455 22 H 0.080 0.920 23 C 0.073 3.927 24 N -0.788 5.788 25 Si 0.909 3.091 26 H -0.260 1.260 27 H -0.271 1.271 28 H -0.274 1.274 29 C -0.216 4.216 30 C -0.098 4.098 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.168 0.832 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.175 0.825 38 H 0.397 0.603 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.282 0.718 42 H 0.097 0.903 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.558 23.636 0.960 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 O -0.053 6.053 4 C 0.137 3.863 5 N -0.054 5.054 6 C -0.127 4.127 7 C -0.197 4.197 8 C -0.201 4.201 9 C -0.134 4.134 10 C -0.108 4.108 11 C -0.040 4.040 12 N -0.065 5.065 13 C -0.161 4.161 14 C 0.351 3.649 15 O -0.385 6.385 16 N -0.275 5.275 17 C -0.106 4.106 18 C -0.102 4.102 19 C -0.175 4.175 20 C 0.105 3.895 21 C -0.484 4.484 22 H 0.098 0.902 23 C -0.145 4.145 24 N -0.413 5.413 25 Si 0.734 3.266 26 H -0.183 1.183 27 H -0.196 1.196 28 H -0.200 1.200 29 C -0.236 4.236 30 C -0.118 4.118 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.186 0.814 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.192 0.808 38 H 0.230 0.770 39 H 0.117 0.883 40 H 0.138 0.862 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.791 22.272 0.121 22.344 hybrid contribution -0.267 -0.337 0.214 0.480 sum 1.524 21.935 0.335 21.990 Atomic orbital electron populations 1.20613 0.82332 1.05660 1.04958 1.22456 0.93586 0.80564 1.02959 1.83513 1.13261 1.35776 1.72778 1.17933 0.79651 0.86262 1.02467 1.40579 1.02585 1.05072 1.57179 1.22160 0.79112 1.01227 1.10196 1.21137 0.99838 0.91230 1.07445 1.21124 0.91504 0.99622 1.07845 1.22206 1.00833 0.80614 1.09744 1.16265 0.88701 0.87758 1.18086 1.24094 0.91899 0.93750 0.94269 1.81340 1.10405 1.06120 1.08586 1.20867 0.89831 0.95291 1.10079 1.17011 0.79414 0.83607 0.84875 1.90869 1.50138 1.66397 1.31083 1.42883 1.67648 1.09563 1.07361 1.17094 1.07731 0.80830 1.04963 1.20397 0.98763 0.93534 0.97548 1.20981 1.03136 0.93035 1.00316 1.17690 0.89885 0.93035 0.88896 1.19605 1.04572 0.91309 1.32897 0.90206 1.25966 0.94086 1.01357 0.93120 1.69845 1.03610 1.36806 1.31024 0.86244 0.80258 0.81120 0.79021 1.18320 1.19628 1.19965 1.20539 1.08201 0.93190 1.01647 1.20013 0.97669 0.95779 0.98325 0.88544 0.89235 0.87745 0.81445 0.82996 0.83198 0.80794 0.76965 0.88311 0.86173 0.90738 0.88480 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.21 36.00 0.37 -0.18 16 2 C 0.05 0.55 7.32 -35.11 -0.26 0.29 16 3 O -0.16 -1.53 10.39 7.63 0.08 -1.45 16 4 C 0.29 3.19 7.86 -14.45 -0.11 3.08 16 5 N -0.38 -3.91 2.94 -62.70 -0.18 -4.10 16 6 C 0.00 -0.04 10.60 -16.59 -0.18 -0.22 16 7 C -0.17 -1.51 10.86 -39.75 -0.43 -1.94 16 8 C -0.18 -1.36 10.86 -39.75 -0.43 -1.79 16 9 C -0.01 -0.09 11.30 -16.58 -0.19 -0.27 16 10 C -0.10 -1.32 6.23 -104.03 -0.65 -1.97 16 11 C 0.27 4.18 13.19 -22.47 -0.30 3.88 16 12 N -0.39 -6.50 18.03 41.84 0.75 -5.74 16 13 C -0.15 -2.07 6.08 -103.05 -0.63 -2.70 16 14 C 0.57 9.87 6.88 -12.62 -0.09 9.78 16 15 O -0.51 -11.05 14.82 5.25 0.08 -10.97 16 16 N -0.63 -10.90 5.30 -10.78 -0.06 -10.96 16 17 C -0.01 -0.31 6.27 -83.60 -0.52 -0.83 16 18 C -0.08 -2.06 8.57 -39.78 -0.34 -2.40 16 19 C -0.15 -4.14 8.63 -39.26 -0.34 -4.48 16 20 C 0.11 2.85 5.57 -106.80 -0.59 2.25 16 21 C -0.45 -11.89 9.04 -37.86 -0.34 -12.24 16 22 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 23 C 0.07 1.83 5.15 -17.34 -0.09 1.74 16 24 N -0.79 -20.54 10.95 55.55 0.61 -19.93 16 25 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 26 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 27 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 28 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 29 C -0.22 -5.09 9.74 -39.26 -0.38 -5.47 16 30 C -0.10 -2.06 9.90 -39.78 -0.39 -2.46 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.87 7.89 -51.93 -0.41 0.46 16 34 H 0.17 1.89 5.52 -52.49 -0.29 1.60 16 35 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.15 0.77 8.06 -52.48 -0.42 0.34 16 37 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.40 5.38 8.80 -40.82 -0.36 5.02 16 39 H 0.10 2.52 6.46 -52.49 -0.34 2.18 16 40 H 0.12 3.35 6.18 -52.48 -0.32 3.03 16 41 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 42 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 43 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -32.03 385.22 -8.07 -40.10 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.23 Total: 9.59 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -5.89 Total: -15.90 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 1.12 Total: -40.73 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.16 Total: -12.43 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.03 -8.07 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012798339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.309 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds