Wall clock time and date at job start Tue Mar 31 2020 05:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00280 * 2 1 4 4 H 1.48498 * 109.46971 * 270.00175 * 3 2 1 5 5 H 1.48503 * 109.46854 * 29.99812 * 3 2 1 6 6 H 1.48495 * 109.46878 * 150.00176 * 3 2 1 7 7 C 1.37875 * 119.99615 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00603 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99914 * 180.02562 * 7 2 1 10 10 C 1.50694 * 109.46965 * 179.97438 * 9 7 2 11 11 C 1.35634 * 126.08634 * 84.60948 * 10 9 7 12 12 O 1.35717 * 126.15272 * 0.03130 * 11 10 9 13 13 N 1.36318 * 107.69029 * 180.02562 * 11 10 9 14 14 C 1.38718 * 126.00921 * 179.97438 * 13 11 10 15 15 N 1.30638 * 124.94114 * 0.26534 * 14 13 11 16 16 C 1.36027 * 108.73701 * 180.14251 * 15 14 13 17 17 C 1.39607 * 133.70172 * 179.91708 * 16 15 14 18 18 C 1.37723 * 119.73161 * 179.66366 * 17 16 15 19 19 C 1.38684 * 120.40349 * 0.04773 * 18 17 16 20 20 C 1.37979 * 120.47426 * 359.95096 * 19 18 17 21 21 C 1.38589 * 119.89400 * 0.02862 * 20 19 18 22 22 O 1.34447 * 124.94204 * 179.97438 * 14 13 11 23 23 N 1.40063 * 107.98217 * 0.23714 * 13 11 10 24 24 C 1.31591 * 108.29754 * 359.59083 * 23 13 11 25 25 C 1.48387 * 125.90136 * 180.14503 * 24 23 13 26 26 C 1.39344 * 120.11962 * 42.03726 * 25 24 23 27 27 C 1.38017 * 119.87579 * 179.67920 * 26 25 24 28 28 C 1.38321 * 120.11969 * 0.61706 * 27 26 25 29 29 C 1.38329 * 120.24827 * 359.67951 * 28 27 26 30 30 C 1.38015 * 120.11941 * 0.02562 * 29 28 27 31 31 H 0.96998 * 120.00146 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.46890 * 59.99636 * 9 7 2 33 33 H 1.09002 * 109.46668 * 299.99605 * 9 7 2 34 34 H 0.96698 * 114.00308 * 270.00408 * 12 11 10 35 35 H 1.07999 * 120.13136 * 359.66663 * 17 16 15 36 36 H 1.07992 * 119.79629 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.76073 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.05082 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.06401 * 359.97438 * 26 25 24 40 40 H 1.07994 * 119.94164 * 180.32354 * 27 26 25 41 41 H 1.08001 * 119.88328 * 179.70169 * 28 27 26 42 42 H 1.07994 * 119.94524 * 180.02562 * 29 28 27 43 43 H 1.08003 * 120.06535 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0137 -2.6150 -0.0001 11 6 4.1833 -3.4023 -1.0914 12 8 3.9319 -3.0519 -2.3783 13 7 4.6517 -4.6087 -0.6632 14 6 4.9558 -5.6975 -1.4671 15 7 4.8401 -5.7225 -2.7681 16 6 5.2225 -6.9482 -3.2173 17 6 5.3017 -7.5296 -4.4840 18 6 5.7473 -8.8263 -4.6137 19 6 6.1164 -9.5569 -3.4942 20 6 6.0431 -8.9946 -2.2363 21 6 5.5974 -7.6909 -2.0873 22 8 5.4177 -6.8788 -1.0212 23 7 4.7664 -4.5575 0.7318 24 6 4.3903 -3.3622 1.1337 25 6 4.3617 -2.8857 2.5387 26 6 5.4107 -3.1931 3.4028 27 6 5.3821 -2.7417 4.7068 28 6 4.3087 -1.9962 5.1598 29 6 3.2617 -1.6933 4.3080 30 6 3.2828 -2.1344 3.0005 31 1 -0.4850 0.8400 0.0004 32 1 3.8744 -0.6809 0.8905 33 1 3.8751 -0.6798 -0.8895 34 1 3.0296 -3.2430 -2.6689 35 1 5.0147 -6.9649 -5.3587 36 1 5.8094 -9.2770 -5.5931 37 1 6.4640 -10.5731 -3.6078 38 1 6.3327 -9.5697 -1.3691 39 1 6.2469 -3.7795 3.0516 40 1 6.1971 -2.9749 5.3759 41 1 4.2880 -1.6490 6.1823 42 1 2.4262 -1.1106 4.6668 43 1 2.4650 -1.8971 2.3361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014607915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:28 Heat of formation + Delta-G solvation = 122.694542 kcal Electronic energy + Delta-G solvation = -30789.615630 eV Core-core repulsion = 26576.194396 eV Total energy + Delta-G solvation = -4213.421234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.44211 -41.36088 -38.69963 -38.19394 -36.82598 -35.14903 -34.02396 -32.79050 -31.06565 -30.90117 -30.64822 -30.34078 -28.71056 -27.43051 -24.51113 -23.56084 -22.80873 -22.43132 -22.15103 -21.66022 -20.48465 -19.84007 -18.44160 -18.05349 -17.45268 -17.25445 -16.92785 -16.52848 -16.30456 -15.37496 -15.10354 -14.94551 -14.37583 -14.33772 -14.22622 -13.99879 -13.79149 -13.31097 -13.23780 -13.06141 -12.73617 -12.53505 -12.48420 -12.36163 -11.91598 -11.80175 -11.73204 -11.57851 -11.12230 -10.84483 -10.76612 -10.60037 -10.55005 -10.25618 -10.03863 -9.92142 -9.50485 -9.04234 -8.67999 -8.64931 -8.60631 -8.33584 -7.77387 -6.17099 -4.17644 0.29818 0.96803 1.19764 1.26820 1.68194 1.73153 2.55806 2.63351 2.94299 3.25706 3.34027 3.37635 3.42607 3.94836 4.10331 4.27328 4.31144 4.35076 4.58129 4.76244 4.88200 4.95249 5.10390 5.12590 5.17890 5.23555 5.31365 5.39005 5.50856 5.65151 5.73918 5.77040 5.85467 5.92765 5.98247 6.02931 6.07957 6.22646 6.34851 6.41038 6.56444 6.71941 6.73202 6.87555 6.87842 7.00532 7.11204 7.26580 7.30544 7.57171 7.74894 7.85256 8.37801 8.84857 9.43090 10.94749 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010401 B = 0.003108 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.473149 B = 9006.337195 C =11238.452126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.871 3.129 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.518 4.518 8 H 0.073 0.927 9 C 0.052 3.948 10 C -0.143 4.143 11 C 0.275 3.725 12 O -0.438 6.438 13 N -0.323 5.323 14 C 0.514 3.486 15 N -0.481 5.481 16 C 0.048 3.952 17 C -0.066 4.066 18 C -0.115 4.115 19 C -0.103 4.103 20 C -0.083 4.083 21 C 0.002 3.998 22 O -0.204 6.204 23 N -0.264 5.264 24 C 0.161 3.839 25 C -0.022 4.022 26 C -0.091 4.091 27 C -0.134 4.134 28 C -0.112 4.112 29 C -0.124 4.124 30 C -0.073 4.073 31 H 0.266 0.734 32 H 0.038 0.962 33 H 0.032 0.968 34 H 0.403 0.597 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.127 0.873 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.270 -13.849 -0.629 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.126 4.126 3 Si 0.697 3.303 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.556 4.556 8 H 0.091 0.909 9 C 0.013 3.987 10 C -0.153 4.153 11 C 0.117 3.883 12 O -0.240 6.240 13 N -0.120 5.120 14 C 0.215 3.785 15 N -0.218 5.218 16 C -0.065 4.065 17 C -0.085 4.085 18 C -0.134 4.134 19 C -0.121 4.121 20 C -0.102 4.102 21 C -0.049 4.049 22 O -0.094 6.094 23 N -0.085 5.085 24 C -0.007 4.007 25 C -0.024 4.024 26 C -0.110 4.110 27 C -0.152 4.152 28 C -0.130 4.130 29 C -0.142 4.142 30 C -0.092 4.092 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.262 0.738 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.883 -14.169 -0.845 18.512 hybrid contribution -0.195 0.842 0.072 0.868 sum 11.688 -13.327 -0.773 17.743 Atomic orbital electron populations 1.69885 1.06232 1.27182 1.49903 1.24917 0.94633 0.98885 0.94149 0.86904 0.80654 0.83782 0.78926 1.20034 1.21194 1.18584 1.20855 0.88023 0.94504 1.52193 0.90897 1.18286 0.97072 0.85161 0.98140 1.20486 1.05696 1.00786 0.88365 1.18470 1.00966 0.82307 0.86596 1.84807 1.36909 1.80755 1.21540 1.45047 1.54837 1.06645 1.05451 1.20629 0.92748 0.80427 0.84727 1.71020 1.26112 1.20442 1.04236 1.19757 1.02114 0.89261 0.95374 1.20310 0.99213 0.94806 0.94191 1.21042 0.99448 0.93554 0.99357 1.20978 1.00066 1.00272 0.90829 1.19871 1.01534 0.89770 0.99023 1.20203 1.05831 0.94359 0.84497 1.84510 1.68919 1.21289 1.34715 1.77954 1.27359 1.19537 0.83694 1.20819 0.95256 0.90404 0.94204 1.17726 0.96364 1.00171 0.88183 1.21157 0.97825 0.98744 0.93319 1.20948 0.98869 0.99893 0.95517 1.21242 0.94109 0.98127 0.99532 1.21159 0.98945 1.00508 0.93611 1.21897 0.98013 0.93153 0.96121 0.92448 0.94421 0.95019 0.73843 0.84363 0.84446 0.84184 0.84614 0.86053 0.86146 0.86274 0.85494 0.82244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.96 55.43 0.77 -24.69 16 2 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 7 C -0.52 -13.28 8.10 -34.44 -0.28 -13.55 16 8 H 0.07 2.05 7.98 -52.49 -0.42 1.63 16 9 C 0.05 1.17 3.64 -29.03 -0.11 1.06 16 10 C -0.14 -3.02 5.29 -104.54 -0.55 -3.57 16 11 C 0.27 5.57 7.88 -16.49 -0.13 5.44 16 12 O -0.44 -8.20 12.82 -18.86 -0.24 -8.44 16 13 N -0.32 -6.43 3.78 -13.91 -0.05 -6.48 16 14 C 0.51 9.61 8.91 -86.79 -0.77 8.84 16 15 N -0.48 -8.52 10.51 -11.91 -0.13 -8.64 16 16 C 0.05 0.72 7.23 -84.71 -0.61 0.11 16 17 C -0.07 -0.73 10.10 -39.26 -0.40 -1.13 16 18 C -0.11 -0.93 10.02 -39.60 -0.40 -1.33 16 19 C -0.10 -0.81 10.03 -39.51 -0.40 -1.21 16 20 C -0.08 -0.86 10.06 -39.55 -0.40 -1.26 16 21 C 0.00 0.03 7.42 -38.67 -0.29 -0.26 16 22 O -0.20 -3.55 10.79 2.71 0.03 -3.52 16 23 N -0.26 -5.26 12.54 33.43 0.42 -4.84 16 24 C 0.16 3.19 6.66 -82.78 -0.55 2.64 16 25 C -0.02 -0.40 5.63 -104.89 -0.59 -0.99 16 26 C -0.09 -1.39 9.78 -39.25 -0.38 -1.78 16 27 C -0.13 -1.75 10.03 -39.63 -0.40 -2.15 16 28 C -0.11 -1.45 10.04 -39.52 -0.40 -1.84 16 29 C -0.12 -1.87 10.03 -39.63 -0.40 -2.27 16 30 C -0.07 -1.31 8.46 -39.25 -0.33 -1.64 16 31 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 32 H 0.04 0.85 6.15 -51.93 -0.32 0.53 16 33 H 0.03 0.73 7.57 -51.93 -0.39 0.33 16 34 H 0.40 6.27 9.06 45.56 0.41 6.69 16 35 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.16 3.28 5.92 -52.48 -0.31 2.97 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -31.63 376.84 -9.24 -40.87 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -3.58 Total: 7.49 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -7.47 Total: -12.94 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 1.01 Total: -44.66 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.21 Total: -11.97 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.63 -9.24 -40.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014607915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.565 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds