Wall clock time and date at job start Tue Mar 31 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47437 * 2 1 4 4 O 1.42902 * 109.46800 * 119.99915 * 2 1 3 5 5 C 1.35805 * 116.99981 * 275.40244 * 4 2 1 6 6 C 1.36668 * 120.23185 * 5.30941 * 5 4 2 7 7 C 1.39183 * 120.92334 * 179.97438 * 6 5 4 8 8 C 1.36170 * 121.06332 * 0.04371 * 7 6 5 9 9 C 1.40527 * 119.77043 * 359.97438 * 8 7 6 10 10 C 1.40546 * 121.27496 * 180.02562 * 9 8 7 11 11 C 1.36110 * 119.64340 * 179.11459 * 10 9 8 12 12 C 1.39367 * 120.97851 * 0.86936 * 11 10 9 13 13 C 1.36125 * 120.97374 * 359.40762 * 12 11 10 14 14 C 1.40414 * 119.66665 * 359.97438 * 13 12 11 15 15 C 1.50701 * 109.46906 * 239.99611 * 2 1 3 16 16 O 1.21286 * 120.00052 * 245.00068 * 15 2 1 17 17 N 1.34772 * 119.99822 * 65.00771 * 15 2 1 18 18 C 1.39244 * 119.99840 * 185.03974 * 17 15 2 19 19 C 1.39483 * 119.83323 * 213.37998 * 18 17 15 20 20 C 1.36374 * 120.16794 * 179.75977 * 19 18 17 21 21 C 1.40866 * 119.82766 * 0.51280 * 20 19 18 22 22 C 1.41157 * 120.16482 * 179.72536 * 21 20 19 23 23 H 1.08005 * 119.99714 * 208.50510 * 22 21 20 24 24 C 1.39901 * 120.00008 * 28.49580 * 22 21 20 25 25 N 1.30875 * 120.00170 * 11.97377 * 24 22 21 26 26 Si 1.86797 * 119.99990 * 191.96968 * 24 22 21 27 27 H 1.48499 * 109.47208 * 60.00273 * 26 24 22 28 28 H 1.48505 * 109.47063 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47479 * 300.00253 * 26 24 22 30 30 C 1.40875 * 119.67307 * 359.73742 * 21 20 19 31 31 C 1.36368 * 119.82660 * 0.02562 * 30 21 20 32 32 H 1.09003 * 109.46880 * 59.99652 * 1 2 3 33 33 H 1.09005 * 109.46741 * 300.00858 * 1 2 3 34 34 H 1.08991 * 109.47437 * 180.02562 * 1 2 3 35 35 H 1.08002 * 119.53481 * 0.02562 * 6 5 4 36 36 H 1.08004 * 119.46974 * 180.02562 * 7 6 5 37 37 H 1.08004 * 120.11979 * 179.97438 * 8 7 6 38 38 H 1.07997 * 120.18126 * 359.95266 * 10 9 8 39 39 H 1.08002 * 119.50984 * 180.25009 * 11 10 9 40 40 H 1.07999 * 119.50741 * 179.43099 * 12 11 10 41 41 H 1.08008 * 120.16507 * 179.97438 * 13 12 11 42 42 H 0.96999 * 120.00547 * 5.03455 * 17 15 2 43 43 H 1.07999 * 119.91470 * 0.02562 * 19 18 17 44 44 H 1.07995 * 120.08561 * 180.25406 * 20 19 18 45 45 H 0.96996 * 120.00118 * 180.02562 * 25 24 22 46 46 H 1.07998 * 120.08228 * 179.97438 * 30 21 20 47 47 H 1.07999 * 119.91608 * 179.97438 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1044 0.0600 2.3054 6 6 1.6550 1.3504 2.3334 7 6 1.7479 2.1151 3.4926 8 6 2.2893 1.6016 4.6316 9 6 2.7634 0.2788 4.6441 10 6 3.3275 -0.2833 5.8021 11 6 3.7597 -1.5738 5.7823 12 6 3.6680 -2.3433 4.6239 13 6 3.1326 -1.8300 3.4824 14 6 2.6644 -0.5063 3.4685 15 6 2.0323 -0.7105 -1.2304 16 8 2.6529 -1.7468 -1.1214 17 7 1.7920 -0.1943 -2.4519 18 6 2.1633 -0.9019 -3.5922 19 6 2.5799 -0.2132 -4.7313 20 6 2.9497 -0.8996 -5.8502 21 6 2.8998 -2.3073 -5.8571 22 6 3.2755 -3.0247 -7.0133 23 1 2.8370 -3.9908 -7.2156 24 6 4.2155 -2.4842 -7.8973 25 7 4.9178 -1.4372 -7.5460 26 14 4.4685 -3.2570 -9.5790 27 1 3.1942 -3.2141 -10.3402 28 1 5.5128 -2.5031 -10.3182 29 1 4.9000 -4.6685 -9.4154 30 6 2.4729 -2.9957 -4.7045 31 6 2.1109 -2.2958 -3.5916 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5140 0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.2209 1.7824 1.4438 36 1 1.3849 3.1324 3.4886 37 1 2.3543 2.2088 5.5225 38 1 3.4053 0.3012 6.7069 39 1 4.1891 -2.0048 6.6746 40 1 4.0267 -3.3619 4.6321 41 1 3.0683 -2.4378 2.5920 42 1 1.3603 0.6702 -2.5368 43 1 2.6138 0.8662 -4.7258 44 1 3.2760 -0.3651 -6.7301 45 1 5.5693 -1.0623 -8.1590 46 1 2.4318 -4.0749 -4.7027 47 1 1.7830 -2.8220 -2.7073 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013709094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:19 Heat of formation + Delta-G solvation = -19.432757 kcal Electronic energy + Delta-G solvation = -30244.770377 eV Core-core repulsion = 26128.726384 eV Total energy + Delta-G solvation = -4116.043993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.06144 -41.21848 -39.80102 -38.85169 -36.94623 -36.24146 -34.92618 -33.64760 -32.43893 -31.50439 -31.22285 -30.60300 -29.67821 -27.15577 -25.64750 -24.36096 -24.11082 -23.47032 -22.86541 -22.26998 -21.15347 -19.33576 -19.26912 -19.08488 -18.16084 -17.68174 -17.55699 -17.04156 -16.85013 -16.56676 -16.13375 -15.82064 -15.64436 -15.20138 -15.00889 -14.93967 -14.65160 -14.44436 -14.29533 -14.11496 -14.01054 -13.71710 -13.67491 -13.38856 -13.26736 -12.93595 -12.87277 -12.84714 -12.78438 -12.52138 -12.42090 -11.96070 -11.95930 -11.81010 -11.68293 -11.44844 -11.22887 -10.88795 -10.68284 -10.45551 -9.63542 -9.51141 -8.85860 -8.60060 -8.54194 -6.32157 -0.35999 0.00849 0.72577 1.08535 1.09902 1.38339 1.41483 1.50749 1.52926 1.70249 2.07752 2.21503 2.54527 2.74648 3.13948 3.48270 3.64759 3.68673 3.73710 3.83971 3.91308 3.92123 4.12290 4.20855 4.34542 4.36274 4.44232 4.46252 4.50109 4.60369 4.62535 4.67400 4.88697 4.99398 5.05759 5.08028 5.10668 5.10706 5.14226 5.27068 5.30940 5.38035 5.46341 5.56979 5.61728 5.62986 5.75237 5.84210 5.97458 6.02862 6.06420 6.31555 6.34738 6.60914 6.64283 6.91112 6.94933 7.27110 8.34440 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.001812 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.134359 B =15449.591402 C =16148.224401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.077 3.923 3 H 0.129 0.871 4 O -0.310 6.310 5 C 0.120 3.880 6 C -0.223 4.223 7 C -0.078 4.078 8 C -0.146 4.146 9 C -0.038 4.038 10 C -0.116 4.116 11 C -0.109 4.109 12 C -0.132 4.132 13 C -0.114 4.114 14 C -0.096 4.096 15 C 0.499 3.501 16 O -0.563 6.563 17 N -0.631 5.631 18 C 0.011 3.989 19 C -0.109 4.109 20 C -0.165 4.165 21 C 0.074 3.926 22 C -0.495 4.495 23 H 0.074 0.926 24 C 0.032 3.968 25 N -0.830 5.830 26 Si 0.986 3.014 27 H -0.257 1.257 28 H -0.266 1.266 29 H -0.264 1.264 30 C -0.231 4.231 31 C -0.090 4.090 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.154 0.846 40 H 0.136 0.864 41 H 0.108 0.892 42 H 0.421 0.579 43 H 0.129 0.871 44 H 0.113 0.887 45 H 0.289 0.711 46 H 0.093 0.907 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.192 11.554 23.009 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.018 3.982 3 H 0.146 0.854 4 O -0.223 6.223 5 C 0.074 3.926 6 C -0.242 4.242 7 C -0.096 4.096 8 C -0.164 4.164 9 C -0.038 4.038 10 C -0.134 4.134 11 C -0.127 4.127 12 C -0.150 4.150 13 C -0.132 4.132 14 C -0.096 4.096 15 C 0.286 3.714 16 O -0.441 6.441 17 N -0.278 5.278 18 C -0.082 4.082 19 C -0.129 4.129 20 C -0.185 4.185 21 C 0.072 3.928 22 C -0.525 4.525 23 H 0.092 0.908 24 C -0.182 4.182 25 N -0.456 5.456 26 Si 0.807 3.193 27 H -0.182 1.182 28 H -0.191 1.191 29 H -0.189 1.189 30 C -0.251 4.251 31 C -0.110 4.110 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.170 0.830 36 H 0.176 0.824 37 H 0.175 0.825 38 H 0.179 0.821 39 H 0.171 0.829 40 H 0.154 0.846 41 H 0.126 0.874 42 H 0.259 0.741 43 H 0.147 0.853 44 H 0.131 0.869 45 H 0.099 0.901 46 H 0.111 0.889 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.544 10.776 23.006 26.234 hybrid contribution 0.225 -0.494 -1.213 1.329 sum -6.319 10.282 21.793 24.911 Atomic orbital electron populations 1.22348 0.90048 1.04130 1.06043 1.22287 0.97293 0.97153 0.81517 0.85366 1.86124 1.81234 1.38566 1.16420 1.19008 0.96332 0.91636 0.85581 1.21236 1.07591 0.93300 1.02043 1.20960 0.96676 1.00655 0.91261 1.21284 1.01022 0.93835 1.00290 1.18259 0.98329 0.94713 0.92468 1.21386 0.98401 0.96006 0.97597 1.21260 0.98570 0.94368 0.98463 1.21129 0.99731 1.01264 0.92908 1.21059 0.98439 0.94652 0.99035 1.17789 1.03547 0.95531 0.92739 1.20861 0.79547 0.85849 0.85108 1.90728 1.40720 1.25839 1.86764 1.42667 1.59378 1.22914 1.02817 1.17177 1.12364 0.90659 0.88002 1.20503 1.00406 0.99162 0.92872 1.20952 1.04941 0.94117 0.98484 1.18013 0.89587 0.93040 0.92175 1.19761 1.21966 1.04905 1.05867 0.90765 1.26764 0.93331 0.94808 1.03326 1.69852 1.17741 1.20708 1.37295 0.85187 0.79077 0.78918 0.76113 1.18152 1.19055 1.18864 1.20814 1.12121 0.98097 0.94061 1.20348 1.00392 0.93417 0.96837 0.87500 0.88508 0.92494 0.83033 0.82411 0.82469 0.82120 0.82879 0.84604 0.87360 0.74067 0.85285 0.86869 0.90072 0.88878 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.12 71.98 0.66 -2.30 16 2 C 0.08 1.87 2.64 29.85 0.08 1.95 16 3 H 0.13 2.25 6.33 -2.39 -0.02 2.24 16 4 O -0.31 -9.48 8.57 -72.38 -0.62 -10.10 16 5 C 0.12 3.11 6.58 22.57 0.15 3.25 16 6 C -0.22 -4.11 8.19 22.13 0.18 -3.93 16 7 C -0.08 -1.12 9.94 22.02 0.22 -0.90 16 8 C -0.15 -2.22 9.77 22.35 0.22 -2.00 16 9 C -0.04 -0.77 5.74 -21.30 -0.12 -0.89 16 10 C -0.12 -1.85 9.77 22.34 0.22 -1.63 16 11 C -0.11 -1.79 9.95 22.05 0.22 -1.57 16 12 C -0.13 -2.84 9.95 22.05 0.22 -2.62 16 13 C -0.11 -3.14 9.56 22.31 0.21 -2.93 16 14 C -0.10 -2.53 5.75 -21.23 -0.12 -2.66 16 15 C 0.50 17.40 6.91 87.66 0.61 18.01 16 16 O -0.56 -26.30 14.17 15.94 0.23 -26.08 16 17 N -0.63 -20.49 5.27 -303.10 -1.60 -22.09 16 18 C 0.01 0.49 6.29 38.56 0.24 0.73 16 19 C -0.11 -4.83 9.89 22.13 0.22 -4.61 16 20 C -0.16 -8.55 8.60 22.48 0.19 -8.36 16 21 C 0.07 4.14 5.55 -21.27 -0.12 4.02 16 22 C -0.50 -27.29 9.04 23.39 0.21 -27.07 16 23 H 0.07 3.96 7.87 -2.91 -0.02 3.93 16 24 C 0.03 1.62 5.23 85.24 0.45 2.06 16 25 N -0.83 -43.58 10.88 21.82 0.24 -43.34 16 26 Si 0.99 38.58 29.58 68.60 2.03 40.61 16 27 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 28 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 29 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 30 C -0.23 -12.32 9.74 22.48 0.22 -12.10 16 31 C -0.09 -4.45 8.57 22.13 0.19 -4.26 16 32 H 0.11 1.32 8.10 -2.39 -0.02 1.30 16 33 H 0.10 1.30 6.88 -2.38 -0.02 1.28 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.15 1.97 5.32 -2.91 -0.02 1.95 16 36 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 39 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 41 H 0.11 3.43 7.62 -2.91 -0.02 3.41 16 42 H 0.42 9.30 8.77 -92.71 -0.81 8.49 16 43 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 44 H 0.11 6.03 6.23 -2.91 -0.02 6.01 16 45 H 0.29 13.69 8.30 -92.71 -0.77 12.93 16 46 H 0.09 4.82 8.06 -2.91 -0.02 4.80 16 47 H 0.10 4.87 6.41 -2.91 -0.02 4.86 16 Total: -1.00 -76.45 392.94 4.82 -71.63 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: 0.21 Total: 37.17 kcal Atomic # 6 Polarization: -52.14 SS G_CDS: 4.34 Total: -47.81 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -1.36 Total: -65.43 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.39 Total: -36.18 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -76.45 4.82 -71.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013709094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.201 kcal (2) G-P(sol) polarization free energy of solvation -76.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds