Wall clock time and date at job start Tue Mar 31 2020 05:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38287 * 119.93332 * 2 1 4 4 C 1.38092 * 120.08222 * 180.29286 * 3 2 1 5 5 C 1.38922 * 119.95596 * 359.72839 * 4 3 2 6 6 N 1.39841 * 120.06911 * 179.97438 * 5 4 3 7 7 C 1.36639 * 120.00027 * 327.03304 * 6 5 4 8 8 N 1.36539 * 119.99868 * 359.83396 * 7 6 5 9 9 N 1.32392 * 120.00075 * 179.83345 * 7 6 5 10 10 C 1.33893 * 120.00123 * 17.95154 * 9 7 6 11 11 N 1.32704 * 118.81708 * 7.07272 * 10 9 7 12 12 C 1.31936 * 122.29749 * 179.97438 * 11 10 9 13 13 C 1.50696 * 120.18570 * 179.97438 * 12 11 10 14 14 C 1.40850 * 119.63320 * 0.02562 * 12 11 10 15 15 C 1.40502 * 121.07131 * 179.97438 * 14 12 11 16 16 H 1.07998 * 120.00079 * 40.48199 * 15 14 12 17 17 C 1.39877 * 119.99901 * 220.48076 * 15 14 12 18 18 N 1.30994 * 119.99997 * 9.16069 * 17 15 14 19 19 Si 1.86801 * 120.00028 * 189.16536 * 17 15 14 20 20 H 1.48499 * 109.47541 * 89.99788 * 19 17 15 21 21 H 1.48503 * 109.47085 * 209.99975 * 19 17 15 22 22 H 1.48500 * 109.47020 * 329.99731 * 19 17 15 23 23 C 1.47413 * 117.85575 * 0.02562 * 14 12 11 24 24 O 1.21762 * 121.06504 * 180.02562 * 23 14 12 25 25 N 1.35162 * 117.87733 * 359.72704 * 23 14 12 26 26 H 0.96997 * 120.02067 * 180.25052 * 25 23 14 27 27 C 1.38853 * 119.86830 * 359.97438 * 5 4 3 28 28 C 1.38251 * 119.91111 * 0.02562 * 27 5 4 29 29 Cl 1.73605 * 119.97398 * 179.97438 * 28 27 5 30 30 H 1.08999 * 109.47184 * 270.25721 * 1 2 3 31 31 H 1.09001 * 109.46579 * 30.25711 * 1 2 3 32 32 H 1.09004 * 109.46774 * 150.25421 * 1 2 3 33 33 H 1.08002 * 119.96012 * 0.02562 * 3 2 1 34 34 H 1.08004 * 120.02064 * 179.69990 * 4 3 2 35 35 H 0.97002 * 120.00384 * 147.03029 * 6 5 4 36 36 H 0.97002 * 119.99849 * 347.49164 * 8 7 6 37 37 H 0.97002 * 120.00253 * 167.49439 * 8 7 6 38 38 H 1.09002 * 109.46717 * 0.02562 * 13 12 11 39 39 H 1.08997 * 109.47499 * 119.99921 * 13 12 11 40 40 H 1.09001 * 109.47348 * 240.00138 * 13 12 11 41 41 H 0.96993 * 119.99632 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.04960 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1984 0.0000 4 6 3.5780 1.2020 -0.0061 5 6 4.2748 0.0002 -0.0066 6 7 5.6732 0.0011 -0.0133 7 6 6.3527 0.9927 -0.6629 8 7 5.6663 1.9809 -1.3083 9 7 7.6766 0.9954 -0.6664 10 6 8.3492 -0.1220 -0.3635 11 7 7.6725 -1.2522 -0.2026 12 6 8.2653 -2.3924 0.0960 13 6 7.4499 -3.6479 0.2685 14 6 9.6644 -2.4295 0.2536 15 6 10.3268 -3.6270 0.5720 16 1 10.0217 -4.5529 0.1072 17 6 11.3812 -3.6200 1.4910 18 7 11.6358 -2.5403 2.1876 19 14 12.4266 -5.1504 1.7249 20 1 13.5748 -5.1143 0.7839 21 1 12.9317 -5.1963 3.1206 22 1 11.6042 -6.3574 1.4562 23 6 10.4113 -1.1713 0.0749 24 8 11.6223 -1.1366 0.1972 25 7 9.7097 -0.0584 -0.2350 26 1 10.1702 0.7857 -0.3632 27 6 3.5800 -1.2020 -0.0003 28 6 2.1975 -1.1992 0.0058 29 17 1.3272 -2.7013 0.0129 30 1 -0.3633 0.0046 1.0276 31 1 -0.3632 0.8877 -0.5178 32 1 -0.3633 -0.8923 -0.5099 33 1 1.6554 2.1327 0.0004 34 1 4.1159 2.1385 -0.0110 35 1 6.1610 -0.7023 0.4432 36 1 4.7133 1.8877 -1.4634 37 1 6.1315 2.7761 -1.6117 38 1 6.3957 -3.4212 0.1091 39 1 7.7742 -4.3944 -0.4564 40 1 7.5898 -4.0363 1.2773 41 1 12.3668 -2.5356 2.8251 42 1 4.1188 -2.1380 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013634109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:22 Heat of formation + Delta-G solvation = 64.994178 kcal Electronic energy + Delta-G solvation = -29466.535620 eV Core-core repulsion = 25280.472212 eV Total energy + Delta-G solvation = -4186.063408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.105 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.90106 -41.08207 -39.41888 -37.92143 -37.28542 -36.30692 -35.10738 -34.45234 -34.14070 -32.00662 -31.72144 -31.10107 -29.40932 -27.30556 -26.38698 -24.32518 -24.06333 -22.89121 -22.52789 -21.68182 -20.08036 -19.35239 -18.82431 -18.48960 -17.65727 -17.22408 -17.03769 -16.58464 -16.43056 -16.13574 -15.95981 -15.50448 -15.36597 -15.14334 -14.83149 -14.77594 -14.44742 -14.09486 -13.74451 -13.58445 -13.30016 -13.19947 -13.07828 -12.97059 -12.89027 -12.74359 -12.60567 -12.45624 -12.25949 -12.03373 -11.80159 -11.21446 -11.08069 -10.91246 -10.73856 -10.51972 -10.31068 -9.97793 -9.83604 -8.98590 -8.67403 -8.26331 -6.00282 -0.11111 0.13554 0.42335 1.10747 1.25352 1.37315 1.46020 1.51690 1.85813 2.03467 2.26487 2.42086 2.58524 2.80419 3.10139 3.59229 3.78216 3.89773 3.94849 4.03190 4.11599 4.31180 4.34465 4.54665 4.73793 4.80667 4.89327 4.91845 5.01831 5.05812 5.10262 5.20071 5.27426 5.28171 5.45688 5.49429 5.58252 5.65058 5.72893 5.86233 6.07273 6.21331 6.27034 6.61143 6.82311 6.82999 6.93436 7.40788 7.66210 7.73691 8.47402 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.002735 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.358047 B =10236.865674 C =11969.167519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.103 4.103 3 C -0.063 4.063 4 C -0.173 4.173 5 C 0.144 3.856 6 N -0.660 5.660 7 C 0.680 3.320 8 N -0.812 5.812 9 N -0.646 5.646 10 C 0.486 3.514 11 N -0.566 5.566 12 C -0.026 4.026 13 C -0.044 4.044 14 C -0.068 4.068 15 C -0.453 4.453 16 H 0.088 0.912 17 C 0.024 3.976 18 N -0.811 5.811 19 Si 0.982 3.018 20 H -0.277 1.277 21 H -0.271 1.271 22 H -0.245 1.245 23 C 0.507 3.493 24 O -0.564 6.564 25 N -0.623 5.623 26 H 0.402 0.598 27 C -0.149 4.149 28 C -0.016 4.016 29 Cl -0.067 7.067 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.175 0.825 34 H 0.164 0.836 35 H 0.432 0.568 36 H 0.425 0.575 37 H 0.428 0.572 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.277 0.723 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.862 9.242 -4.377 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.105 4.105 3 C -0.082 4.082 4 C -0.194 4.194 5 C 0.045 3.955 6 N -0.307 5.307 7 C 0.318 3.682 8 N -0.372 5.372 9 N -0.395 5.395 10 C 0.132 3.868 11 N -0.299 5.299 12 C -0.148 4.148 13 C -0.102 4.102 14 C -0.077 4.077 15 C -0.484 4.484 16 H 0.106 0.894 17 C -0.192 4.192 18 N -0.437 5.437 19 Si 0.803 3.197 20 H -0.203 1.203 21 H -0.196 1.196 22 H -0.168 1.168 23 C 0.304 3.696 24 O -0.443 6.443 25 N -0.268 5.268 26 H 0.239 0.761 27 C -0.171 4.171 28 C -0.044 4.044 29 Cl -0.038 7.038 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.193 0.807 34 H 0.181 0.819 35 H 0.291 0.709 36 H 0.266 0.734 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -25.345 9.408 -4.284 27.372 hybrid contribution 1.925 -1.099 0.475 2.267 sum -23.420 8.308 -3.810 25.140 Atomic orbital electron populations 1.20896 0.88530 1.04284 1.03516 1.20093 0.98105 0.90896 1.01431 1.21252 0.92578 0.98316 0.96035 1.21708 0.95551 0.97062 1.05109 1.18116 0.83442 0.94388 0.99526 1.44818 1.04361 1.30118 1.51447 1.18823 0.85389 0.81346 0.82632 1.42387 1.13260 1.20923 1.60653 1.68292 1.03273 1.23006 1.44926 1.19406 0.81393 0.88981 0.96983 1.66862 1.35612 0.98725 1.28719 1.21061 0.90156 0.93545 1.10057 1.19985 0.97099 0.92229 1.00875 1.20194 0.92465 0.92324 1.02694 1.19124 1.14488 0.94208 1.20581 0.89367 1.26755 0.97722 1.00287 0.94417 1.69899 1.26085 1.30053 1.17641 0.85211 0.78281 0.78316 0.77874 1.20258 1.19613 1.16802 1.19712 0.87426 0.84686 0.77813 1.90663 1.14876 1.85282 1.53440 1.44086 1.07165 1.12898 1.62627 0.76118 1.20816 0.92824 0.98141 1.05279 1.20715 0.91331 0.87690 1.04616 1.98367 1.76224 1.32407 1.96764 0.90149 0.88819 0.91495 0.80731 0.81900 0.70949 0.73401 0.73741 0.91727 0.92671 0.92639 0.91307 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.61 71.24 0.68 -0.34 16 2 C -0.10 -1.40 5.89 -19.82 -0.12 -1.52 16 3 C -0.06 -0.64 9.69 22.25 0.22 -0.43 16 4 C -0.17 -2.42 7.56 22.40 0.17 -2.25 16 5 C 0.14 3.13 6.24 38.17 0.24 3.37 16 6 N -0.66 -18.63 4.88 -189.33 -0.92 -19.56 16 7 C 0.68 18.69 8.22 260.52 2.14 20.83 16 8 N -0.81 -12.64 7.58 -58.55 -0.44 -13.08 16 9 N -0.65 -22.96 10.56 -199.91 -2.11 -25.07 16 10 C 0.49 21.46 8.25 261.55 2.16 23.62 16 11 N -0.57 -24.90 6.11 -184.63 -1.13 -26.03 16 12 C -0.03 -1.25 6.89 43.18 0.30 -0.96 16 13 C -0.04 -1.79 9.25 71.23 0.66 -1.13 16 14 C -0.07 -3.81 5.53 -19.67 -0.11 -3.92 16 15 C -0.45 -25.59 8.18 23.22 0.19 -25.40 16 16 H 0.09 4.67 7.50 -2.91 -0.02 4.65 16 17 C 0.02 1.31 4.93 85.21 0.42 1.73 16 18 N -0.81 -48.47 10.77 21.83 0.24 -48.23 16 19 Si 0.98 42.63 29.57 68.60 2.03 44.66 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.24 -9.75 7.11 99.48 0.71 -9.05 16 23 C 0.51 29.32 7.42 86.60 0.64 29.96 16 24 O -0.56 -36.00 15.06 -4.55 -0.07 -36.07 16 25 N -0.62 -30.29 5.34 -316.39 -1.69 -31.97 16 26 H 0.40 17.80 8.91 -92.71 -0.83 16.98 16 27 C -0.15 -3.37 9.75 22.42 0.22 -3.15 16 28 C -0.02 -0.31 6.31 22.31 0.14 -0.17 16 29 Cl -0.07 -1.25 27.28 -2.72 -0.07 -1.33 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.40 8.09 -2.39 -0.02 0.38 16 32 H 0.07 0.69 6.90 -2.39 -0.02 0.68 16 33 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 34 H 0.16 1.66 5.77 -2.91 -0.02 1.64 16 35 H 0.43 14.99 5.35 -113.40 -0.61 14.39 16 36 H 0.43 4.59 5.22 -92.71 -0.48 4.11 16 37 H 0.43 5.02 8.95 -92.71 -0.83 4.19 16 38 H 0.06 2.23 8.12 -2.39 -0.02 2.21 16 39 H 0.05 2.15 7.94 -2.39 -0.02 2.14 16 40 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.28 15.47 8.30 -92.71 -0.77 14.70 16 42 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -77.17 365.62 2.18 -74.99 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: -1.59 Total: 41.43 kcal Atomic # 6 Polarization: 32.31 SS G_CDS: 7.95 Total: 40.26 kcal Atomic # 7 Polarization: -157.89 SS G_CDS: -6.06 Total: -163.95 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.07 Total: -36.07 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.07 Total: -1.33 kcal Total: -77.17 2.18 -74.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013634109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.984 kcal (2) G-P(sol) polarization free energy of solvation -77.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds