Wall clock time and date at job start Tue Mar 31 2020 05:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47437 * 2 1 4 4 O 1.42902 * 109.46800 * 119.99915 * 2 1 3 5 5 C 1.35805 * 116.99981 * 275.40244 * 4 2 1 6 6 C 1.36668 * 120.23185 * 5.30941 * 5 4 2 7 7 C 1.39183 * 120.92334 * 179.97438 * 6 5 4 8 8 C 1.36170 * 121.06332 * 0.04371 * 7 6 5 9 9 C 1.40527 * 119.77043 * 359.97438 * 8 7 6 10 10 C 1.40546 * 121.27496 * 180.02562 * 9 8 7 11 11 C 1.36110 * 119.64340 * 179.11459 * 10 9 8 12 12 C 1.39367 * 120.97851 * 0.86936 * 11 10 9 13 13 C 1.36125 * 120.97374 * 359.40762 * 12 11 10 14 14 C 1.40414 * 119.66665 * 359.97438 * 13 12 11 15 15 C 1.50701 * 109.46906 * 239.99611 * 2 1 3 16 16 O 1.21286 * 120.00052 * 245.00068 * 15 2 1 17 17 N 1.34772 * 119.99822 * 65.00771 * 15 2 1 18 18 C 1.39244 * 119.99840 * 185.03974 * 17 15 2 19 19 C 1.39483 * 119.83323 * 213.37998 * 18 17 15 20 20 C 1.36374 * 120.16794 * 179.75977 * 19 18 17 21 21 C 1.40866 * 119.82766 * 0.51280 * 20 19 18 22 22 C 1.41157 * 120.16482 * 179.72536 * 21 20 19 23 23 H 1.08005 * 119.99714 * 208.50510 * 22 21 20 24 24 C 1.39901 * 120.00008 * 28.49580 * 22 21 20 25 25 N 1.30875 * 120.00170 * 11.97377 * 24 22 21 26 26 Si 1.86797 * 119.99990 * 191.96968 * 24 22 21 27 27 H 1.48499 * 109.47208 * 60.00273 * 26 24 22 28 28 H 1.48505 * 109.47063 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47479 * 300.00253 * 26 24 22 30 30 C 1.40875 * 119.67307 * 359.73742 * 21 20 19 31 31 C 1.36368 * 119.82660 * 0.02562 * 30 21 20 32 32 H 1.09003 * 109.46880 * 59.99652 * 1 2 3 33 33 H 1.09005 * 109.46741 * 300.00858 * 1 2 3 34 34 H 1.08991 * 109.47437 * 180.02562 * 1 2 3 35 35 H 1.08002 * 119.53481 * 0.02562 * 6 5 4 36 36 H 1.08004 * 119.46974 * 180.02562 * 7 6 5 37 37 H 1.08004 * 120.11979 * 179.97438 * 8 7 6 38 38 H 1.07997 * 120.18126 * 359.95266 * 10 9 8 39 39 H 1.08002 * 119.50984 * 180.25009 * 11 10 9 40 40 H 1.07999 * 119.50741 * 179.43099 * 12 11 10 41 41 H 1.08008 * 120.16507 * 179.97438 * 13 12 11 42 42 H 0.96999 * 120.00547 * 5.03455 * 17 15 2 43 43 H 1.07999 * 119.91470 * 0.02562 * 19 18 17 44 44 H 1.07995 * 120.08561 * 180.25406 * 20 19 18 45 45 H 0.96996 * 120.00118 * 180.02562 * 25 24 22 46 46 H 1.07998 * 120.08228 * 179.97438 * 30 21 20 47 47 H 1.07999 * 119.91608 * 179.97438 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1044 0.0600 2.3054 6 6 1.6550 1.3504 2.3334 7 6 1.7479 2.1151 3.4926 8 6 2.2893 1.6016 4.6316 9 6 2.7634 0.2788 4.6441 10 6 3.3275 -0.2833 5.8021 11 6 3.7597 -1.5738 5.7823 12 6 3.6680 -2.3433 4.6239 13 6 3.1326 -1.8300 3.4824 14 6 2.6644 -0.5063 3.4685 15 6 2.0323 -0.7105 -1.2304 16 8 2.6529 -1.7468 -1.1214 17 7 1.7920 -0.1943 -2.4519 18 6 2.1633 -0.9019 -3.5922 19 6 2.5799 -0.2132 -4.7313 20 6 2.9497 -0.8996 -5.8502 21 6 2.8998 -2.3073 -5.8571 22 6 3.2755 -3.0247 -7.0133 23 1 2.8370 -3.9908 -7.2156 24 6 4.2155 -2.4842 -7.8973 25 7 4.9178 -1.4372 -7.5460 26 14 4.4685 -3.2570 -9.5790 27 1 3.1942 -3.2141 -10.3402 28 1 5.5128 -2.5031 -10.3182 29 1 4.9000 -4.6685 -9.4154 30 6 2.4729 -2.9957 -4.7045 31 6 2.1109 -2.2958 -3.5916 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5140 0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.2209 1.7824 1.4438 36 1 1.3849 3.1324 3.4886 37 1 2.3543 2.2088 5.5225 38 1 3.4053 0.3012 6.7069 39 1 4.1891 -2.0048 6.6746 40 1 4.0267 -3.3619 4.6321 41 1 3.0683 -2.4378 2.5920 42 1 1.3603 0.6702 -2.5368 43 1 2.6138 0.8662 -4.7258 44 1 3.2760 -0.3651 -6.7301 45 1 5.5693 -1.0623 -8.1590 46 1 2.4318 -4.0749 -4.7027 47 1 1.7830 -2.8220 -2.7073 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013709094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:21 Heat of formation + Delta-G solvation = -3.577473 kcal Electronic energy + Delta-G solvation = -30244.082840 eV Core-core repulsion = 26128.726384 eV Total energy + Delta-G solvation = -4115.356456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.12230 -39.93591 -38.63886 -37.18252 -36.16740 -34.52584 -33.28967 -32.61787 -31.48837 -30.41834 -29.60744 -28.90767 -28.85205 -25.56519 -24.45544 -23.47685 -23.26743 -22.05169 -21.46468 -20.75014 -19.68947 -18.36264 -18.03206 -17.36454 -17.15199 -16.61227 -16.24466 -15.87522 -15.64060 -15.21266 -14.97396 -14.55555 -14.38755 -13.99714 -13.96429 -13.73346 -13.54450 -13.34483 -13.01636 -12.90002 -12.71075 -12.51929 -12.18210 -12.16026 -12.04163 -11.83481 -11.60988 -11.39968 -11.21273 -11.19567 -11.12879 -11.05247 -10.93120 -10.77495 -10.02401 -9.69274 -9.60240 -9.43346 -9.17336 -8.95618 -8.87183 -7.75278 -7.59545 -6.99427 -6.74251 -4.35161 0.42314 0.77471 1.88771 2.43017 2.60182 2.82061 2.95482 3.04546 3.06109 3.08638 3.30250 3.73375 3.91974 3.92385 4.44078 4.49034 4.60350 4.60933 4.67869 4.74058 4.78877 4.85405 4.98122 4.98256 5.19565 5.23678 5.30462 5.39577 5.42787 5.64720 5.75155 5.83316 5.85502 5.88161 6.02666 6.14069 6.20451 6.34142 6.36893 6.37614 6.49449 6.68689 6.76456 6.84918 7.00626 7.13088 7.16305 7.24303 7.55144 7.65345 7.81968 7.99291 8.18698 8.24191 8.54482 8.64850 8.85457 8.94190 10.18598 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.001812 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.134359 B =15449.591402 C =16148.224401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.068 3.932 3 H 0.097 0.903 4 O -0.277 6.277 5 C 0.157 3.843 6 C -0.233 4.233 7 C -0.071 4.071 8 C -0.153 4.153 9 C -0.017 4.017 10 C -0.123 4.123 11 C -0.101 4.101 12 C -0.134 4.134 13 C -0.076 4.076 14 C -0.072 4.072 15 C 0.501 3.499 16 O -0.506 6.506 17 N -0.643 5.643 18 C -0.006 4.006 19 C -0.113 4.113 20 C -0.148 4.148 21 C 0.106 3.894 22 C -0.457 4.457 23 H 0.078 0.922 24 C 0.072 3.928 25 N -0.798 5.798 26 Si 0.912 3.088 27 H -0.264 1.264 28 H -0.279 1.279 29 H -0.265 1.265 30 C -0.212 4.212 31 C -0.077 4.077 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.137 0.863 42 H 0.395 0.605 43 H 0.091 0.909 44 H 0.123 0.877 45 H 0.281 0.719 46 H 0.096 0.904 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 8.278 20.993 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.008 3.992 3 H 0.114 0.886 4 O -0.189 6.189 5 C 0.110 3.890 6 C -0.252 4.252 7 C -0.089 4.089 8 C -0.171 4.171 9 C -0.017 4.017 10 C -0.141 4.141 11 C -0.119 4.119 12 C -0.152 4.152 13 C -0.094 4.094 14 C -0.072 4.072 15 C 0.286 3.714 16 O -0.381 6.381 17 N -0.288 5.288 18 C -0.098 4.098 19 C -0.133 4.133 20 C -0.168 4.168 21 C 0.103 3.897 22 C -0.487 4.487 23 H 0.096 0.904 24 C -0.145 4.145 25 N -0.424 5.424 26 Si 0.737 3.263 27 H -0.189 1.189 28 H -0.204 1.204 29 H -0.190 1.190 30 C -0.232 4.232 31 C -0.097 4.097 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.154 0.846 42 H 0.229 0.771 43 H 0.109 0.891 44 H 0.141 0.859 45 H 0.092 0.908 46 H 0.114 0.886 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.806 7.450 20.960 22.990 hybrid contribution 0.022 0.456 -0.846 0.962 sum -5.784 7.906 20.114 22.372 Atomic orbital electron populations 1.22329 0.92561 1.04639 1.03734 1.22274 0.95729 0.97042 0.84157 0.88560 1.86168 1.80193 1.37086 1.15447 1.18772 0.93771 0.90359 0.86048 1.20899 1.09240 0.94492 1.00598 1.20543 0.97013 0.99305 0.92022 1.20855 1.02731 0.94580 0.98972 1.17890 0.97494 0.93745 0.92562 1.20940 1.00227 0.95799 0.97143 1.20922 0.98554 0.94239 0.98171 1.20866 1.00955 1.00460 0.92965 1.21135 0.95405 0.93926 0.98900 1.17471 1.02972 0.95243 0.91539 1.19906 0.81080 0.86620 0.83817 1.90746 1.38313 1.23168 1.85839 1.42812 1.59556 1.22246 1.04165 1.17127 1.14882 0.91109 0.86635 1.20220 1.01912 0.97308 0.93907 1.20928 1.03808 0.94457 0.97589 1.17688 0.88452 0.91981 0.91554 1.19531 1.20323 1.04354 1.04492 0.90409 1.25922 0.94346 0.94410 0.99826 1.69804 1.17251 1.19528 1.35840 0.86301 0.78788 0.79983 0.81245 1.18861 1.20355 1.19005 1.20696 1.11092 0.97922 0.93481 1.20251 0.99870 0.92061 0.97519 0.90011 0.90748 0.90507 0.85158 0.85808 0.85595 0.85450 0.85957 0.85765 0.84558 0.77122 0.89074 0.85900 0.90822 0.88572 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 9.12 37.16 0.34 -1.38 16 2 C 0.07 0.87 2.64 -27.88 -0.07 0.79 16 3 H 0.10 0.99 6.33 -51.93 -0.33 0.66 16 4 O -0.28 -4.10 8.57 -38.99 -0.33 -4.44 16 5 C 0.16 2.04 6.58 -39.12 -0.26 1.79 16 6 C -0.23 -2.45 8.19 -39.80 -0.33 -2.78 16 7 C -0.07 -0.64 9.94 -39.97 -0.40 -1.04 16 8 C -0.15 -1.43 9.77 -39.46 -0.39 -1.81 16 9 C -0.02 -0.19 5.74 -106.84 -0.61 -0.80 16 10 C -0.12 -1.14 9.77 -39.48 -0.39 -1.52 16 11 C -0.10 -0.91 9.95 -39.93 -0.40 -1.31 16 12 C -0.13 -1.40 9.95 -39.92 -0.40 -1.80 16 13 C -0.08 -0.96 9.56 -39.52 -0.38 -1.34 16 14 C -0.07 -0.93 5.75 -106.72 -0.61 -1.55 16 15 C 0.50 8.75 6.91 -10.99 -0.08 8.67 16 16 O -0.51 -11.32 14.17 -14.31 -0.20 -11.52 16 17 N -0.64 -10.87 5.27 -9.74 -0.05 -10.92 16 18 C -0.01 -0.12 6.29 -83.57 -0.53 -0.65 16 19 C -0.11 -2.53 9.89 -39.79 -0.39 -2.92 16 20 C -0.15 -3.74 8.60 -39.26 -0.34 -4.08 16 21 C 0.11 2.81 5.55 -106.80 -0.59 2.22 16 22 C -0.46 -12.05 9.04 -37.85 -0.34 -12.39 16 23 H 0.08 1.96 7.87 -52.48 -0.41 1.55 16 24 C 0.07 1.79 5.23 -17.34 -0.09 1.70 16 25 N -0.80 -20.52 10.88 55.55 0.60 -19.91 16 26 Si 0.91 18.57 29.58 -169.99 -5.03 13.54 16 27 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 28 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 29 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 30 C -0.21 -5.35 9.74 -39.26 -0.38 -5.73 16 31 C -0.08 -1.84 8.57 -39.79 -0.34 -2.18 16 32 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.07 0.61 6.88 -51.93 -0.36 0.26 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.13 1.10 5.32 -52.49 -0.28 0.83 16 36 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 37 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.14 1.85 7.62 -52.48 -0.40 1.45 16 42 H 0.40 4.98 8.77 -40.82 -0.36 4.62 16 43 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.12 3.18 6.23 -52.49 -0.33 2.86 16 45 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 46 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 47 H 0.10 2.39 6.41 -52.49 -0.34 2.06 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -32.03 392.94 -11.80 -43.83 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.74 Total: 11.60 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -6.97 Total: -28.10 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.55 Total: -30.84 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.54 Total: -15.95 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.03 -11.80 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013709094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.249 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds