Wall clock time and date at job start Tue Mar 31 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35998 * 116.99597 * 2 1 4 4 C 1.38564 * 120.07643 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.00155 * 179.97438 * 4 3 2 6 6 C 1.38246 * 120.14217 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.92661 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.57644 * 166.01863 * 7 6 5 9 9 C 1.53107 * 109.67860 * 286.34200 * 7 6 5 10 10 H 1.09006 * 109.46342 * 294.30633 * 9 7 6 11 11 C 1.52978 * 109.56415 * 54.35279 * 9 7 6 12 12 C 1.53011 * 109.40745 * 180.31098 * 11 9 7 13 13 C 1.52989 * 109.51831 * 300.13676 * 12 11 9 14 14 C 1.53001 * 109.53832 * 59.80525 * 13 12 11 15 15 C 1.53070 * 109.47482 * 174.30802 * 9 7 6 16 16 O 1.42904 * 109.79825 * 59.24682 * 15 9 7 17 17 C 1.53090 * 109.49873 * 298.92502 * 15 9 7 18 18 C 1.53174 * 109.36286 * 61.25307 * 17 15 9 19 19 N 1.46925 * 109.56646 * 45.77256 * 7 6 5 20 20 C 1.36934 * 120.66781 * 6.49803 * 19 7 6 21 21 H 1.08004 * 119.99914 * 35.44232 * 20 19 7 22 22 C 1.38809 * 120.00347 * 215.45459 * 20 19 7 23 23 N 1.31623 * 119.99979 * 11.43783 * 22 20 19 24 24 Si 1.86796 * 120.00127 * 191.44509 * 22 20 19 25 25 H 1.48495 * 109.47374 * 59.99623 * 24 22 20 26 26 H 1.48503 * 109.46986 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46846 * 299.99195 * 24 22 20 28 28 C 1.38244 * 120.15027 * 0.27234 * 6 5 4 29 29 C 1.38561 * 119.99865 * 359.45273 * 28 6 5 30 30 O 1.35997 * 120.07706 * 180.29813 * 29 28 6 31 31 C 1.42902 * 116.99522 * 0.24903 * 30 29 28 32 32 H 1.09011 * 109.47202 * 59.99722 * 1 2 3 33 33 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47767 * 299.99963 * 1 2 3 35 35 H 1.08004 * 120.00051 * 359.97438 * 4 3 2 36 36 H 1.07998 * 119.92796 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.48518 * 60.32789 * 11 9 7 38 38 H 1.09003 * 109.46953 * 300.29025 * 11 9 7 39 39 H 1.09001 * 109.46500 * 180.12384 * 12 11 9 40 40 H 1.08996 * 109.46380 * 60.14850 * 12 11 9 41 41 H 1.09000 * 109.45430 * 179.82529 * 13 12 11 42 42 H 1.08996 * 109.45527 * 299.78200 * 13 12 11 43 43 H 1.08998 * 109.49416 * 59.87854 * 14 13 12 44 44 H 1.09003 * 109.49169 * 179.97438 * 14 13 12 45 45 H 0.96703 * 113.99757 * 179.97438 * 16 15 9 46 46 H 1.08997 * 109.48975 * 181.22371 * 17 15 9 47 47 H 1.09003 * 109.49021 * 301.27192 * 17 15 9 48 48 H 1.09004 * 109.58679 * 64.97603 * 18 17 15 49 49 H 1.08994 * 109.59420 * 185.26817 * 18 17 15 50 50 H 0.96999 * 120.00575 * 180.02562 * 23 22 20 51 51 H 1.08006 * 119.99897 * 179.70444 * 28 6 5 52 52 H 1.09001 * 109.47164 * 59.99659 * 31 30 29 53 53 H 1.09003 * 109.46904 * 179.97438 * 31 30 29 54 54 H 1.08997 * 109.47439 * 299.99899 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9223 3.6058 0.0011 6 6 3.3027 3.6799 0.0016 7 6 3.9836 5.0244 0.0016 8 1 5.0375 4.9001 0.2502 9 6 3.8551 5.6674 -1.3820 10 1 4.4110 5.0765 -2.1101 11 6 2.3810 5.7205 -1.7873 12 6 2.2574 6.3565 -3.1735 13 6 2.8313 7.7742 -3.1385 14 6 4.3044 7.7200 -2.7288 15 6 4.4218 7.0887 -1.3388 16 8 5.7950 7.0505 -0.9453 17 6 3.6244 7.9265 -0.3359 18 6 3.7557 7.3087 1.0596 19 7 3.3439 5.8998 0.9932 20 6 2.3829 5.4127 1.8383 21 1 2.4558 4.4026 2.2139 22 6 1.3150 6.2167 2.2121 23 7 1.0994 7.3560 1.5893 24 14 0.1839 5.6820 3.5992 25 1 0.9714 5.5278 4.8486 26 1 -0.8698 6.7085 3.8023 27 1 -0.4489 4.3848 3.2496 28 6 4.0602 2.5234 -0.0041 29 6 3.4359 1.2864 0.0011 30 8 4.1795 0.1477 0.0017 31 6 5.6003 0.3008 0.0022 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 0.2145 2.3197 0.0005 36 1 1.3341 4.5116 0.0011 37 1 1.8260 6.3168 -1.0630 38 1 1.9747 4.7094 -1.8136 39 1 1.2072 6.3968 -3.4623 40 1 2.8105 5.7587 -3.8979 41 1 2.7456 8.2251 -4.1271 42 1 2.2755 8.3731 -2.4170 43 1 4.8604 7.1197 -3.4490 44 1 4.7126 8.7304 -2.7045 45 1 6.2151 7.9203 -0.8985 46 1 4.0141 8.9443 -0.3212 47 1 2.5747 7.9431 -0.6291 48 1 4.7923 7.3713 1.3909 49 1 3.1155 7.8463 1.7590 50 1 0.3534 7.9182 1.8507 51 1 5.1385 2.5842 -0.0085 52 1 5.9061 0.8509 0.8922 53 1 6.0716 -0.6821 0.0031 54 1 5.9069 0.8504 -0.8877 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013769185.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:45 Heat of formation + Delta-G solvation = -88.590180 kcal Electronic energy + Delta-G solvation = -36299.563391 eV Core-core repulsion = 32009.044683 eV Total energy + Delta-G solvation = -4290.518709 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.88116 -40.99006 -39.29359 -38.34943 -36.56717 -36.30262 -33.94870 -32.72695 -31.36031 -30.95493 -30.62798 -29.57991 -28.03045 -27.75173 -26.99175 -24.60621 -23.54169 -23.18782 -22.97168 -22.24660 -21.18335 -19.40649 -19.35193 -18.36391 -17.89336 -17.52333 -17.22744 -16.90309 -16.62376 -16.32308 -16.07871 -15.91245 -15.64989 -15.50924 -15.42206 -15.21155 -14.81497 -14.44035 -14.27944 -14.02468 -13.81166 -13.63583 -13.50397 -13.27276 -12.99635 -12.92242 -12.84807 -12.71634 -12.65176 -12.42787 -12.22706 -12.14222 -12.02471 -12.01981 -11.93590 -11.81217 -11.78141 -11.56705 -11.42314 -11.13519 -10.96953 -10.69501 -10.46489 -10.10549 -9.51987 -8.63365 -8.23288 -7.72596 -5.24393 0.44228 0.64353 1.45858 1.49216 1.53509 2.43529 2.45806 2.54912 2.86954 3.38557 3.45511 3.67931 3.87739 3.91777 3.98227 4.09841 4.19498 4.22693 4.33939 4.39241 4.40711 4.41918 4.43125 4.47852 4.52259 4.56166 4.60968 4.64677 4.71982 4.73237 4.74066 4.75586 4.86879 4.90349 4.99082 5.07118 5.11796 5.15823 5.16956 5.24298 5.32812 5.38941 5.47745 5.50782 5.55825 5.59139 5.70800 5.75543 5.83797 5.89880 5.96919 6.04916 6.19189 6.57385 6.72357 7.06753 7.29190 7.95311 8.53732 9.26563 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.008287 B = 0.005109 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.109774 B = 5479.358726 C = 7027.640242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.082 3.918 4 C -0.194 4.194 5 C -0.060 4.060 6 C -0.074 4.074 7 C 0.219 3.781 8 H 0.027 0.973 9 C -0.066 4.066 10 H 0.058 0.942 11 C -0.110 4.110 12 C -0.116 4.116 13 C -0.113 4.113 14 C -0.133 4.133 15 C 0.146 3.854 16 O -0.572 6.572 17 C -0.139 4.139 18 C 0.169 3.831 19 N -0.587 5.587 20 C -0.230 4.230 21 H 0.046 0.954 22 C -0.023 4.023 23 N -0.905 5.905 24 Si 0.934 3.066 25 H -0.292 1.292 26 H -0.293 1.293 27 H -0.280 1.280 28 C -0.166 4.166 29 C 0.070 3.930 30 O -0.329 6.329 31 C 0.021 3.979 32 H 0.062 0.938 33 H 0.122 0.878 34 H 0.052 0.948 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.382 0.618 46 H 0.053 0.947 47 H 0.073 0.927 48 H -0.003 1.003 49 H 0.063 0.937 50 H 0.248 0.752 51 H 0.141 0.859 52 H 0.053 0.947 53 H 0.122 0.878 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.277 -5.009 -9.563 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.244 6.244 3 C 0.036 3.964 4 C -0.212 4.212 5 C -0.079 4.079 6 C -0.075 4.075 7 C 0.114 3.886 8 H 0.044 0.956 9 C -0.086 4.086 10 H 0.076 0.924 11 C -0.148 4.148 12 C -0.153 4.153 13 C -0.150 4.150 14 C -0.170 4.170 15 C 0.106 3.894 16 O -0.379 6.379 17 C -0.178 4.178 18 C 0.044 3.956 19 N -0.310 5.310 20 C -0.360 4.360 21 H 0.063 0.937 22 C -0.221 4.221 23 N -0.549 5.549 24 Si 0.764 3.236 25 H -0.219 1.219 26 H -0.219 1.219 27 H -0.206 1.206 28 C -0.186 4.186 29 C 0.025 3.975 30 O -0.244 6.244 31 C -0.073 4.073 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.071 0.929 35 H 0.159 0.841 36 H 0.147 0.853 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.230 0.770 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.015 0.985 49 H 0.081 0.919 50 H 0.057 0.943 51 H 0.159 0.841 52 H 0.072 0.928 53 H 0.140 0.860 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.045 -5.916 -9.503 11.902 hybrid contribution -0.736 0.898 1.248 1.705 sum 3.310 -5.017 -8.255 10.211 Atomic orbital electron populations 1.23271 0.77144 1.05256 1.01726 1.86068 1.22734 1.26035 1.89518 1.18321 0.89378 0.85238 1.03423 1.21193 1.00327 0.91280 1.08440 1.21004 0.94588 0.96954 0.95330 1.19658 0.93818 0.94295 0.99752 1.19411 0.93325 0.86763 0.89141 0.95560 1.21259 0.96199 0.94549 0.96634 0.92359 1.21738 0.95332 1.00656 0.97042 1.21553 1.00704 0.96450 0.96609 1.21492 0.95219 0.96859 1.01472 1.22172 0.97425 1.01118 0.96321 1.21061 0.80774 0.94935 0.92632 1.86488 1.24596 1.35204 1.91583 1.22466 1.01260 0.97106 0.96937 1.20625 0.94168 0.84840 0.95937 1.44106 1.43636 1.06243 1.37059 1.18885 0.99550 0.98335 1.19242 0.93675 1.25469 0.97616 0.98297 1.00691 1.69994 1.30234 1.13191 1.41513 0.85868 0.79329 0.77375 0.80998 1.21900 1.21914 1.20618 1.20987 1.00450 0.90332 1.06788 1.18162 0.88396 0.86055 1.04888 1.86071 1.20203 1.28361 1.89755 1.23262 0.77283 1.05091 1.01704 0.91945 0.85946 0.92938 0.84108 0.85342 0.91520 0.92539 0.92022 0.91767 0.90396 0.92824 0.91338 0.90681 0.76978 0.92863 0.90867 0.98515 0.91879 0.94264 0.84138 0.92815 0.85976 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.81 113.37 1.11 1.60 16 2 O -0.33 -11.06 10.28 -79.66 -0.82 -11.87 16 3 C 0.08 3.01 6.70 22.57 0.15 3.16 16 4 C -0.19 -7.18 9.04 22.35 0.20 -6.98 16 5 C -0.06 -2.48 4.92 22.27 0.11 -2.37 16 6 C -0.07 -3.01 3.85 -19.86 -0.08 -3.09 16 7 C 0.22 9.15 2.65 44.20 0.12 9.27 16 8 H 0.03 1.17 7.66 -2.39 -0.02 1.15 16 9 C -0.07 -2.41 1.80 -10.74 -0.02 -2.43 16 10 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 11 C -0.11 -4.01 3.42 30.59 0.10 -3.91 16 12 C -0.12 -3.36 5.92 30.59 0.18 -3.18 16 13 C -0.11 -3.03 5.64 30.59 0.17 -2.85 16 14 C -0.13 -3.51 5.08 30.63 0.16 -3.36 16 15 C 0.15 4.82 0.73 -10.70 -0.01 4.81 16 16 O -0.57 -18.28 11.82 -148.98 -1.76 -20.05 16 17 C -0.14 -5.27 4.34 30.68 0.13 -5.14 16 18 C 0.17 7.70 5.40 86.35 0.47 8.17 16 19 N -0.59 -27.55 2.40 -679.56 -1.63 -29.18 16 20 C -0.23 -11.77 6.17 84.03 0.52 -11.25 16 21 H 0.05 2.46 6.66 -2.91 -0.02 2.44 16 22 C -0.02 -1.20 5.03 84.86 0.43 -0.77 16 23 N -0.90 -47.47 11.04 21.65 0.24 -47.23 16 24 Si 0.93 43.42 29.57 68.60 2.03 45.45 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 28 C -0.17 -6.11 8.66 22.35 0.19 -5.91 16 29 C 0.07 2.57 6.70 22.57 0.15 2.72 16 30 O -0.33 -10.97 10.28 -79.65 -0.82 -11.79 16 31 C 0.02 0.49 9.81 113.37 1.11 1.60 16 32 H 0.06 1.34 7.66 -2.38 -0.02 1.32 16 33 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 1.25 7.66 -2.39 -0.02 1.23 16 35 H 0.14 4.59 6.30 -2.91 -0.02 4.57 16 36 H 0.13 5.95 5.22 -2.91 -0.02 5.94 16 37 H 0.07 2.94 5.66 -2.39 -0.01 2.92 16 38 H 0.06 2.13 5.30 -2.39 -0.01 2.11 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.05 1.64 6.40 -2.39 -0.02 1.62 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.38 9.08 9.05 -74.05 -0.67 8.41 16 46 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.07 3.13 4.63 -2.39 -0.01 3.12 16 48 H 0.00 -0.14 7.82 -2.38 -0.02 -0.15 16 49 H 0.06 3.26 5.78 -2.39 -0.01 3.25 16 50 H 0.25 12.94 8.31 -92.71 -0.77 12.17 16 51 H 0.14 4.56 6.24 -2.91 -0.02 4.54 16 52 H 0.05 1.23 7.67 -2.39 -0.02 1.21 16 53 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 54 H 0.06 1.30 7.65 -2.39 -0.02 1.28 16 Total: -1.00 -61.85 391.35 2.70 -59.15 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.26 Total: 35.45 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 5.21 Total: -19.91 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -1.39 Total: -76.41 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -3.40 Total: -43.71 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -61.85 2.70 -59.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013769185.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.445 kcal (2) G-P(sol) polarization free energy of solvation -61.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds