Wall clock time and date at job start Tue Mar 31 2020 05:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.33837 * 125.37430 * 2 1 4 4 C 1.34044 * 111.34106 * 180.02562 * 3 2 1 5 5 N 1.38840 * 125.78712 * 179.97438 * 4 3 2 6 6 C 1.36732 * 125.69682 * 179.72210 * 5 4 3 7 7 C 1.34796 * 108.19041 * 179.83086 * 6 5 4 8 8 C 1.41017 * 107.50160 * 0.42349 * 7 6 5 9 9 C 1.34798 * 107.50837 * 359.73652 * 8 7 6 10 10 C 1.38035 * 108.43010 * 359.75621 * 4 3 2 11 11 C 1.43200 * 127.35187 * 180.23143 * 10 4 3 12 12 N 4.77788 * 155.16313 * 179.58549 * 2 1 3 13 13 C 1.36012 * 125.37803 * 180.02562 * 2 1 3 14 14 C 1.47194 * 127.15570 * 359.93320 * 13 2 1 15 15 O 1.21631 * 120.00592 * 90.00064 * 14 13 2 16 16 N 1.34782 * 119.99821 * 269.99341 * 14 13 2 17 17 C 1.39124 * 120.00386 * 185.10468 * 16 14 13 18 18 C 1.39514 * 119.83263 * 34.38267 * 17 16 14 19 19 C 1.36362 * 120.16253 * 180.27611 * 18 17 16 20 20 C 1.40877 * 119.83130 * 359.48279 * 19 18 17 21 21 C 1.41139 * 120.16085 * 180.25011 * 20 19 18 22 22 H 1.07997 * 120.00299 * 205.50628 * 21 20 19 23 23 C 1.39904 * 119.99915 * 25.50559 * 21 20 19 24 24 N 1.30872 * 120.00470 * 16.70912 * 23 21 20 25 25 Si 1.86809 * 119.99821 * 196.71255 * 23 21 20 26 26 H 1.48506 * 109.47112 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47098 * 119.99815 * 25 23 21 28 28 H 1.48499 * 109.47073 * 239.99969 * 25 23 21 29 29 C 1.40872 * 119.67945 * 0.53679 * 20 19 18 30 30 C 1.36367 * 119.82818 * 359.71302 * 29 20 19 31 31 H 1.09005 * 109.47286 * 269.95985 * 1 2 3 32 32 H 1.09000 * 109.47458 * 29.95895 * 1 2 3 33 33 H 1.09002 * 109.47222 * 149.95803 * 1 2 3 34 34 H 1.07998 * 125.90134 * 359.97438 * 6 5 4 35 35 H 1.07998 * 126.24974 * 180.19049 * 7 6 5 36 36 H 1.08007 * 126.24927 * 179.71470 * 8 7 6 37 37 H 1.07995 * 125.91275 * 179.97438 * 9 8 7 38 38 H 0.97009 * 119.99537 * 5.10039 * 16 14 13 39 39 H 1.07995 * 119.92029 * 0.02562 * 18 17 16 40 40 H 1.08008 * 120.08425 * 179.70141 * 19 18 17 41 41 H 0.96999 * 120.00545 * 180.02562 * 24 23 21 42 42 H 1.07997 * 120.08968 * 179.68790 * 29 20 19 43 43 H 1.07997 * 119.91515 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2818 1.0913 0.0000 4 6 3.5822 0.7663 -0.0006 5 7 4.6430 1.6620 -0.0012 6 6 5.9689 1.3284 0.0036 7 6 6.6895 2.4676 -0.0027 8 6 5.7796 3.5449 -0.0018 9 6 4.5358 3.0253 -0.0009 10 6 3.6880 -0.6100 0.0046 11 6 4.8896 -1.3890 0.0106 12 7 5.8429 -2.0068 0.0145 13 6 2.2944 -1.1090 -0.0005 14 6 1.8526 -2.5130 0.0002 15 8 1.6691 -3.0935 -1.0527 16 7 1.6516 -3.1556 1.1678 17 6 1.3375 -4.5109 1.1710 18 6 1.8879 -5.3531 0.2044 19 6 1.5802 -6.6816 0.1978 20 6 0.7129 -7.2049 1.1768 21 6 0.3939 -8.5798 1.1796 22 1 -0.5333 -8.9182 1.6179 23 6 1.2789 -9.5044 0.6146 24 7 2.5211 -9.1639 0.3827 25 14 0.6874 -11.2250 0.1910 26 1 -0.7478 -11.3572 0.5489 27 1 0.8589 -11.4630 -1.2648 28 1 1.4809 -12.2227 0.9526 29 6 0.1607 -6.3483 2.1493 30 6 0.4735 -5.0210 2.1402 31 1 -0.3634 -0.0007 1.0277 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3634 -0.8896 -0.5145 34 1 6.3696 0.3255 0.0089 35 1 7.7670 2.5417 -0.0040 36 1 6.0330 4.5949 -0.0015 37 1 3.6142 3.5881 0.0004 38 1 1.7260 -2.6730 2.0061 39 1 2.5560 -4.9513 -0.5429 40 1 2.0032 -7.3315 -0.5540 41 1 3.1346 -9.8048 -0.0094 42 1 -0.5089 -6.7415 2.8998 43 1 0.0507 -4.3629 2.8849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012798339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:35 Heat of formation + Delta-G solvation = 83.637332 kcal Electronic energy + Delta-G solvation = -30076.248024 eV Core-core repulsion = 25861.133142 eV Total energy + Delta-G solvation = -4215.114882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.35638 -42.34583 -41.18054 -39.09521 -38.11305 -36.28203 -35.01298 -34.78422 -34.46004 -31.89175 -31.48837 -30.94223 -30.09663 -28.03595 -26.81529 -25.50060 -24.39147 -23.25614 -22.74637 -22.15160 -21.60029 -20.61331 -20.18937 -19.28422 -18.83352 -18.41991 -18.16718 -17.59518 -17.06143 -16.48075 -16.00079 -15.77288 -15.71040 -15.51976 -15.34682 -15.12935 -14.98258 -14.86519 -14.71323 -14.45225 -14.24609 -13.97042 -13.85838 -13.71190 -13.69465 -13.44486 -13.32920 -13.16930 -12.95668 -12.83539 -12.81568 -12.43353 -11.80795 -11.57444 -11.44082 -11.30338 -11.03735 -10.83100 -10.75381 -9.49901 -9.48716 -9.20111 -8.92262 -8.64010 -6.31159 -0.60609 0.24208 0.29256 0.66424 1.10640 1.12754 1.22239 1.32413 1.37479 1.52911 1.60075 1.84885 1.87193 2.00893 2.18540 2.20950 2.48642 2.71263 3.33633 3.44891 3.57853 3.72427 3.85805 3.99178 4.17151 4.22857 4.38816 4.41562 4.46217 4.46923 4.58636 4.65823 4.91179 5.00751 5.05933 5.11878 5.13783 5.16251 5.25238 5.29957 5.36590 5.63460 5.71403 5.80502 5.88190 6.00677 6.01064 6.06907 6.08446 6.28826 6.55378 6.64429 6.88983 6.95510 7.21137 8.29916 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.018950 B = 0.002107 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.181301 B =13285.761616 C =14266.690696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.096 3.904 3 O -0.140 6.140 4 C 0.311 3.689 5 N -0.384 5.384 6 C -0.040 4.040 7 C -0.165 4.165 8 C -0.176 4.176 9 C -0.011 4.011 10 C -0.129 4.129 11 C 0.287 3.713 12 N -0.433 5.433 13 C -0.189 4.189 14 C 0.577 3.423 15 O -0.558 6.558 16 N -0.625 5.625 17 C 0.002 3.998 18 C -0.100 4.100 19 C -0.181 4.181 20 C 0.075 3.925 21 C -0.488 4.488 22 H 0.085 0.915 23 C 0.028 3.972 24 N -0.828 5.828 25 Si 0.985 3.015 26 H -0.251 1.251 27 H -0.270 1.270 28 H -0.265 1.265 29 C -0.220 4.220 30 C -0.089 4.089 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.151 0.849 35 H 0.169 0.831 36 H 0.180 0.820 37 H 0.205 0.795 38 H 0.419 0.581 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.287 0.713 42 H 0.116 0.884 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 27.312 2.333 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.045 3.955 3 O -0.033 6.033 4 C 0.160 3.840 5 N -0.065 5.065 6 C -0.162 4.162 7 C -0.189 4.189 8 C -0.199 4.199 9 C -0.133 4.133 10 C -0.138 4.138 11 C -0.027 4.027 12 N -0.111 5.111 13 C -0.195 4.195 14 C 0.363 3.637 15 O -0.436 6.436 16 N -0.269 5.269 17 C -0.091 4.091 18 C -0.120 4.120 19 C -0.202 4.202 20 C 0.073 3.927 21 C -0.518 4.518 22 H 0.103 0.897 23 C -0.186 4.186 24 N -0.454 5.454 25 Si 0.805 3.195 26 H -0.174 1.174 27 H -0.195 1.195 28 H -0.190 1.190 29 C -0.240 4.240 30 C -0.108 4.108 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.108 0.892 34 H 0.169 0.831 35 H 0.187 0.813 36 H 0.198 0.802 37 H 0.221 0.779 38 H 0.256 0.744 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.097 26.011 1.532 26.057 hybrid contribution 0.362 -1.131 -0.204 1.205 sum 0.264 24.880 1.328 24.917 Atomic orbital electron populations 1.20899 0.79471 1.06463 1.07035 1.22975 0.94541 0.79352 0.98636 1.83599 1.12409 1.35056 1.72265 1.17837 0.80338 0.85635 1.00149 1.40759 1.02089 1.05812 1.57839 1.22167 0.79822 1.01340 1.12874 1.21520 1.00953 0.91037 1.05349 1.21542 0.90899 1.00702 1.06739 1.22853 1.02437 0.79534 1.08483 1.16230 0.87795 0.88722 1.21013 1.24490 0.91968 0.93108 0.93094 1.81319 1.11720 1.07468 1.10559 1.20335 0.90571 0.93762 1.14880 1.17433 0.77531 0.84912 0.83808 1.90848 1.51816 1.68144 1.32825 1.42776 1.67447 1.07908 1.08745 1.17147 1.06080 0.82511 1.03347 1.20389 0.99399 0.93599 0.98615 1.20846 1.04878 0.93545 1.00892 1.18029 0.90774 0.94132 0.89807 1.19877 1.05280 0.91845 1.34755 0.89685 1.26889 0.93815 1.05560 0.92373 1.69929 1.04896 1.38481 1.32142 0.85118 0.80014 0.75731 0.78609 1.17404 1.19455 1.19027 1.20851 1.07961 0.94058 1.01131 1.20411 0.96337 0.95557 0.98516 0.85612 0.86122 0.89185 0.83135 0.81313 0.80250 0.77856 0.74365 0.90126 0.88842 0.90299 0.86612 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.21 71.23 0.73 -0.06 16 2 C 0.10 1.63 7.32 25.17 0.18 1.82 16 3 O -0.14 -2.20 10.39 4.40 0.05 -2.15 16 4 C 0.31 6.36 7.86 83.53 0.66 7.02 16 5 N -0.38 -7.29 2.94 -462.45 -1.36 -8.65 16 6 C -0.04 -0.83 10.60 83.14 0.88 0.05 16 7 C -0.16 -2.58 10.86 22.16 0.24 -2.34 16 8 C -0.18 -2.09 10.86 22.16 0.24 -1.85 16 9 C -0.01 -0.14 11.30 83.14 0.94 0.80 16 10 C -0.13 -3.40 6.23 -19.48 -0.12 -3.52 16 11 C 0.29 9.19 13.19 88.33 1.17 10.36 16 12 N -0.43 -15.55 18.03 19.00 0.34 -15.21 16 13 C -0.19 -4.90 6.08 -18.85 -0.11 -5.01 16 14 C 0.58 20.15 6.88 86.60 0.60 20.75 16 15 O -0.56 -25.15 14.82 -4.13 -0.06 -25.21 16 16 N -0.62 -20.99 5.30 -306.25 -1.62 -22.62 16 17 C 0.00 0.10 6.27 38.60 0.24 0.34 16 18 C -0.10 -5.25 8.57 22.14 0.19 -5.06 16 19 C -0.18 -10.34 8.63 22.48 0.19 -10.15 16 20 C 0.08 4.12 5.57 -21.28 -0.12 4.00 16 21 C -0.49 -26.46 9.04 23.39 0.21 -26.25 16 22 H 0.09 4.33 7.90 -2.91 -0.02 4.31 16 23 C 0.03 1.46 5.15 85.24 0.44 1.90 16 24 N -0.83 -45.63 10.95 21.82 0.24 -45.39 16 25 Si 0.98 39.16 29.59 68.60 2.03 41.19 16 26 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 27 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 28 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 29 C -0.22 -10.29 9.74 22.48 0.22 -10.07 16 30 C -0.09 -3.57 9.90 22.14 0.22 -3.35 16 31 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.09 1.25 7.89 -2.39 -0.02 1.23 16 34 H 0.15 3.60 5.52 -2.91 -0.02 3.59 16 35 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.18 1.03 8.06 -2.91 -0.02 1.00 16 37 H 0.20 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.42 10.41 8.80 -92.70 -0.82 9.60 16 39 H 0.08 4.45 6.46 -2.91 -0.02 4.43 16 40 H 0.09 5.70 6.18 -2.91 -0.02 5.68 16 41 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 42 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 43 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -76.79 385.22 6.89 -69.90 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.29 Total: 28.77 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 6.99 Total: -20.62 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -2.40 Total: -91.87 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.02 Total: -27.36 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -76.79 6.89 -69.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012798339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.535 kcal (2) G-P(sol) polarization free energy of solvation -76.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds