Wall clock time and date at job start Tue Mar 31 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46495 * 120.00212 * 2 1 4 4 C 1.50701 * 109.47625 * 270.00720 * 3 2 1 5 5 H 1.08005 * 119.99413 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00306 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99997 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 119.99985 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.46980 * 90.00396 * 8 6 4 10 10 H 1.48501 * 109.47351 * 210.00006 * 8 6 4 11 11 H 1.48498 * 109.47397 * 330.00600 * 8 6 4 12 12 C 1.34772 * 119.99991 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99977 * 179.97438 * 12 2 1 14 14 C 1.50706 * 119.99894 * 359.97438 * 12 2 1 15 15 C 1.53004 * 109.47124 * 180.02562 * 14 12 2 16 16 N 1.46495 * 109.47026 * 179.97438 * 15 14 12 17 17 C 1.35698 * 119.86059 * 90.00240 * 16 15 14 18 18 N 1.30073 * 123.05418 * 180.30164 * 17 16 15 19 19 C 1.34234 * 121.87429 * 359.43242 * 18 17 16 20 20 C 1.40379 * 119.17475 * 0.54060 * 19 18 17 21 21 C 1.40746 * 107.26772 * 179.76020 * 20 19 18 22 22 N 1.30445 * 108.32271 * 0.02562 * 21 20 19 23 23 N 1.35834 * 134.23234 * 180.22611 * 19 18 17 24 24 C 1.46501 * 125.84632 * 0.24876 * 23 19 18 25 25 C 1.52999 * 109.46720 * 60.00544 * 24 23 19 26 26 C 1.52998 * 109.47016 * 180.02562 * 24 23 19 27 27 C 1.52995 * 109.47202 * 300.00523 * 24 23 19 28 28 C 1.35363 * 119.86916 * 270.01719 * 16 15 14 29 29 O 1.21834 * 121.24231 * 359.96274 * 28 16 15 30 30 H 1.09004 * 109.46845 * 269.99755 * 1 2 3 31 31 H 1.09001 * 109.47049 * 29.99302 * 1 2 3 32 32 H 1.09000 * 109.47360 * 149.99314 * 1 2 3 33 33 H 1.09001 * 109.47072 * 30.00193 * 3 2 1 34 34 H 1.08999 * 109.47511 * 149.99848 * 3 2 1 35 35 H 0.97006 * 120.00273 * 179.97438 * 7 6 4 36 36 H 1.08994 * 109.47415 * 59.99779 * 14 12 2 37 37 H 1.09001 * 109.46661 * 299.99906 * 14 12 2 38 38 H 1.09001 * 109.47065 * 59.99250 * 15 14 12 39 39 H 1.08999 * 109.46948 * 299.99946 * 15 14 12 40 40 H 1.08002 * 118.47014 * 0.02562 * 17 16 15 41 41 H 1.08006 * 125.83306 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.47316 * 59.99793 * 25 24 23 43 43 H 1.08999 * 109.47208 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.47585 * 299.99943 * 25 24 23 45 45 H 1.08995 * 109.47130 * 60.00174 * 26 24 23 46 46 H 1.08999 * 109.47094 * 180.02562 * 26 24 23 47 47 H 1.08999 * 109.47072 * 300.00239 * 26 24 23 48 48 H 1.08996 * 109.47335 * 59.99912 * 27 24 23 49 49 H 1.08999 * 109.47094 * 180.02562 * 27 24 23 50 50 H 1.08995 * 109.47074 * 299.99905 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.3464 3.2570 -2.9126 8 14 3.7340 3.9286 -0.2528 9 1 5.1071 3.5067 0.1236 10 1 3.7500 5.3553 -0.6645 11 1 2.8277 3.7594 0.9113 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 7 1.6471 -4.9039 0.0001 17 6 1.3089 -5.4894 -1.1764 18 7 0.6545 -6.6112 -1.2484 19 6 0.2734 -7.2813 -0.1494 20 6 0.5789 -6.7526 1.1147 21 6 0.0646 -7.6434 2.0754 22 7 -0.5076 -8.6352 1.4504 23 7 -0.3971 -8.4425 0.0675 24 6 -0.9162 -9.3397 -0.9679 25 6 0.2395 -9.8352 -1.8394 26 6 -1.6065 -10.5348 -0.3077 27 6 -1.9240 -8.5856 -1.8376 28 6 1.3101 -5.4872 1.1742 29 8 1.6051 -4.9774 2.2407 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8901 -0.5137 32 1 -0.3634 -0.8899 -0.5139 33 1 1.6085 2.0283 0.5139 34 1 3.1500 1.1384 0.5138 35 1 3.8233 4.0830 -3.0898 36 1 0.7583 -2.5299 -0.8902 37 1 0.7591 -2.5302 0.8897 38 1 3.0063 -3.5775 0.8894 39 1 3.0062 -3.5775 -0.8905 40 1 1.5925 -4.9988 -2.0959 41 1 0.1329 -7.5262 3.1469 42 1 0.9576 -10.3724 -1.2198 43 1 -0.1466 -10.5031 -2.6095 44 1 0.7311 -8.9836 -2.3098 45 1 -2.4298 -10.1815 0.3130 46 1 -1.9923 -11.2026 -1.0779 47 1 -0.8888 -11.0721 0.3122 48 1 -1.4326 -7.7340 -2.3079 49 1 -2.3106 -9.2533 -2.6076 50 1 -2.7473 -8.2326 -1.2167 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013516609.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:28 Heat of formation + Delta-G solvation = 16.152925 kcal Electronic energy + Delta-G solvation = -32395.331138 eV Core-core repulsion = 28038.106839 eV Total energy + Delta-G solvation = -4357.224299 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.23494 -41.40188 -40.55742 -38.60490 -37.72086 -36.72625 -35.96086 -34.68399 -32.61627 -31.50249 -30.94288 -30.19756 -28.36596 -28.35412 -27.42650 -26.31316 -25.71257 -24.37786 -23.50002 -22.90206 -20.96295 -20.04102 -19.33858 -19.11945 -18.91147 -18.39200 -17.49530 -17.28544 -16.98312 -16.72896 -16.47317 -16.17730 -15.86205 -15.84278 -15.44163 -15.12575 -14.83065 -14.72378 -14.68690 -14.62663 -14.20368 -14.02526 -13.67067 -13.64370 -13.40039 -13.33742 -13.22612 -13.13766 -13.09592 -12.78769 -12.71293 -12.43446 -12.42242 -12.29840 -12.24220 -12.01094 -11.93935 -11.72088 -11.44510 -11.31504 -11.06838 -10.80935 -10.70384 -10.10563 -9.45904 -9.40108 -8.31884 -6.35995 -0.32754 0.58668 0.95809 1.31067 1.35013 1.38174 1.38974 1.46030 1.77482 2.31746 2.32970 2.50475 2.88505 3.02694 3.12590 3.42182 3.57500 3.68514 3.75543 3.76930 3.88679 3.90256 3.98993 4.13152 4.28932 4.30630 4.50046 4.57574 4.58994 4.63019 4.67601 4.70797 4.73838 4.82177 4.82687 4.84802 4.85007 4.97535 4.97877 5.06225 5.10833 5.19979 5.24175 5.36051 5.45934 5.47259 5.60280 5.80261 6.25018 6.32182 6.64751 6.66271 6.67779 6.74422 7.23351 7.39006 8.84340 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.001927 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.910338 B =14529.869746 C =15028.113333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.607 5.607 3 C 0.221 3.779 4 C -0.531 4.531 5 H 0.036 0.964 6 C 0.012 3.988 7 N -0.942 5.942 8 Si 0.942 3.058 9 H -0.277 1.277 10 H -0.277 1.277 11 H -0.242 1.242 12 C 0.505 3.495 13 O -0.589 6.589 14 C -0.138 4.138 15 C 0.118 3.882 16 N -0.536 5.536 17 C 0.427 3.573 18 N -0.538 5.538 19 C 0.339 3.661 20 C -0.374 4.374 21 C 0.117 3.883 22 N -0.284 5.284 23 N -0.344 5.344 24 C 0.172 3.828 25 C -0.156 4.156 26 C -0.138 4.138 27 C -0.156 4.156 28 C 0.568 3.432 29 O -0.554 6.554 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.019 0.981 35 H 0.268 0.732 36 H 0.131 0.869 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.129 0.871 40 H 0.261 0.739 41 H 0.209 0.791 42 H 0.050 0.950 43 H 0.106 0.894 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.102 0.898 47 H 0.057 0.943 48 H 0.069 0.931 49 H 0.106 0.894 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.032 -27.504 1.991 30.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.338 5.338 3 C 0.098 3.902 4 C -0.569 4.569 5 H 0.055 0.945 6 C -0.186 4.186 7 N -0.582 5.582 8 Si 0.766 3.234 9 H -0.203 1.203 10 H -0.202 1.202 11 H -0.165 1.165 12 C 0.293 3.707 13 O -0.470 6.470 14 C -0.178 4.178 15 C -0.004 4.004 16 N -0.256 5.256 17 C 0.139 3.861 18 N -0.263 5.263 19 C 0.100 3.900 20 C -0.390 4.390 21 C -0.073 4.073 22 N -0.102 5.102 23 N -0.128 5.128 24 C 0.091 3.909 25 C -0.214 4.214 26 C -0.195 4.195 27 C -0.214 4.214 28 C 0.364 3.636 29 O -0.432 6.432 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.149 0.851 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.147 0.853 40 H 0.276 0.724 41 H 0.226 0.774 42 H 0.069 0.931 43 H 0.125 0.875 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.120 0.880 47 H 0.076 0.924 48 H 0.088 0.912 49 H 0.124 0.876 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.193 -28.775 2.007 31.719 hybrid contribution 1.223 2.049 1.141 2.645 sum -11.969 -26.726 3.148 29.452 Atomic orbital electron populations 1.21974 0.77654 1.04301 1.02652 1.47940 1.08431 1.06053 1.71351 1.19358 0.92720 0.82490 0.95585 1.21521 1.36469 1.06659 0.92294 0.94519 1.25779 0.95494 0.98986 0.98325 1.70030 1.42739 1.24462 1.21004 0.85791 0.79567 0.77933 0.80130 1.20254 1.20201 1.16499 1.20914 0.87685 0.86186 0.75902 1.90668 1.16054 1.88054 1.52223 1.21904 0.99273 0.89922 1.06713 1.21651 0.93324 0.78423 1.06986 1.46776 1.49014 1.22507 1.07296 1.25878 0.83494 0.86200 0.90512 1.67383 1.21628 1.09553 1.27743 1.19237 0.92099 0.88539 0.90082 1.21220 1.19992 1.02216 0.95556 1.23815 0.93160 0.89269 1.01056 1.77202 1.24163 1.22916 0.85945 1.49202 1.42863 1.15731 1.05039 1.21243 0.95384 0.89329 0.84943 1.22239 0.96816 1.02546 0.99770 1.21903 1.00447 0.95576 1.01576 1.22238 0.97592 1.01757 0.99775 1.17721 0.78620 0.83937 0.83337 1.90877 1.56239 1.66561 1.29502 0.91032 0.91325 0.88821 0.93559 0.96279 0.92331 0.85075 0.87953 0.89833 0.85301 0.72369 0.77408 0.93125 0.87529 0.91298 0.92312 0.87958 0.92372 0.91246 0.87566 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.00 10.24 127.77 1.31 3.31 16 2 N -0.61 -22.98 2.86 -851.13 -2.43 -25.41 16 3 C 0.22 10.39 4.23 85.63 0.36 10.75 16 4 C -0.53 -29.94 9.94 25.60 0.25 -29.69 16 5 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 6 C 0.01 0.71 5.47 84.65 0.46 1.18 16 7 N -0.94 -57.90 13.96 21.45 0.30 -57.60 16 8 Si 0.94 43.68 27.47 68.60 1.88 45.57 16 9 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 12 C 0.50 18.25 7.67 87.66 0.67 18.93 16 13 O -0.59 -26.75 15.56 -3.03 -0.05 -26.79 16 14 C -0.14 -3.14 4.58 29.85 0.14 -3.01 16 15 C 0.12 2.56 4.67 86.38 0.40 2.96 16 16 N -0.54 -10.36 2.60 -648.55 -1.69 -12.05 16 17 C 0.43 5.60 11.42 180.18 2.06 7.66 16 18 N -0.54 -9.07 9.20 -196.49 -1.81 -10.88 16 19 C 0.34 7.26 7.10 133.86 0.95 8.21 16 20 C -0.37 -9.23 6.39 -20.06 -0.13 -9.36 16 21 C 0.12 2.65 12.05 85.51 1.03 3.68 16 22 N -0.28 -6.36 11.53 -56.64 -0.65 -7.01 16 23 N -0.34 -6.90 3.48 -305.09 -1.06 -7.96 16 24 C 0.17 2.32 1.21 3.60 0.00 2.33 16 25 C -0.16 -1.73 8.52 71.98 0.61 -1.12 16 26 C -0.14 -1.52 7.97 71.98 0.57 -0.95 16 27 C -0.16 -1.72 8.52 71.98 0.61 -1.11 16 28 C 0.57 15.01 7.66 86.24 0.66 15.67 16 29 O -0.55 -18.57 16.86 -4.78 -0.08 -18.65 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.94 8.07 -2.39 -0.02 1.92 16 32 H 0.09 1.81 6.44 -2.39 -0.02 1.79 16 33 H 0.05 2.03 7.13 -2.39 -0.02 2.01 16 34 H 0.02 0.97 6.85 -2.39 -0.02 0.96 16 35 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 36 H 0.13 2.09 7.40 -2.39 -0.02 2.07 16 37 H 0.10 2.28 8.11 -2.39 -0.02 2.26 16 38 H 0.08 2.34 7.43 -2.39 -0.02 2.32 16 39 H 0.13 2.29 7.96 -2.39 -0.02 2.27 16 40 H 0.26 0.76 8.00 -2.91 -0.02 0.74 16 41 H 0.21 3.77 8.06 -2.91 -0.02 3.75 16 42 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.07 0.91 7.39 -2.39 -0.02 0.89 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.07 0.91 7.38 -2.39 -0.02 0.89 16 49 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -85.26 413.61 5.28 -79.98 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.89 Total: 11.36 kcal Atomic # 6 Polarization: 19.47 SS G_CDS: 9.98 Total: 29.45 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -7.34 Total: -120.90 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -0.13 Total: -45.45 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.57 kcal Total: -85.26 5.28 -79.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013516609.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.129 kcal (2) G-P(sol) polarization free energy of solvation -85.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds