Wall clock time and date at job start Tue Mar 31 2020 05:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38231 * 120.00402 * 2 1 4 4 C 1.38227 * 120.00538 * 179.73056 * 3 2 1 5 5 C 1.38241 * 119.99620 * 0.27805 * 4 3 2 6 6 C 1.50706 * 119.99893 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.47076 * 89.99587 * 6 5 4 8 8 C 1.34522 * 124.61910 * 265.02081 * 7 6 5 9 9 C 1.39124 * 109.42877 * 180.02562 * 8 7 6 10 10 C 1.41516 * 126.95580 * 179.97438 * 9 8 7 11 11 N 1.31260 * 120.00446 * 22.29646 * 10 9 8 12 12 N 1.40104 * 119.99988 * 16.60908 * 11 10 9 13 13 C 1.34773 * 120.00276 * 185.39279 * 12 11 10 14 14 O 1.22112 * 119.99856 * 0.02562 * 13 12 11 15 15 C 1.39720 * 120.00198 * 180.02562 * 13 12 11 16 16 H 1.08007 * 119.99717 * 0.02562 * 15 13 12 17 17 C 1.40037 * 120.00149 * 180.02562 * 15 13 12 18 18 N 1.30696 * 120.00177 * 359.97438 * 17 15 13 19 19 Si 1.86808 * 119.99974 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47189 * 89.99561 * 19 17 15 21 21 H 1.48502 * 109.46849 * 209.99811 * 19 17 15 22 22 H 1.48501 * 109.46876 * 329.99506 * 19 17 15 23 23 C 1.47438 * 106.07907 * 0.02562 * 9 8 7 24 24 C 1.39314 * 133.90949 * 180.02562 * 23 9 8 25 25 C 1.37930 * 119.65758 * 179.25520 * 24 23 9 26 26 C 1.38629 * 120.24513 * 0.62206 * 25 24 23 27 27 C 1.38030 * 120.64408 * 359.59378 * 26 25 24 28 28 C 1.38252 * 124.61461 * 84.72871 * 7 6 5 29 29 C 1.38234 * 119.99909 * 359.97438 * 5 4 3 30 30 C 1.38231 * 120.00134 * 359.97438 * 29 5 4 31 31 H 1.08994 * 109.47571 * 89.99241 * 1 2 3 32 32 H 1.08998 * 109.47025 * 210.00539 * 1 2 3 33 33 H 1.09004 * 109.46780 * 329.99495 * 1 2 3 34 34 H 1.08010 * 119.99954 * 0.02562 * 3 2 1 35 35 H 1.07995 * 120.00497 * 180.25635 * 4 3 2 36 36 H 1.09003 * 109.46704 * 210.00101 * 6 5 4 37 37 H 1.09003 * 109.46926 * 329.99549 * 6 5 4 38 38 H 1.07993 * 125.28546 * 359.97115 * 8 7 6 39 39 H 1.07998 * 120.00121 * 202.28995 * 10 9 8 40 40 H 0.97003 * 119.99263 * 5.39997 * 12 11 10 41 41 H 0.97000 * 120.00284 * 180.02562 * 18 17 15 42 42 H 1.07991 * 120.17280 * 359.95270 * 24 23 9 43 43 H 1.07995 * 119.87766 * 180.24220 * 25 24 23 44 44 H 1.07997 * 119.67695 * 179.62331 * 26 25 24 45 45 H 1.08004 * 120.00347 * 179.97438 * 27 26 25 46 46 H 1.08006 * 119.99789 * 179.97438 * 29 5 4 47 47 H 1.08006 * 119.99913 * 179.97438 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0056 5 6 4.2717 -0.0001 0.0054 6 6 5.7787 -0.0002 0.0110 7 7 6.2620 -0.0032 1.3940 8 6 6.6048 1.0981 2.0862 9 6 7.0183 0.7321 3.3632 10 6 7.4587 1.5949 4.3948 11 7 7.1125 2.8610 4.3842 12 7 6.0492 3.2897 3.5789 13 6 5.7628 4.6032 3.4837 14 8 6.4305 5.4197 4.0991 15 6 4.7021 5.0307 2.6810 16 1 4.1113 4.3084 2.1371 17 6 4.4049 6.3955 2.5818 18 7 5.1195 7.2695 3.2403 19 14 2.9863 6.9670 1.5091 20 1 1.7406 7.0083 2.3165 21 1 3.2798 8.3238 0.9818 22 1 2.8108 6.0229 0.3763 23 6 6.9060 -0.7368 3.4234 24 6 7.1645 -1.6859 4.4099 25 6 6.9357 -3.0209 4.1493 26 6 6.4632 -3.4191 2.9083 27 6 6.2076 -2.4888 1.9212 28 6 6.4223 -1.1379 2.1674 29 6 3.5805 -1.1972 0.0002 30 6 2.1982 -1.1972 -0.0044 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6583 2.1325 0.0004 35 1 4.1205 2.1323 0.0098 36 1 6.1439 -0.8890 -0.5036 37 1 6.1439 0.8910 -0.4995 38 1 6.5659 2.1093 1.7090 39 1 8.0796 1.2117 5.1910 40 1 5.5190 2.6410 3.0899 41 1 4.9134 8.2149 3.1719 42 1 7.5314 -1.3770 5.3774 43 1 7.1311 -3.7593 4.9127 44 1 6.2931 -4.4674 2.7121 45 1 5.8400 -2.8105 0.9579 46 1 4.1205 -2.1326 -0.0004 47 1 1.6581 -2.1325 -0.0089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013286046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:14 Heat of formation + Delta-G solvation = 94.923422 kcal Electronic energy + Delta-G solvation = -31440.859755 eV Core-core repulsion = 27362.067370 eV Total energy + Delta-G solvation = -4078.792385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.44059 -39.47948 -37.70955 -37.01419 -35.58839 -33.99264 -32.65479 -31.94601 -31.10234 -30.37331 -30.20563 -28.79005 -27.70022 -26.57156 -24.96124 -23.09023 -22.80853 -22.35926 -21.55409 -20.85254 -20.13920 -18.89488 -17.63616 -17.12932 -16.45257 -16.31721 -15.65932 -15.56231 -15.45852 -15.38834 -15.06051 -14.39924 -14.09685 -14.00122 -13.84947 -13.77380 -13.50128 -13.42170 -13.05942 -12.89836 -12.72252 -12.62406 -12.34395 -12.13755 -12.04446 -11.73264 -11.64478 -11.38540 -11.33916 -11.11627 -11.09220 -10.94261 -10.78756 -10.60114 -10.38071 -9.49092 -9.39479 -9.04429 -8.95527 -8.77236 -8.18140 -7.95439 -7.66793 -6.74758 -6.36612 -4.93755 1.01176 1.10558 1.28602 1.62460 2.12758 2.82017 3.01999 3.08065 3.11682 3.37095 3.66368 3.90219 4.01864 4.33887 4.40958 4.47606 4.49877 4.64737 4.74147 4.80330 4.83466 4.89923 5.02096 5.08917 5.15094 5.20259 5.33945 5.39603 5.44546 5.48158 5.57608 5.62160 5.67634 5.73589 5.84493 5.88439 5.91735 5.93565 6.04676 6.24505 6.33716 6.40074 6.45908 6.47018 6.61258 6.79946 6.84297 6.85372 6.98716 7.20692 7.25712 7.31645 7.91350 8.04758 8.77426 8.86795 9.41180 10.41567 10.74154 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.007119 B = 0.004165 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3932.019442 B = 6721.492533 C = 9982.537607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C -0.117 4.117 4 C -0.089 4.089 5 C -0.123 4.123 6 C 0.148 3.852 7 N -0.458 5.458 8 C 0.067 3.933 9 C -0.170 4.170 10 C 0.064 3.936 11 N -0.206 5.206 12 N -0.596 5.596 13 C 0.557 3.443 14 O -0.557 6.557 15 C -0.537 4.537 16 H 0.066 0.934 17 C 0.090 3.910 18 N -0.742 5.742 19 Si 0.911 3.089 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.079 4.079 24 C -0.071 4.071 25 C -0.147 4.147 26 C -0.109 4.109 27 C -0.125 4.125 28 C 0.092 3.908 29 C -0.095 4.095 30 C -0.125 4.125 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.178 0.822 39 H 0.161 0.839 40 H 0.368 0.632 41 H 0.273 0.727 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.113 0.887 46 H 0.119 0.881 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 -21.312 -9.358 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.078 4.078 3 C -0.135 4.135 4 C -0.108 4.108 5 C -0.124 4.124 6 C 0.027 3.973 7 N -0.138 5.138 8 C -0.067 4.067 9 C -0.180 4.180 10 C -0.144 4.144 11 N -0.015 5.015 12 N -0.345 5.345 13 C 0.365 3.635 14 O -0.437 6.437 15 C -0.574 4.574 16 H 0.085 0.915 17 C -0.134 4.134 18 N -0.369 5.369 19 Si 0.735 3.265 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.084 4.084 24 C -0.089 4.089 25 C -0.166 4.166 26 C -0.128 4.128 27 C -0.145 4.145 28 C -0.013 4.013 29 C -0.113 4.113 30 C -0.143 4.143 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.195 0.805 39 H 0.178 0.822 40 H 0.207 0.793 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.131 0.869 46 H 0.137 0.863 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.045 -19.435 -8.831 21.727 hybrid contribution -1.228 -0.784 -1.283 1.941 sum -5.273 -20.220 -10.113 23.215 Atomic orbital electron populations 1.20822 0.91168 1.03026 1.02299 1.20000 0.96191 0.93205 0.98401 1.21113 0.94173 0.97863 1.00392 1.21173 0.94545 0.97680 0.97402 1.19963 0.94733 0.93933 1.03784 1.20713 0.90755 1.05056 0.80808 1.43460 1.53955 1.04805 1.11590 1.22863 1.00331 0.91558 0.91954 1.19206 1.12351 0.91728 0.94690 1.23016 1.03906 0.88952 0.98525 1.75452 1.01000 1.13371 1.11697 1.48240 1.26464 1.10103 1.49649 1.16499 0.85769 0.77896 0.83287 1.90760 1.53485 1.50720 1.48762 1.19495 1.15478 0.93012 1.29400 0.91541 1.25711 0.96526 0.96362 0.94764 1.70067 1.33260 1.02397 1.31206 0.86314 0.81249 0.78594 0.80352 1.19410 1.20139 1.18708 1.19072 1.03072 0.92803 0.93487 1.20525 0.98670 0.91746 0.97974 1.20859 1.03052 0.95469 0.97247 1.20733 1.00367 0.98448 0.93235 1.19993 1.05250 0.89370 0.99929 1.18245 1.03538 0.88060 0.91452 1.20973 0.94281 0.97110 0.98980 1.20971 0.93993 0.97535 1.01818 0.91124 0.91539 0.91242 0.85565 0.85329 0.88716 0.87995 0.80461 0.82236 0.79311 0.91575 0.85831 0.86189 0.86164 0.86876 0.86267 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.08 -0.84 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.42 9.70 -39.59 -0.38 -1.81 16 4 C -0.09 -1.12 9.70 -39.58 -0.38 -1.51 16 5 C -0.12 -1.40 5.46 -104.62 -0.57 -1.97 16 6 C 0.15 1.54 6.05 -5.19 -0.03 1.51 16 7 N -0.46 -6.14 2.70 -114.89 -0.31 -6.45 16 8 C 0.07 1.07 9.16 -16.04 -0.15 0.92 16 9 C -0.17 -2.87 5.75 -104.57 -0.60 -3.47 16 10 C 0.06 1.17 11.32 -16.55 -0.19 0.98 16 11 N -0.21 -4.83 11.18 31.04 0.35 -4.48 16 12 N -0.60 -14.57 5.10 28.73 0.15 -14.42 16 13 C 0.56 16.29 7.62 -15.71 -0.12 16.17 16 14 O -0.56 -18.82 15.17 4.82 0.07 -18.75 16 15 C -0.54 -14.73 9.20 -38.35 -0.35 -15.08 16 16 H 0.07 1.63 7.85 -52.48 -0.41 1.22 16 17 C 0.09 2.42 5.49 -17.36 -0.10 2.33 16 18 N -0.74 -21.72 11.68 55.55 0.65 -21.07 16 19 Si 0.91 19.09 29.56 -169.99 -5.02 14.06 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 23 C -0.08 -1.18 6.34 -104.92 -0.67 -1.84 16 24 C -0.07 -0.90 10.10 -39.29 -0.40 -1.30 16 25 C -0.15 -1.60 10.04 -39.55 -0.40 -1.99 16 26 C -0.11 -1.12 10.02 -39.51 -0.40 -1.52 16 27 C -0.12 -1.41 9.95 -39.38 -0.39 -1.80 16 28 C 0.09 1.26 6.78 -83.86 -0.57 0.69 16 29 C -0.09 -0.98 9.70 -39.59 -0.38 -1.37 16 30 C -0.13 -1.28 9.70 -39.58 -0.38 -1.66 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.10 0.95 8.05 -51.93 -0.42 0.54 16 38 H 0.18 3.01 6.61 -52.49 -0.35 2.66 16 39 H 0.16 2.42 8.06 -52.49 -0.42 2.00 16 40 H 0.37 7.98 5.56 -182.59 -1.02 6.97 16 41 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.11 1.02 6.86 -52.48 -0.36 0.66 16 46 H 0.12 1.02 6.86 -52.48 -0.36 0.66 16 47 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -36.56 403.59 -11.44 -48.00 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.69 Total: 11.80 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -6.71 Total: -14.78 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.83 Total: -46.41 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.07 Total: -18.75 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.56 -11.44 -48.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013286046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.921 kcal (2) G-P(sol) polarization free energy of solvation -36.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds