Wall clock time and date at job start Tue Mar 31 2020 05:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38231 * 120.00402 * 2 1 4 4 C 1.38227 * 120.00538 * 179.73056 * 3 2 1 5 5 C 1.38241 * 119.99620 * 0.27805 * 4 3 2 6 6 C 1.50706 * 119.99893 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.47076 * 89.99587 * 6 5 4 8 8 C 1.34522 * 124.61910 * 265.02081 * 7 6 5 9 9 C 1.39124 * 109.42877 * 180.02562 * 8 7 6 10 10 C 1.41516 * 126.95580 * 179.97438 * 9 8 7 11 11 N 1.31260 * 120.00446 * 22.29646 * 10 9 8 12 12 N 1.40104 * 119.99988 * 16.60908 * 11 10 9 13 13 C 1.34773 * 120.00276 * 185.39279 * 12 11 10 14 14 O 1.22112 * 119.99856 * 0.02562 * 13 12 11 15 15 C 1.39720 * 120.00198 * 180.02562 * 13 12 11 16 16 H 1.08007 * 119.99717 * 0.02562 * 15 13 12 17 17 C 1.40037 * 120.00149 * 180.02562 * 15 13 12 18 18 N 1.30696 * 120.00177 * 359.97438 * 17 15 13 19 19 Si 1.86808 * 119.99974 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47189 * 89.99561 * 19 17 15 21 21 H 1.48502 * 109.46849 * 209.99811 * 19 17 15 22 22 H 1.48501 * 109.46876 * 329.99506 * 19 17 15 23 23 C 1.47438 * 106.07907 * 0.02562 * 9 8 7 24 24 C 1.39314 * 133.90949 * 180.02562 * 23 9 8 25 25 C 1.37930 * 119.65758 * 179.25520 * 24 23 9 26 26 C 1.38629 * 120.24513 * 0.62206 * 25 24 23 27 27 C 1.38030 * 120.64408 * 359.59378 * 26 25 24 28 28 C 1.38252 * 124.61461 * 84.72871 * 7 6 5 29 29 C 1.38234 * 119.99909 * 359.97438 * 5 4 3 30 30 C 1.38231 * 120.00134 * 359.97438 * 29 5 4 31 31 H 1.08994 * 109.47571 * 89.99241 * 1 2 3 32 32 H 1.08998 * 109.47025 * 210.00539 * 1 2 3 33 33 H 1.09004 * 109.46780 * 329.99495 * 1 2 3 34 34 H 1.08010 * 119.99954 * 0.02562 * 3 2 1 35 35 H 1.07995 * 120.00497 * 180.25635 * 4 3 2 36 36 H 1.09003 * 109.46704 * 210.00101 * 6 5 4 37 37 H 1.09003 * 109.46926 * 329.99549 * 6 5 4 38 38 H 1.07993 * 125.28546 * 359.97115 * 8 7 6 39 39 H 1.07998 * 120.00121 * 202.28995 * 10 9 8 40 40 H 0.97003 * 119.99263 * 5.39997 * 12 11 10 41 41 H 0.97000 * 120.00284 * 180.02562 * 18 17 15 42 42 H 1.07991 * 120.17280 * 359.95270 * 24 23 9 43 43 H 1.07995 * 119.87766 * 180.24220 * 25 24 23 44 44 H 1.07997 * 119.67695 * 179.62331 * 26 25 24 45 45 H 1.08004 * 120.00347 * 179.97438 * 27 26 25 46 46 H 1.08006 * 119.99789 * 179.97438 * 29 5 4 47 47 H 1.08006 * 119.99913 * 179.97438 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0056 5 6 4.2717 -0.0001 0.0054 6 6 5.7787 -0.0002 0.0110 7 7 6.2620 -0.0032 1.3940 8 6 6.6048 1.0981 2.0862 9 6 7.0183 0.7321 3.3632 10 6 7.4587 1.5949 4.3948 11 7 7.1125 2.8610 4.3842 12 7 6.0492 3.2897 3.5789 13 6 5.7628 4.6032 3.4837 14 8 6.4305 5.4197 4.0991 15 6 4.7021 5.0307 2.6810 16 1 4.1113 4.3084 2.1371 17 6 4.4049 6.3955 2.5818 18 7 5.1195 7.2695 3.2403 19 14 2.9863 6.9670 1.5091 20 1 1.7406 7.0083 2.3165 21 1 3.2798 8.3238 0.9818 22 1 2.8108 6.0229 0.3763 23 6 6.9060 -0.7368 3.4234 24 6 7.1645 -1.6859 4.4099 25 6 6.9357 -3.0209 4.1493 26 6 6.4632 -3.4191 2.9083 27 6 6.2076 -2.4888 1.9212 28 6 6.4223 -1.1379 2.1674 29 6 3.5805 -1.1972 0.0002 30 6 2.1982 -1.1972 -0.0044 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6583 2.1325 0.0004 35 1 4.1205 2.1323 0.0098 36 1 6.1439 -0.8890 -0.5036 37 1 6.1439 0.8910 -0.4995 38 1 6.5659 2.1093 1.7090 39 1 8.0796 1.2117 5.1910 40 1 5.5190 2.6410 3.0899 41 1 4.9134 8.2149 3.1719 42 1 7.5314 -1.3770 5.3774 43 1 7.1311 -3.7593 4.9127 44 1 6.2931 -4.4674 2.7121 45 1 5.8400 -2.8105 0.9579 46 1 4.1205 -2.1326 -0.0004 47 1 1.6581 -2.1325 -0.0089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013286046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:13 Heat of formation + Delta-G solvation = 74.138635 kcal Electronic energy + Delta-G solvation = -31441.761051 eV Core-core repulsion = 27362.067370 eV Total energy + Delta-G solvation = -4079.693681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.51027 -40.31890 -39.59607 -38.04976 -37.25269 -35.05678 -34.64579 -33.24446 -32.05018 -31.85178 -31.10540 -29.79137 -29.06252 -28.25097 -25.92473 -24.29214 -23.71497 -23.51854 -22.59269 -22.13574 -21.40187 -20.38829 -19.40439 -18.30643 -17.76657 -17.40223 -17.25416 -16.65421 -16.45603 -16.35395 -16.13099 -15.87489 -15.39338 -15.06731 -14.91405 -14.80362 -14.65793 -14.56844 -14.50601 -14.31126 -13.88513 -13.51515 -13.49297 -13.22517 -13.07987 -12.86743 -12.85996 -12.72817 -12.66083 -12.57878 -12.43169 -12.06051 -11.96410 -11.91346 -11.80545 -11.08184 -10.92489 -10.61053 -9.93794 -9.89316 -9.59153 -9.42955 -9.17285 -8.41350 -8.21713 -7.09244 -0.03220 0.21039 0.43781 0.62695 0.90971 1.34881 1.37551 1.53227 1.81039 1.96927 2.17391 2.41879 2.65377 2.80795 3.04321 3.56223 3.65603 3.68214 3.71955 3.73864 3.96429 4.00201 4.03309 4.10033 4.22170 4.33218 4.39712 4.44855 4.51904 4.52833 4.64406 4.67259 4.80011 4.80599 4.86646 4.89568 4.97954 5.10344 5.12750 5.15809 5.22724 5.40206 5.42245 5.52939 5.60401 5.65008 5.70040 5.76587 5.82326 5.85384 6.03814 6.09044 6.16491 6.31682 6.67439 7.06025 7.51898 8.42886 8.64280 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.007119 B = 0.004165 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3932.019442 B = 6721.492533 C = 9982.537607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.113 4.113 5 C -0.130 4.130 6 C 0.142 3.858 7 N -0.448 5.448 8 C 0.074 3.926 9 C -0.213 4.213 10 C 0.114 3.886 11 N -0.287 5.287 12 N -0.596 5.596 13 C 0.543 3.457 14 O -0.621 6.621 15 C -0.558 4.558 16 H 0.087 0.913 17 C 0.034 3.966 18 N -0.798 5.798 19 Si 1.001 2.999 20 H -0.259 1.259 21 H -0.268 1.268 22 H -0.242 1.242 23 C -0.098 4.098 24 C -0.091 4.091 25 C -0.138 4.138 26 C -0.102 4.102 27 C -0.124 4.124 28 C 0.077 3.923 29 C -0.094 4.094 30 C -0.128 4.128 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.160 0.840 39 H 0.190 0.810 40 H 0.377 0.623 41 H 0.281 0.719 42 H 0.132 0.868 43 H 0.149 0.851 44 H 0.157 0.843 45 H 0.142 0.858 46 H 0.145 0.855 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 -26.078 -11.256 29.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.157 4.157 4 C -0.131 4.131 5 C -0.131 4.131 6 C 0.023 3.977 7 N -0.127 5.127 8 C -0.063 4.063 9 C -0.223 4.223 10 C -0.093 4.093 11 N -0.094 5.094 12 N -0.344 5.344 13 C 0.353 3.647 14 O -0.507 6.507 15 C -0.594 4.594 16 H 0.105 0.895 17 C -0.185 4.185 18 N -0.426 5.426 19 Si 0.819 3.181 20 H -0.184 1.184 21 H -0.193 1.193 22 H -0.165 1.165 23 C -0.103 4.103 24 C -0.110 4.110 25 C -0.157 4.157 26 C -0.121 4.121 27 C -0.144 4.144 28 C -0.027 4.027 29 C -0.113 4.113 30 C -0.146 4.146 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.131 0.869 36 H 0.144 0.856 37 H 0.123 0.877 38 H 0.177 0.823 39 H 0.207 0.793 40 H 0.217 0.783 41 H 0.091 0.909 42 H 0.150 0.850 43 H 0.167 0.833 44 H 0.175 0.825 45 H 0.160 0.840 46 H 0.163 0.837 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.865 -24.302 -10.750 27.213 hybrid contribution -0.572 0.279 -0.703 0.949 sum -6.438 -24.023 -11.453 27.381 Atomic orbital electron populations 1.20868 0.89515 1.03521 1.03305 1.20320 0.97557 0.92963 0.97593 1.21255 0.94199 0.98712 1.01552 1.21231 0.95068 0.97917 0.98912 1.20018 0.94956 0.93971 1.04141 1.20994 0.90542 1.06805 0.79405 1.43619 1.52650 1.04065 1.12384 1.22677 0.99471 0.91709 0.92393 1.19242 1.15125 0.93208 0.94766 1.23660 1.00245 0.87632 0.97720 1.75474 1.03290 1.15902 1.14778 1.47503 1.27757 1.08797 1.50328 1.16928 0.85823 0.78939 0.83024 1.90687 1.55685 1.52892 1.51458 1.19984 1.15517 0.94397 1.29533 0.89467 1.27058 0.99664 0.95915 0.95883 1.70238 1.35869 1.03193 1.33302 0.84981 0.76366 0.78432 0.78348 1.18356 1.19251 1.16499 1.19196 1.04320 0.91678 0.95088 1.20784 0.99599 0.92484 0.98110 1.21282 1.01098 0.95025 0.98308 1.21239 0.98350 1.00110 0.92399 1.20389 1.04449 0.88038 1.01557 1.18593 1.04078 0.89021 0.90999 1.21283 0.94631 0.97481 0.97869 1.21340 0.94204 0.98285 1.00766 0.89786 0.90149 0.91653 0.85837 0.86857 0.85616 0.87716 0.82323 0.79319 0.78282 0.90919 0.85022 0.83329 0.82515 0.84017 0.83748 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 10.01 71.24 0.71 -0.96 16 2 C -0.08 -1.67 5.88 -19.87 -0.12 -1.79 16 3 C -0.14 -3.35 9.70 22.27 0.22 -3.14 16 4 C -0.11 -2.86 9.70 22.27 0.22 -2.64 16 5 C -0.13 -2.76 5.46 -19.86 -0.11 -2.87 16 6 C 0.14 2.75 6.05 85.63 0.52 3.27 16 7 N -0.45 -11.59 2.70 -517.39 -1.40 -12.99 16 8 C 0.07 2.46 9.16 84.49 0.77 3.24 16 9 C -0.21 -7.31 5.75 -19.83 -0.11 -7.43 16 10 C 0.11 4.37 11.32 85.59 0.97 5.34 16 11 N -0.29 -14.35 11.18 -55.70 -0.62 -14.97 16 12 N -0.60 -31.33 5.10 -181.05 -0.92 -32.25 16 13 C 0.54 34.09 7.62 84.60 0.64 34.74 16 14 O -0.62 -45.24 15.17 -5.68 -0.09 -45.33 16 15 C -0.56 -32.19 9.20 23.06 0.21 -31.98 16 16 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 17 C 0.03 1.87 5.49 85.30 0.47 2.34 16 18 N -0.80 -49.22 11.68 21.84 0.26 -48.97 16 19 Si 1.00 39.87 29.56 68.60 2.03 41.90 16 20 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 21 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 22 H -0.24 -8.72 7.11 99.48 0.71 -8.01 16 23 C -0.10 -2.80 6.34 -20.06 -0.13 -2.93 16 24 C -0.09 -2.12 10.10 22.46 0.23 -1.89 16 25 C -0.14 -2.41 10.04 22.29 0.22 -2.19 16 26 C -0.10 -1.57 10.02 22.31 0.22 -1.34 16 27 C -0.12 -2.24 9.95 22.40 0.22 -2.02 16 28 C 0.08 1.94 6.78 38.85 0.26 2.20 16 29 C -0.09 -1.65 9.70 22.27 0.22 -1.44 16 30 C -0.13 -2.21 9.70 22.27 0.22 -1.99 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 33 H 0.06 1.00 8.09 -2.39 -0.02 0.98 16 34 H 0.12 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.11 3.09 8.06 -2.91 -0.02 3.06 16 36 H 0.13 1.64 8.09 -2.39 -0.02 1.63 16 37 H 0.10 1.94 8.05 -2.39 -0.02 1.92 16 38 H 0.16 5.86 6.61 -2.91 -0.02 5.84 16 39 H 0.19 5.77 8.06 -2.91 -0.02 5.74 16 40 H 0.38 17.56 5.56 -213.31 -1.19 16.37 16 41 H 0.28 15.45 8.29 -92.71 -0.77 14.68 16 42 H 0.13 2.70 8.06 -2.92 -0.02 2.68 16 43 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 44 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 45 H 0.14 1.71 6.86 -2.91 -0.02 1.69 16 46 H 0.14 1.73 6.86 -2.91 -0.02 1.71 16 47 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -87.52 403.59 4.93 -82.59 By element: Atomic # 1 Polarization: 43.69 SS G_CDS: -0.18 Total: 43.51 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 5.86 Total: -13.49 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -2.69 Total: -109.18 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -0.09 Total: -45.33 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -87.52 4.93 -82.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013286046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.725 kcal (2) G-P(sol) polarization free energy of solvation -87.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds