Wall clock time and date at job start Tue Mar 31 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35991 * 116.99990 * 2 1 4 4 C 1.38717 * 119.99808 * 0.02562 * 3 2 1 5 5 C 1.38105 * 120.00108 * 180.02562 * 4 3 2 6 6 C 1.38716 * 119.99832 * 359.97438 * 5 4 3 7 7 O 1.35990 * 119.99826 * 180.02562 * 6 5 4 8 8 C 1.42889 * 117.00058 * 0.02562 * 7 6 5 9 9 C 1.38678 * 120.00379 * 0.27964 * 6 5 4 10 10 C 1.50697 * 120.00389 * 179.72187 * 9 6 5 11 11 H 1.08996 * 109.57867 * 318.12403 * 10 9 6 12 12 C 1.53226 * 109.58197 * 197.85050 * 10 9 6 13 13 H 1.09001 * 109.57000 * 305.72502 * 12 10 9 14 14 C 1.53066 * 109.22980 * 66.11860 * 12 10 9 15 15 C 1.53001 * 109.41619 * 59.32836 * 14 12 10 16 16 C 1.52991 * 109.52249 * 60.04606 * 15 14 12 17 17 C 1.53015 * 109.49314 * 300.12266 * 16 15 14 18 18 C 1.52970 * 109.42145 * 59.91619 * 17 16 15 19 19 O 1.42897 * 109.41914 * 59.69308 * 18 17 16 20 20 C 1.52977 * 109.46505 * 179.58784 * 18 17 16 21 21 C 1.53195 * 109.38450 * 58.90420 * 20 18 17 22 22 N 1.46850 * 108.60808 * 54.88681 * 21 20 18 23 23 C 1.36938 * 120.78948 * 126.16818 * 22 21 20 24 24 H 1.08008 * 120.00339 * 209.61333 * 23 22 21 25 25 C 1.38810 * 119.99889 * 29.61459 * 23 22 21 26 26 N 1.31624 * 119.99974 * 15.31954 * 25 23 22 27 27 Si 1.86801 * 120.00044 * 195.31633 * 25 23 22 28 28 H 1.48498 * 109.47158 * 90.00245 * 27 25 23 29 29 H 1.48502 * 109.47211 * 210.00072 * 27 25 23 30 30 H 1.48503 * 109.47301 * 329.99918 * 27 25 23 31 31 C 1.38160 * 119.99685 * 359.46940 * 9 6 5 32 32 H 1.08999 * 109.47011 * 59.99814 * 1 2 3 33 33 H 1.09004 * 109.46591 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46993 * 299.99483 * 1 2 3 35 35 H 1.08003 * 119.99657 * 359.97438 * 4 3 2 36 36 H 1.08002 * 120.00179 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47533 * 300.00363 * 8 7 6 38 38 H 1.09004 * 109.47309 * 59.99939 * 8 7 6 39 39 H 1.09005 * 109.47250 * 180.02562 * 8 7 6 40 40 H 1.09001 * 109.47813 * 179.31518 * 14 12 10 41 41 H 1.09004 * 109.47491 * 299.34381 * 14 12 10 42 42 H 1.08997 * 109.46398 * 300.02942 * 15 14 12 43 43 H 1.09002 * 109.45907 * 180.02562 * 15 14 12 44 44 H 1.08995 * 109.46964 * 180.11535 * 16 15 14 45 45 H 1.09004 * 109.46272 * 60.12590 * 16 15 14 46 46 H 1.08999 * 109.47818 * 299.93262 * 17 16 15 47 47 H 1.08994 * 109.48997 * 179.90793 * 17 16 15 48 48 H 0.96695 * 113.99879 * 60.09123 * 19 18 17 49 49 H 1.08997 * 109.48577 * 178.87289 * 20 18 17 50 50 H 1.08996 * 109.48528 * 298.91427 * 20 18 17 51 51 H 1.09000 * 109.58437 * 174.35686 * 21 20 18 52 52 H 1.08999 * 109.58808 * 294.79842 * 21 20 18 53 53 H 0.97000 * 119.99750 * 179.97438 * 26 25 23 54 54 H 1.07989 * 120.00212 * 180.23224 * 31 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9177 3.6056 0.0000 6 6 3.3030 3.6782 -0.0005 7 8 3.9203 4.8899 -0.0005 8 6 3.0804 6.0459 0.0006 9 6 4.0584 2.5153 -0.0064 10 6 5.5633 2.5942 -0.0133 11 1 5.8848 3.3783 -0.6988 12 6 6.1460 1.2497 -0.4613 13 1 5.7475 0.4520 0.1656 14 6 5.7696 0.9992 -1.9236 15 6 6.3239 2.1301 -2.7924 16 6 7.8473 2.1770 -2.6597 17 6 8.2252 2.4229 -1.1975 18 6 7.6705 1.2905 -0.3314 19 8 8.2181 0.0454 -0.7695 20 6 8.0564 1.5300 1.1293 21 6 7.4943 2.8788 1.5892 22 7 6.0469 2.8922 1.3416 23 6 5.1660 3.1830 2.3489 24 1 4.1744 2.7550 2.3395 25 6 5.5475 4.0278 3.3821 26 7 6.6187 4.7820 3.2541 27 14 4.5407 4.0946 4.9541 28 1 5.0590 3.0898 5.9170 29 1 4.6434 5.4506 5.5506 30 1 3.1192 3.7964 4.6446 31 6 3.4313 1.2842 -0.0006 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 0.2123 2.3184 0.0005 36 1 1.3295 4.5114 0.0000 37 1 2.4503 6.0382 -0.8888 38 1 2.4518 6.0375 0.8911 39 1 3.6982 6.9440 0.0000 40 1 6.1925 0.0492 -2.2502 41 1 4.6842 0.9661 -2.0189 42 1 5.9014 3.0801 -2.4650 43 1 6.0558 1.9527 -3.8339 44 1 8.2411 2.9842 -3.2773 45 1 8.2700 1.2279 -2.9895 46 1 7.8036 3.3725 -0.8679 47 1 9.3105 2.4546 -1.1027 48 1 9.1824 -0.0009 -0.7151 49 1 7.6444 0.7339 1.7495 50 1 9.1424 1.5378 1.2218 51 1 7.6805 3.0079 2.6554 52 1 7.9738 3.6836 1.0321 53 1 6.8850 5.3726 3.9760 54 1 4.0194 0.3786 -0.0014 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013776152.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:59 Heat of formation + Delta-G solvation = -90.365225 kcal Electronic energy + Delta-G solvation = -36668.422240 eV Core-core repulsion = 32377.826559 eV Total energy + Delta-G solvation = -4290.595680 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.02410 -40.83040 -39.71973 -37.67997 -36.79706 -36.13031 -33.91709 -33.52438 -31.37994 -31.08275 -30.44752 -29.13806 -28.04137 -27.62502 -26.93523 -25.07385 -23.74069 -23.44852 -22.66543 -22.06274 -21.59828 -19.24749 -19.11390 -18.50116 -17.95014 -17.54399 -17.27186 -17.04272 -16.53274 -16.31625 -16.23086 -15.94828 -15.74086 -15.54425 -15.36580 -15.23592 -14.62768 -14.40253 -14.20966 -14.10296 -13.86836 -13.58823 -13.49606 -13.36251 -13.30465 -13.03055 -12.90528 -12.73305 -12.68440 -12.54158 -12.39321 -12.29683 -12.22645 -12.05782 -11.85513 -11.77693 -11.67178 -11.59261 -11.28888 -11.14222 -11.02177 -10.65029 -10.49935 -10.24702 -9.71070 -8.56770 -8.41884 -7.76482 -5.18667 0.37851 0.65420 1.40198 1.43311 1.49659 2.46054 2.53389 2.68369 2.86683 3.29024 3.46813 3.74138 3.80769 3.88998 3.91744 3.94295 4.00624 4.20464 4.27669 4.31068 4.36725 4.42585 4.45491 4.45568 4.48065 4.52337 4.58003 4.63262 4.65911 4.71296 4.74356 4.76812 4.77701 4.86177 4.92993 4.97364 5.05345 5.05894 5.16205 5.19552 5.30953 5.36244 5.38058 5.39077 5.46708 5.49691 5.52816 5.62796 5.67786 5.74794 5.81647 5.88501 6.49802 6.52089 6.76988 7.02830 7.26319 7.95365 8.48860 9.30418 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.007137 B = 0.006244 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3922.026028 B = 4483.172738 C = 6401.717916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.075 3.925 4 C -0.171 4.171 5 C -0.182 4.182 6 C 0.105 3.895 7 O -0.320 6.320 8 C 0.026 3.974 9 C -0.062 4.062 10 C 0.231 3.769 11 H 0.036 0.964 12 C -0.077 4.077 13 H 0.053 0.947 14 C -0.102 4.102 15 C -0.118 4.118 16 C -0.104 4.104 17 C -0.142 4.142 18 C 0.156 3.844 19 O -0.565 6.565 20 C -0.158 4.158 21 C 0.184 3.816 22 N -0.589 5.589 23 C -0.215 4.215 24 H 0.052 0.948 25 C -0.041 4.041 26 N -0.929 5.929 27 Si 0.940 3.060 28 H -0.291 1.291 29 H -0.294 1.294 30 H -0.278 1.278 31 C -0.119 4.119 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.057 0.943 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.052 0.948 47 H 0.073 0.927 48 H 0.384 0.616 49 H 0.045 0.955 50 H 0.074 0.926 51 H 0.053 0.947 52 H 0.007 0.993 53 H 0.244 0.756 54 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.499 -5.057 -12.380 14.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.031 3.969 4 C -0.189 4.189 5 C -0.201 4.201 6 C 0.059 3.941 7 O -0.233 6.233 8 C -0.069 4.069 9 C -0.063 4.063 10 C 0.126 3.874 11 H 0.053 0.947 12 C -0.098 4.098 13 H 0.072 0.928 14 C -0.140 4.140 15 C -0.155 4.155 16 C -0.141 4.141 17 C -0.180 4.180 18 C 0.116 3.884 19 O -0.372 6.372 20 C -0.197 4.197 21 C 0.059 3.941 22 N -0.311 5.311 23 C -0.346 4.346 24 H 0.069 0.931 25 C -0.236 4.236 26 N -0.576 5.576 27 Si 0.770 3.230 28 H -0.218 1.218 29 H -0.221 1.221 30 H -0.203 1.203 31 C -0.138 4.138 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.075 0.925 35 H 0.174 0.826 36 H 0.167 0.833 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.092 0.908 48 H 0.233 0.767 49 H 0.064 0.936 50 H 0.092 0.908 51 H 0.071 0.929 52 H 0.025 0.975 53 H 0.054 0.946 54 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.793 -5.202 -12.359 15.032 hybrid contribution -0.176 0.894 1.730 1.955 sum -6.969 -4.308 -10.630 13.421 Atomic orbital electron populations 1.23288 0.76862 1.05311 1.01978 1.86035 1.23137 1.26454 1.89586 1.18850 0.91849 0.84941 1.01271 1.21161 1.00821 0.90843 1.06094 1.21207 0.92529 0.99493 1.06869 1.18905 0.91280 0.85617 0.98315 1.86246 1.36068 1.12593 1.88440 1.23124 0.95894 0.86462 1.01375 1.18984 0.95744 0.90196 1.01418 1.19299 0.87622 0.93547 0.86956 0.94672 1.21505 0.93402 0.97765 0.97085 0.92834 1.21474 1.00117 0.99166 0.93219 1.21537 0.96170 0.98135 0.99703 1.21390 0.95567 1.02219 0.94950 1.22203 1.00846 0.98511 0.96433 1.20791 0.92974 0.83507 0.91167 1.86470 1.26482 1.36026 1.88238 1.22759 1.00401 0.99490 0.97085 1.20523 0.82840 0.91579 0.99203 1.44236 1.01859 1.80696 1.04344 1.19027 0.96047 1.19459 1.00052 0.93074 1.25473 0.99333 0.96748 1.02084 1.70135 1.28246 1.27237 1.32025 0.85671 0.79081 0.76330 0.81903 1.21813 1.22079 1.20345 1.20206 0.91927 0.97234 1.04441 0.91485 0.86397 0.92460 0.82643 0.83342 0.90912 0.93278 0.88288 0.91180 0.92384 0.93569 0.90630 0.91380 0.90688 0.92918 0.90824 0.76735 0.93615 0.90796 0.92879 0.97474 0.94634 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.49 16 2 O -0.34 -10.06 10.50 -93.45 -0.98 -11.04 16 3 C 0.08 2.54 6.69 22.49 0.15 2.69 16 4 C -0.17 -5.09 9.03 22.35 0.20 -4.88 16 5 C -0.18 -5.96 9.03 22.35 0.20 -5.75 16 6 C 0.10 4.18 5.68 22.49 0.13 4.31 16 7 O -0.32 -13.41 9.61 -93.44 -0.90 -14.31 16 8 C 0.03 0.80 9.81 113.37 1.11 1.91 16 9 C -0.06 -2.57 3.10 -19.78 -0.06 -2.64 16 10 C 0.23 9.91 1.54 44.24 0.07 9.97 16 11 H 0.04 1.64 4.53 -2.39 -0.01 1.63 16 12 C -0.08 -2.89 1.36 -10.68 -0.01 -2.90 16 13 H 0.05 2.21 6.38 -2.39 -0.02 2.20 16 14 C -0.10 -3.22 4.89 30.62 0.15 -3.07 16 15 C -0.12 -3.39 5.64 30.59 0.17 -3.21 16 16 C -0.10 -2.75 5.77 30.60 0.18 -2.57 16 17 C -0.14 -4.45 4.27 30.59 0.13 -4.32 16 18 C 0.16 5.30 0.72 -10.79 -0.01 5.30 16 19 O -0.56 -16.61 11.57 -148.98 -1.72 -18.33 16 20 C -0.16 -6.12 5.23 30.65 0.16 -5.96 16 21 C 0.18 8.92 4.84 86.38 0.42 9.33 16 22 N -0.59 -29.55 2.98 -679.54 -2.02 -31.58 16 23 C -0.22 -11.90 8.15 84.03 0.69 -11.22 16 24 H 0.05 2.94 6.51 -2.91 -0.02 2.92 16 25 C -0.04 -2.35 4.95 84.86 0.42 -1.93 16 26 N -0.93 -54.94 11.21 21.65 0.24 -54.69 16 27 Si 0.94 46.49 29.58 68.60 2.03 48.52 16 28 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 29 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 30 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 31 C -0.12 -4.55 7.59 22.36 0.17 -4.38 16 32 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 33 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 35 H 0.16 3.43 6.29 -2.91 -0.02 3.41 16 36 H 0.15 3.93 6.29 -2.91 -0.02 3.91 16 37 H 0.07 1.72 7.66 -2.39 -0.02 1.70 16 38 H 0.05 1.46 7.66 -2.39 -0.02 1.44 16 39 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 40 H 0.07 2.12 7.65 -2.39 -0.02 2.10 16 41 H 0.06 1.86 6.16 -2.38 -0.01 1.85 16 42 H 0.05 1.51 6.26 -2.39 -0.01 1.50 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.07 1.82 7.67 -2.38 -0.02 1.80 16 46 H 0.05 2.01 5.01 -2.39 -0.01 2.00 16 47 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.38 8.11 9.04 -74.06 -0.67 7.44 16 49 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 51 H 0.05 2.93 6.12 -2.39 -0.01 2.91 16 52 H 0.01 0.37 6.71 -2.39 -0.02 0.35 16 53 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 54 H 0.13 4.96 5.60 -2.92 -0.02 4.95 16 Total: -1.00 -70.12 391.05 2.28 -67.84 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.26 Total: 31.43 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 5.37 Total: -17.84 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -1.78 Total: -86.27 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -3.60 Total: -43.68 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -70.12 2.28 -67.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013776152.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.529 kcal (2) G-P(sol) polarization free energy of solvation -70.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds