Wall clock time and date at job start Tue Mar 31 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35997 * 117.00591 * 2 1 4 4 C 1.38565 * 120.06729 * 0.02562 * 3 2 1 5 5 C 1.38246 * 119.99695 * 179.97438 * 4 3 2 6 6 C 1.38247 * 120.14492 * 0.03180 * 5 4 3 7 7 C 1.50703 * 119.92551 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.57086 * 56.25417 * 7 6 5 9 9 C 1.53256 * 109.57209 * 295.88010 * 7 6 5 10 10 H 1.08997 * 109.54910 * 174.66099 * 9 7 6 11 11 C 1.53033 * 109.11426 * 54.46489 * 9 7 6 12 12 C 1.52967 * 109.57706 * 180.54369 * 11 9 7 13 13 C 1.53019 * 109.39053 * 60.09794 * 12 11 9 14 14 C 1.52970 * 109.38802 * 299.82222 * 13 12 11 15 15 C 1.53034 * 109.56723 * 60.10999 * 14 13 12 16 16 O 1.42906 * 109.49310 * 60.32284 * 15 14 13 17 17 C 1.53095 * 109.20164 * 180.19959 * 15 14 13 18 18 C 1.53173 * 109.37126 * 181.27859 * 17 15 14 19 19 N 1.46890 * 109.57271 * 176.50614 * 7 6 5 20 20 C 1.36936 * 120.65858 * 246.11811 * 19 7 6 21 21 H 1.08004 * 119.99992 * 331.78954 * 20 19 7 22 22 C 1.38811 * 120.00102 * 151.78548 * 20 19 7 23 23 N 1.31609 * 120.00047 * 343.12131 * 22 20 19 24 24 Si 1.86803 * 119.99927 * 163.12029 * 22 20 19 25 25 H 1.48500 * 109.47169 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47058 * 120.00059 * 24 22 20 27 27 H 1.48493 * 109.47309 * 239.99884 * 24 22 20 28 28 C 1.38243 * 120.15123 * 359.67394 * 6 5 4 29 29 C 1.38574 * 119.99433 * 0.59401 * 28 6 5 30 30 O 1.35996 * 120.07248 * 179.69805 * 29 28 6 31 31 C 1.42899 * 116.99723 * 359.73487 * 30 29 28 32 32 H 1.09000 * 109.46928 * 59.99550 * 1 2 3 33 33 H 1.08999 * 109.47239 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46804 * 300.00109 * 1 2 3 35 35 H 1.07995 * 120.00326 * 359.96323 * 4 3 2 36 36 H 1.07999 * 119.92592 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.45548 * 60.51080 * 11 9 7 38 38 H 1.09006 * 109.43756 * 300.56504 * 11 9 7 39 39 H 1.08997 * 109.47864 * 300.11906 * 12 11 9 40 40 H 1.08998 * 109.49841 * 180.02562 * 12 11 9 41 41 H 1.09007 * 109.48030 * 179.85637 * 13 12 11 42 42 H 1.08992 * 109.50243 * 59.80737 * 13 12 11 43 43 H 1.09002 * 109.45806 * 300.08387 * 14 13 12 44 44 H 1.08996 * 109.43713 * 180.12734 * 14 13 12 45 45 H 0.96701 * 114.00064 * 59.69926 * 16 15 14 46 46 H 1.09001 * 109.48679 * 61.31214 * 17 15 14 47 47 H 1.08996 * 109.49331 * 301.24594 * 17 15 14 48 48 H 1.09004 * 109.59845 * 185.47395 * 18 17 15 49 49 H 1.08993 * 109.72553 * 65.07742 * 18 17 15 50 50 H 0.97001 * 120.00051 * 179.97438 * 23 22 20 51 51 H 1.07999 * 120.01070 * 180.32552 * 28 6 5 52 52 H 1.09006 * 109.46804 * 179.97438 * 31 30 29 53 53 H 1.08995 * 109.47331 * 59.99647 * 31 30 29 54 54 H 1.09001 * 109.46938 * 299.99528 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3747 0.0005 5 6 1.9226 3.6057 0.0011 6 6 3.3031 3.6797 0.0004 7 6 3.9839 5.0242 0.0004 8 1 3.6403 5.6074 0.8547 9 6 3.6529 5.7673 -1.2984 10 1 4.0663 6.7750 -1.2576 11 6 2.1329 5.8375 -1.4622 12 6 1.7907 6.5658 -2.7630 13 6 2.3941 5.8046 -3.9454 14 6 3.9139 5.7386 -3.7845 15 6 4.2604 5.0122 -2.4829 16 8 3.7352 3.6837 -2.5237 17 6 5.7824 4.9553 -2.3278 18 6 6.1343 4.2009 -1.0420 19 7 5.4387 4.8391 0.0840 20 6 6.1329 5.2534 1.1892 21 1 5.7666 6.0814 1.7780 22 6 7.3075 4.6091 1.5528 23 7 7.5852 3.4202 1.0615 24 14 8.4940 5.4297 2.7396 25 1 7.9535 6.7523 3.1446 26 1 8.6617 4.5748 3.9422 27 1 9.8095 5.6142 2.0761 28 6 4.0604 2.5232 0.0060 29 6 3.4360 1.2861 -0.0001 30 8 4.1795 0.1474 -0.0008 31 6 5.6003 0.3005 -0.0009 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 0.2148 2.3197 0.0004 36 1 1.3344 4.5115 0.0011 37 1 1.7016 6.3777 -0.6194 38 1 1.7244 4.8274 -1.4933 39 1 2.2007 7.5753 -2.7331 40 1 0.7079 6.6155 -2.8781 41 1 2.1488 6.3210 -4.8735 42 1 1.9872 4.7938 -3.9731 43 1 4.3201 6.7496 -3.7552 44 1 4.3447 5.1984 -4.6274 45 1 4.0763 3.1482 -3.2531 46 1 6.1807 5.9686 -2.2755 47 1 6.2160 4.4375 -3.1833 48 1 7.2110 4.2418 -0.8771 49 1 5.8165 3.1617 -1.1265 50 1 8.4062 2.9702 1.3153 51 1 5.1387 2.5837 0.0108 52 1 6.0716 -0.6825 -0.0011 53 1 5.9067 0.8498 0.8892 54 1 5.9064 0.8506 -0.8907 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013769181.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:40 Heat of formation + Delta-G solvation = -68.973293 kcal Electronic energy + Delta-G solvation = -36930.214232 eV Core-core repulsion = 32640.546175 eV Total energy + Delta-G solvation = -4289.668057 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.91994 -40.70215 -39.17213 -37.93423 -37.00474 -35.87436 -33.98171 -32.98790 -31.42066 -30.72924 -30.53381 -29.75279 -27.95971 -27.79574 -26.72985 -24.62891 -23.49905 -23.22197 -22.73459 -22.00491 -20.61158 -20.48681 -18.94236 -18.63078 -17.74042 -17.39740 -16.93052 -16.81287 -16.62645 -16.29229 -16.08510 -15.98942 -15.63945 -15.48105 -15.36560 -15.03647 -14.64656 -14.54538 -14.16753 -13.71837 -13.70840 -13.60921 -13.37563 -13.27430 -13.05664 -12.92869 -12.84460 -12.64111 -12.48560 -12.36252 -12.27385 -12.10718 -12.05290 -11.95642 -11.91007 -11.71330 -11.56076 -11.46762 -11.41361 -11.10873 -10.90326 -10.57053 -10.41620 -10.23339 -9.13194 -8.57989 -8.36105 -7.81361 -5.24010 0.74690 0.81312 1.45087 1.49419 1.56873 2.53149 2.58641 2.60166 3.10594 3.32900 3.53395 3.69644 3.89048 3.96630 4.04781 4.14052 4.23276 4.30510 4.33407 4.41039 4.44540 4.49570 4.50958 4.52144 4.54307 4.65015 4.72324 4.73805 4.76091 4.78558 4.87815 4.88381 4.90789 4.94418 4.99019 5.04852 5.14047 5.17427 5.21844 5.28950 5.39789 5.43722 5.46471 5.53655 5.54423 5.61950 5.65717 5.72862 5.76227 5.90859 6.08952 6.21234 6.34359 6.47565 6.89033 7.11367 7.23302 7.93488 8.46419 9.23238 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.007917 B = 0.005766 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.705474 B = 4854.484581 C = 7014.012933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.340 6.340 3 C 0.068 3.932 4 C -0.177 4.177 5 C -0.123 4.123 6 C -0.052 4.052 7 C 0.207 3.793 8 H 0.054 0.946 9 C -0.065 4.065 10 H 0.065 0.935 11 C -0.128 4.128 12 C -0.113 4.113 13 C -0.106 4.106 14 C -0.137 4.137 15 C 0.157 3.843 16 O -0.543 6.543 17 C -0.162 4.162 18 C 0.171 3.829 19 N -0.590 5.590 20 C -0.259 4.259 21 H 0.058 0.942 22 C -0.035 4.035 23 N -0.918 5.918 24 Si 0.953 3.047 25 H -0.273 1.273 26 H -0.298 1.298 27 H -0.293 1.293 28 C -0.148 4.148 29 C 0.056 3.944 30 O -0.334 6.334 31 C 0.044 3.956 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.060 0.940 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.367 0.633 46 H 0.050 0.950 47 H 0.064 0.936 48 H 0.046 0.954 49 H 0.028 0.972 50 H 0.248 0.752 51 H 0.157 0.843 52 H 0.115 0.885 53 H 0.036 0.964 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 0.670 -9.838 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.255 6.255 3 C 0.024 3.976 4 C -0.195 4.195 5 C -0.141 4.141 6 C -0.055 4.055 7 C 0.100 3.900 8 H 0.072 0.928 9 C -0.085 4.085 10 H 0.083 0.917 11 C -0.165 4.165 12 C -0.150 4.150 13 C -0.144 4.144 14 C -0.175 4.175 15 C 0.116 3.884 16 O -0.348 6.348 17 C -0.201 4.201 18 C 0.046 3.954 19 N -0.310 5.310 20 C -0.389 4.389 21 H 0.076 0.924 22 C -0.232 4.232 23 N -0.564 5.564 24 Si 0.783 3.217 25 H -0.198 1.198 26 H -0.225 1.225 27 H -0.220 1.220 28 C -0.166 4.166 29 C 0.012 3.988 30 O -0.249 6.249 31 C -0.050 4.050 32 H 0.082 0.918 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.171 0.829 36 H 0.165 0.835 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.213 0.787 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.064 0.936 49 H 0.045 0.955 50 H 0.057 0.943 51 H 0.174 0.826 52 H 0.133 0.867 53 H 0.055 0.945 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.640 0.427 -9.254 16.488 hybrid contribution 1.828 0.334 0.486 1.921 sum -11.812 0.761 -8.768 14.730 Atomic orbital electron populations 1.23241 0.77156 1.04940 1.01913 1.86079 1.22838 1.26682 1.89895 1.18329 0.88779 0.85641 1.04883 1.21065 1.00100 0.90748 1.07625 1.21122 0.93779 0.97633 1.01611 1.20195 0.93201 0.95549 0.96520 1.19597 0.83539 0.91216 0.95666 0.92770 1.21371 0.96580 0.97169 0.93393 0.91657 1.22172 0.94104 1.02506 0.97767 1.21506 1.00719 0.98557 0.94257 1.21378 0.94186 1.00793 0.98032 1.22171 0.97590 1.00800 0.96926 1.20835 0.90367 0.83092 0.94112 1.86755 1.70006 1.23876 1.54152 1.22761 0.97508 1.00777 0.99083 1.20824 0.96232 0.93745 0.84579 1.44136 1.00969 1.70193 1.15751 1.19400 1.05137 1.09621 1.04744 0.92412 1.25501 1.01762 0.95673 1.00262 1.70072 1.25331 1.12857 1.48111 0.85424 0.79383 0.78212 0.78645 1.19810 1.22546 1.21955 1.21775 1.02786 0.90238 1.01810 1.18659 0.88843 0.86336 1.05005 1.85981 1.19458 1.29529 1.89954 1.22898 0.77792 1.03423 1.00937 0.91839 0.86835 0.92184 0.82914 0.83459 0.91923 0.88969 0.92506 0.90862 0.91283 0.91972 0.91839 0.91315 0.78661 0.93077 0.91715 0.93557 0.95453 0.94278 0.82641 0.86668 0.94476 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.81 113.37 1.11 1.58 16 2 O -0.34 -11.61 10.28 -79.65 -0.82 -12.43 16 3 C 0.07 2.54 6.70 22.57 0.15 2.69 16 4 C -0.18 -5.52 9.04 22.35 0.20 -5.32 16 5 C -0.12 -4.03 7.24 22.27 0.16 -3.87 16 6 C -0.05 -2.04 3.18 -19.86 -0.06 -2.10 16 7 C 0.21 8.31 2.70 44.26 0.12 8.43 16 8 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 9 C -0.07 -2.10 1.93 -10.68 -0.02 -2.12 16 10 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 11 C -0.13 -3.29 3.49 30.59 0.11 -3.18 16 12 C -0.11 -2.34 5.93 30.59 0.18 -2.16 16 13 C -0.11 -2.18 5.78 30.59 0.18 -2.01 16 14 C -0.14 -3.21 4.89 30.60 0.15 -3.06 16 15 C 0.16 4.67 0.55 -10.74 -0.01 4.66 16 16 O -0.54 -16.68 7.71 -148.98 -1.15 -17.83 16 17 C -0.16 -5.72 5.06 30.68 0.16 -5.56 16 18 C 0.17 7.68 4.16 86.35 0.36 8.04 16 19 N -0.59 -27.69 2.06 -679.35 -1.40 -29.09 16 20 C -0.26 -13.71 9.58 84.03 0.81 -12.90 16 21 H 0.06 3.08 7.88 -2.91 -0.02 3.05 16 22 C -0.04 -1.89 4.92 84.86 0.42 -1.48 16 23 N -0.92 -50.50 11.20 21.65 0.24 -50.26 16 24 Si 0.95 44.27 29.59 68.60 2.03 46.30 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 26 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 28 C -0.15 -6.45 6.20 22.35 0.14 -6.31 16 29 C 0.06 2.38 6.70 22.57 0.15 2.53 16 30 O -0.33 -14.25 10.28 -79.64 -0.82 -15.07 16 31 C 0.04 1.72 9.81 113.37 1.11 2.83 16 32 H 0.06 1.16 7.66 -2.39 -0.02 1.15 16 33 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.14 7.66 -2.39 -0.02 1.12 16 35 H 0.15 3.59 6.30 -2.91 -0.02 3.57 16 36 H 0.15 4.03 5.42 -2.91 -0.02 4.01 16 37 H 0.06 1.50 7.79 -2.39 -0.02 1.48 16 38 H 0.09 2.51 4.13 -2.38 -0.01 2.50 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.06 1.37 7.70 -2.39 -0.02 1.35 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.37 9.57 9.04 -74.06 -0.67 8.90 16 46 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.05 2.41 6.06 -2.39 -0.01 2.39 16 49 H 0.03 1.31 4.38 -2.39 -0.01 1.30 16 50 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 51 H 0.16 7.60 2.78 -2.91 -0.01 7.59 16 52 H 0.12 3.60 8.14 -2.38 -0.02 3.58 16 53 H 0.04 1.64 7.65 -2.39 -0.02 1.63 16 54 H 0.05 1.80 7.43 -2.39 -0.02 1.78 16 Total: -1.00 -64.58 389.64 3.76 -60.82 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: 0.26 Total: 36.85 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 5.41 Total: -19.30 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -1.16 Total: -79.35 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -2.79 Total: -45.32 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -64.58 3.76 -60.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013769181.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.152 kcal (2) G-P(sol) polarization free energy of solvation -64.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds