Wall clock time and date at job start Tue Mar 31 2020 05:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38287 * 119.93332 * 2 1 4 4 C 1.38092 * 120.08222 * 180.29286 * 3 2 1 5 5 C 1.38922 * 119.95596 * 359.72839 * 4 3 2 6 6 N 1.39841 * 120.06911 * 179.97438 * 5 4 3 7 7 C 1.36639 * 120.00027 * 327.03304 * 6 5 4 8 8 N 1.36539 * 119.99868 * 359.83396 * 7 6 5 9 9 N 1.32392 * 120.00075 * 179.83345 * 7 6 5 10 10 C 1.33893 * 120.00123 * 17.95154 * 9 7 6 11 11 N 1.32704 * 118.81708 * 7.07272 * 10 9 7 12 12 C 1.31936 * 122.29749 * 179.97438 * 11 10 9 13 13 C 1.50696 * 120.18570 * 179.97438 * 12 11 10 14 14 C 1.40850 * 119.63320 * 0.02562 * 12 11 10 15 15 C 1.40502 * 121.07131 * 179.97438 * 14 12 11 16 16 H 1.07998 * 120.00079 * 40.48199 * 15 14 12 17 17 C 1.39877 * 119.99901 * 220.48076 * 15 14 12 18 18 N 1.30994 * 119.99997 * 9.16069 * 17 15 14 19 19 Si 1.86801 * 120.00028 * 189.16536 * 17 15 14 20 20 H 1.48499 * 109.47541 * 89.99788 * 19 17 15 21 21 H 1.48503 * 109.47085 * 209.99975 * 19 17 15 22 22 H 1.48500 * 109.47020 * 329.99731 * 19 17 15 23 23 C 1.47413 * 117.85575 * 0.02562 * 14 12 11 24 24 O 1.21762 * 121.06504 * 180.02562 * 23 14 12 25 25 N 1.35162 * 117.87733 * 359.72704 * 23 14 12 26 26 H 0.96997 * 120.02067 * 180.25052 * 25 23 14 27 27 C 1.38853 * 119.86830 * 359.97438 * 5 4 3 28 28 C 1.38251 * 119.91111 * 0.02562 * 27 5 4 29 29 Cl 1.73605 * 119.97398 * 179.97438 * 28 27 5 30 30 H 1.08999 * 109.47184 * 270.25721 * 1 2 3 31 31 H 1.09001 * 109.46579 * 30.25711 * 1 2 3 32 32 H 1.09004 * 109.46774 * 150.25421 * 1 2 3 33 33 H 1.08002 * 119.96012 * 0.02562 * 3 2 1 34 34 H 1.08004 * 120.02064 * 179.69990 * 4 3 2 35 35 H 0.97002 * 120.00384 * 147.03029 * 6 5 4 36 36 H 0.97002 * 119.99849 * 347.49164 * 8 7 6 37 37 H 0.97002 * 120.00253 * 167.49439 * 8 7 6 38 38 H 1.09002 * 109.46717 * 0.02562 * 13 12 11 39 39 H 1.08997 * 109.47499 * 119.99921 * 13 12 11 40 40 H 1.09001 * 109.47348 * 240.00138 * 13 12 11 41 41 H 0.96993 * 119.99632 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.04960 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1984 0.0000 4 6 3.5780 1.2020 -0.0061 5 6 4.2748 0.0002 -0.0066 6 7 5.6732 0.0011 -0.0133 7 6 6.3527 0.9927 -0.6629 8 7 5.6663 1.9809 -1.3083 9 7 7.6766 0.9954 -0.6664 10 6 8.3492 -0.1220 -0.3635 11 7 7.6725 -1.2522 -0.2026 12 6 8.2653 -2.3924 0.0960 13 6 7.4499 -3.6479 0.2685 14 6 9.6644 -2.4295 0.2536 15 6 10.3268 -3.6270 0.5720 16 1 10.0217 -4.5529 0.1072 17 6 11.3812 -3.6200 1.4910 18 7 11.6358 -2.5403 2.1876 19 14 12.4266 -5.1504 1.7249 20 1 13.5748 -5.1143 0.7839 21 1 12.9317 -5.1963 3.1206 22 1 11.6042 -6.3574 1.4562 23 6 10.4113 -1.1713 0.0749 24 8 11.6223 -1.1366 0.1972 25 7 9.7097 -0.0584 -0.2350 26 1 10.1702 0.7857 -0.3632 27 6 3.5800 -1.2020 -0.0003 28 6 2.1975 -1.1992 0.0058 29 17 1.3272 -2.7013 0.0129 30 1 -0.3633 0.0046 1.0276 31 1 -0.3632 0.8877 -0.5178 32 1 -0.3633 -0.8923 -0.5099 33 1 1.6554 2.1327 0.0004 34 1 4.1159 2.1385 -0.0110 35 1 6.1610 -0.7023 0.4432 36 1 4.7133 1.8877 -1.4634 37 1 6.1315 2.7761 -1.6117 38 1 6.3957 -3.4212 0.1091 39 1 7.7742 -4.3944 -0.4564 40 1 7.5898 -4.0363 1.2773 41 1 12.3668 -2.5356 2.8251 42 1 4.1188 -2.1380 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013634109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:23 Heat of formation + Delta-G solvation = 82.064876 kcal Electronic energy + Delta-G solvation = -29465.795379 eV Core-core repulsion = 25280.472212 eV Total energy + Delta-G solvation = -4185.323167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.105 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.58877 -39.53610 -38.15666 -36.60677 -35.93714 -34.60487 -33.93130 -32.92078 -32.48594 -30.98538 -30.80382 -29.42161 -27.66614 -26.37370 -24.69887 -23.22551 -22.73289 -21.65793 -20.93614 -20.29894 -18.38835 -18.04657 -17.58846 -16.68755 -16.18719 -15.98118 -15.75128 -15.22659 -15.02055 -14.77678 -14.58954 -14.37939 -14.30176 -13.83449 -13.49790 -13.39053 -13.01696 -12.63366 -12.59684 -12.33645 -12.14795 -11.89201 -11.83537 -11.62591 -11.47336 -11.35874 -11.24200 -11.19374 -10.98850 -10.75550 -10.40707 -9.98498 -9.42054 -9.36729 -9.04700 -9.01885 -8.65575 -8.49559 -8.44394 -7.83606 -6.90768 -6.46887 -4.11427 0.87930 1.02033 1.86139 1.97697 2.90204 3.09501 3.11196 3.13360 3.19686 3.51334 3.67060 3.94845 4.08287 4.28069 4.53734 4.67770 4.75137 4.83630 5.03889 5.20455 5.37645 5.42794 5.46198 5.57624 5.65051 5.74062 5.81594 5.93421 6.09931 6.19027 6.19774 6.38311 6.53195 6.70800 6.76429 6.77954 7.07510 7.25127 7.27498 7.43167 7.56092 7.83606 7.95222 8.13171 8.32853 8.59996 8.70685 8.99988 9.53940 9.61724 10.19730 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.002735 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.358047 B =10236.865674 C =11969.167519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.114 4.114 3 C -0.075 4.075 4 C -0.186 4.186 5 C 0.176 3.824 6 N -0.653 5.653 7 C 0.652 3.348 8 N -0.847 5.847 9 N -0.613 5.613 10 C 0.444 3.556 11 N -0.547 5.547 12 C -0.059 4.059 13 C -0.048 4.048 14 C -0.010 4.010 15 C -0.404 4.404 16 H 0.089 0.911 17 C 0.068 3.932 18 N -0.749 5.749 19 Si 0.917 3.083 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.261 1.261 23 C 0.525 3.475 24 O -0.525 6.525 25 N -0.626 5.626 26 H 0.394 0.606 27 C -0.138 4.138 28 C -0.002 4.002 29 Cl -0.067 7.067 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.134 0.866 34 H 0.146 0.854 35 H 0.441 0.559 36 H 0.410 0.590 37 H 0.413 0.587 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.054 0.946 41 H 0.283 0.717 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.714 6.884 -3.282 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.116 4.116 3 C -0.094 4.094 4 C -0.208 4.208 5 C 0.075 3.925 6 N -0.304 5.304 7 C 0.291 3.709 8 N -0.406 5.406 9 N -0.357 5.357 10 C 0.093 3.907 11 N -0.277 5.277 12 C -0.182 4.182 13 C -0.106 4.106 14 C -0.019 4.019 15 C -0.434 4.434 16 H 0.107 0.893 17 C -0.154 4.154 18 N -0.371 5.371 19 Si 0.741 3.259 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.185 1.185 23 C 0.319 3.681 24 O -0.400 6.400 25 N -0.272 5.272 26 H 0.230 0.770 27 C -0.160 4.160 28 C -0.029 4.029 29 Cl -0.038 7.038 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.151 0.849 34 H 0.163 0.837 35 H 0.304 0.696 36 H 0.248 0.752 37 H 0.245 0.755 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.014 6.990 -3.146 21.431 hybrid contribution 1.180 -0.892 0.381 1.528 sum -18.833 6.097 -2.765 19.988 Atomic orbital electron populations 1.20795 0.90437 1.03167 1.02625 1.19653 0.96645 0.91319 1.03991 1.20803 0.93263 0.97095 0.98221 1.21518 0.94746 0.97794 1.06746 1.17967 0.85034 0.93029 0.96493 1.44918 1.02711 1.30803 1.51999 1.18520 0.85887 0.81202 0.85331 1.42344 1.12632 1.22177 1.63492 1.68195 1.01722 1.24411 1.41366 1.18644 0.81698 0.87740 1.02653 1.66470 1.36562 0.99222 1.25484 1.20390 0.90486 0.92021 1.15328 1.19945 0.96324 0.93682 1.00602 1.19989 0.91302 0.92014 0.98599 1.19126 1.11872 0.94208 1.18209 0.89322 1.25959 0.96677 0.97651 0.95141 1.69791 1.24511 1.27617 1.15177 0.86170 0.80270 0.81279 0.78185 1.19313 1.20251 1.18492 1.19372 0.87537 0.83625 0.77603 1.90724 1.13342 1.84564 1.51399 1.44016 1.06294 1.13076 1.63835 0.76979 1.20856 0.92008 0.98561 1.04622 1.20567 0.91722 0.86764 1.03840 1.98364 1.76463 1.32194 1.96745 0.91045 0.91352 0.91070 0.84862 0.83657 0.69628 0.75231 0.75514 0.94173 0.93479 0.92716 0.90665 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.61 36.01 0.35 -0.43 16 2 C -0.11 -1.04 5.89 -104.55 -0.62 -1.65 16 3 C -0.07 -0.60 9.69 -39.62 -0.38 -0.99 16 4 C -0.19 -1.78 7.56 -39.38 -0.30 -2.07 16 5 C 0.18 2.20 6.24 -83.72 -0.52 1.68 16 6 N -0.65 -10.04 4.88 -11.19 -0.05 -10.09 16 7 C 0.65 10.03 8.22 -320.04 -2.63 7.39 16 8 N -0.85 -8.64 7.58 30.14 0.23 -8.41 16 9 N -0.61 -11.52 10.56 -14.54 -0.15 -11.68 16 10 C 0.44 9.88 8.25 -323.00 -2.66 7.21 16 11 N -0.55 -12.12 6.11 -9.71 -0.06 -12.18 16 12 C -0.06 -1.41 6.89 -81.56 -0.56 -1.97 16 13 C -0.05 -0.96 9.25 36.00 0.33 -0.63 16 14 C -0.01 -0.25 5.53 -104.32 -0.58 -0.83 16 15 C -0.40 -10.70 8.18 -38.12 -0.31 -11.01 16 16 H 0.09 2.20 7.50 -52.49 -0.39 1.80 16 17 C 0.07 1.78 4.93 -17.30 -0.09 1.69 16 18 N -0.75 -20.65 10.77 55.55 0.60 -20.05 16 19 Si 0.92 19.39 29.57 -169.99 -5.03 14.37 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 23 C 0.52 14.33 7.42 -12.35 -0.09 14.23 16 24 O -0.52 -15.62 15.06 5.13 0.08 -15.54 16 25 N -0.63 -14.80 5.34 -14.07 -0.08 -14.88 16 26 H 0.39 8.51 8.91 -40.82 -0.36 8.15 16 27 C -0.14 -1.72 9.75 -39.35 -0.38 -2.10 16 28 C 0.00 -0.02 6.31 -39.52 -0.25 -0.27 16 29 Cl -0.07 -0.69 27.28 -51.86 -1.41 -2.11 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.07 0.50 6.90 -51.93 -0.36 0.15 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.15 1.19 5.77 -52.48 -0.30 0.89 16 35 H 0.44 7.98 5.35 -51.30 -0.27 7.70 16 36 H 0.41 3.37 5.22 -40.82 -0.21 3.16 16 37 H 0.41 3.48 8.95 -40.82 -0.37 3.12 16 38 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 39 H 0.05 0.91 7.94 -51.93 -0.41 0.50 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.28 7.21 8.30 -40.82 -0.34 6.87 16 42 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 365.62 15.07 5.51 5.51 Total: -1.00 -31.95 365.62 -13.42 -45.36 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -4.35 Total: 19.42 kcal Atomic # 6 Polarization: 18.96 SS G_CDS: -8.70 Total: 10.27 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: 0.48 Total: -77.28 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.08 Total: -15.54 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.37 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.41 Total: -2.11 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.95 -13.42 -45.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013634109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.429 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds