Wall clock time and date at job start Tue Mar 31 2020 05:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00280 * 2 1 4 4 H 1.48498 * 109.46971 * 270.00175 * 3 2 1 5 5 H 1.48503 * 109.46854 * 29.99812 * 3 2 1 6 6 H 1.48495 * 109.46878 * 150.00176 * 3 2 1 7 7 C 1.37875 * 119.99615 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00603 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99914 * 180.02562 * 7 2 1 10 10 C 1.50694 * 109.46965 * 179.97438 * 9 7 2 11 11 C 1.35634 * 126.08634 * 84.60948 * 10 9 7 12 12 O 1.35717 * 126.15272 * 0.03130 * 11 10 9 13 13 N 1.36318 * 107.69029 * 180.02562 * 11 10 9 14 14 C 1.38718 * 126.00921 * 179.97438 * 13 11 10 15 15 N 1.30638 * 124.94114 * 0.26534 * 14 13 11 16 16 C 1.36027 * 108.73701 * 180.14251 * 15 14 13 17 17 C 1.39607 * 133.70172 * 179.91708 * 16 15 14 18 18 C 1.37723 * 119.73161 * 179.66366 * 17 16 15 19 19 C 1.38684 * 120.40349 * 0.04773 * 18 17 16 20 20 C 1.37979 * 120.47426 * 359.95096 * 19 18 17 21 21 C 1.38589 * 119.89400 * 0.02862 * 20 19 18 22 22 O 1.34447 * 124.94204 * 179.97438 * 14 13 11 23 23 N 1.40063 * 107.98217 * 0.23714 * 13 11 10 24 24 C 1.31591 * 108.29754 * 359.59083 * 23 13 11 25 25 C 1.48387 * 125.90136 * 180.14503 * 24 23 13 26 26 C 1.39344 * 120.11962 * 42.03726 * 25 24 23 27 27 C 1.38017 * 119.87579 * 179.67920 * 26 25 24 28 28 C 1.38321 * 120.11969 * 0.61706 * 27 26 25 29 29 C 1.38329 * 120.24827 * 359.67951 * 28 27 26 30 30 C 1.38015 * 120.11941 * 0.02562 * 29 28 27 31 31 H 0.96998 * 120.00146 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.46890 * 59.99636 * 9 7 2 33 33 H 1.09002 * 109.46668 * 299.99605 * 9 7 2 34 34 H 0.96698 * 114.00308 * 270.00408 * 12 11 10 35 35 H 1.07999 * 120.13136 * 359.66663 * 17 16 15 36 36 H 1.07992 * 119.79629 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.76073 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.05082 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.06401 * 359.97438 * 26 25 24 40 40 H 1.07994 * 119.94164 * 180.32354 * 27 26 25 41 41 H 1.08001 * 119.88328 * 179.70169 * 28 27 26 42 42 H 1.07994 * 119.94524 * 180.02562 * 29 28 27 43 43 H 1.08003 * 120.06535 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0137 -2.6150 -0.0001 11 6 4.1833 -3.4023 -1.0914 12 8 3.9319 -3.0519 -2.3783 13 7 4.6517 -4.6087 -0.6632 14 6 4.9558 -5.6975 -1.4671 15 7 4.8401 -5.7225 -2.7681 16 6 5.2225 -6.9482 -3.2173 17 6 5.3017 -7.5296 -4.4840 18 6 5.7473 -8.8263 -4.6137 19 6 6.1164 -9.5569 -3.4942 20 6 6.0431 -8.9946 -2.2363 21 6 5.5974 -7.6909 -2.0873 22 8 5.4177 -6.8788 -1.0212 23 7 4.7664 -4.5575 0.7318 24 6 4.3903 -3.3622 1.1337 25 6 4.3617 -2.8857 2.5387 26 6 5.4107 -3.1931 3.4028 27 6 5.3821 -2.7417 4.7068 28 6 4.3087 -1.9962 5.1598 29 6 3.2617 -1.6933 4.3080 30 6 3.2828 -2.1344 3.0005 31 1 -0.4850 0.8400 0.0004 32 1 3.8744 -0.6809 0.8905 33 1 3.8751 -0.6798 -0.8895 34 1 3.0296 -3.2430 -2.6689 35 1 5.0147 -6.9649 -5.3587 36 1 5.8094 -9.2770 -5.5931 37 1 6.4640 -10.5731 -3.6078 38 1 6.3327 -9.5697 -1.3691 39 1 6.2469 -3.7795 3.0516 40 1 6.1971 -2.9749 5.3759 41 1 4.2880 -1.6490 6.1823 42 1 2.4262 -1.1106 4.6668 43 1 2.4650 -1.8971 2.3361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014607915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:27 Heat of formation + Delta-G solvation = 101.047828 kcal Electronic energy + Delta-G solvation = -30790.554302 eV Core-core repulsion = 26576.194396 eV Total energy + Delta-G solvation = -4214.359906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.60179 -42.85157 -39.89789 -39.09048 -38.33708 -36.44449 -35.62416 -34.46975 -32.70133 -31.83829 -31.74105 -31.62316 -29.85242 -29.12894 -25.85917 -24.89057 -24.17608 -23.52047 -23.27425 -22.98031 -21.98266 -21.17327 -19.92391 -19.13535 -19.01591 -18.60127 -18.39924 -17.73567 -17.57088 -16.70450 -16.37439 -16.26969 -15.89490 -15.51955 -15.25486 -15.18335 -15.09851 -14.92277 -14.46789 -14.29017 -14.23569 -13.83314 -13.68582 -13.57234 -13.38391 -13.20574 -12.91046 -12.71614 -12.55141 -12.45524 -12.19780 -12.01967 -11.93880 -11.72658 -11.64267 -11.57804 -11.24569 -10.74307 -9.97279 -9.83421 -9.79661 -9.70806 -9.12025 -8.25660 -6.29640 -0.87528 -0.10338 0.03020 0.10245 0.42095 0.54427 1.31821 1.39233 1.40722 1.42575 1.45820 1.53216 2.38658 2.55670 2.57621 2.89438 3.04403 3.08778 3.25977 3.44173 3.74073 3.95533 4.02695 4.06528 4.14757 4.18264 4.19062 4.30826 4.36808 4.42275 4.52979 4.61527 4.72008 4.90265 4.91343 4.99036 5.06511 5.15355 5.23748 5.24473 5.27846 5.31105 5.39516 5.54512 5.57420 5.57768 5.66683 5.68897 5.94563 6.10524 6.27939 6.36495 6.40223 6.72788 7.33320 8.89699 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010401 B = 0.003108 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.473149 B = 9006.337195 C =11238.452126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.026 3.974 3 Si 0.931 3.069 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.246 1.246 7 C -0.506 4.506 8 H 0.032 0.968 9 C 0.067 3.933 10 C -0.173 4.173 11 C 0.278 3.722 12 O -0.442 6.442 13 N -0.326 5.326 14 C 0.476 3.524 15 N -0.487 5.487 16 C 0.006 3.994 17 C -0.074 4.074 18 C -0.097 4.097 19 C -0.075 4.075 20 C -0.094 4.094 21 C -0.021 4.021 22 O -0.219 6.219 23 N -0.274 5.274 24 C 0.159 3.841 25 C -0.047 4.047 26 C -0.095 4.095 27 C -0.121 4.121 28 C -0.097 4.097 29 C -0.130 4.130 30 C -0.098 4.098 31 H 0.267 0.733 32 H 0.041 0.959 33 H 0.030 0.970 34 H 0.414 0.586 35 H 0.149 0.851 36 H 0.183 0.817 37 H 0.190 0.810 38 H 0.157 0.843 39 H 0.128 0.872 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.139 0.861 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.084 -15.854 -0.448 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.172 4.172 3 Si 0.755 3.245 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.170 1.170 7 C -0.544 4.544 8 H 0.051 0.949 9 C 0.028 3.972 10 C -0.184 4.184 11 C 0.118 3.882 12 O -0.246 6.246 13 N -0.122 5.122 14 C 0.177 3.823 15 N -0.225 5.225 16 C -0.106 4.106 17 C -0.094 4.094 18 C -0.116 4.116 19 C -0.092 4.092 20 C -0.113 4.113 21 C -0.071 4.071 22 O -0.109 6.109 23 N -0.097 5.097 24 C -0.008 4.008 25 C -0.049 4.049 26 C -0.115 4.115 27 C -0.139 4.139 28 C -0.115 4.115 29 C -0.148 4.148 30 C -0.118 4.118 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.274 0.726 35 H 0.167 0.833 36 H 0.200 0.800 37 H 0.207 0.793 38 H 0.175 0.825 39 H 0.146 0.854 40 H 0.178 0.822 41 H 0.178 0.822 42 H 0.157 0.843 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.716 -16.220 -0.681 21.911 hybrid contribution -1.015 1.105 -0.146 1.507 sum 13.701 -15.115 -0.827 20.418 Atomic orbital electron populations 1.70018 1.07965 1.28133 1.51908 1.25668 0.95278 1.02371 0.93923 0.85931 0.79952 0.79393 0.79198 1.19591 1.20707 1.16962 1.20877 0.89659 0.92888 1.50932 0.94944 1.18013 0.94730 0.86528 0.97892 1.20381 1.07891 1.00578 0.89556 1.18496 1.00319 0.82643 0.86741 1.84750 1.37861 1.80893 1.21066 1.44971 1.54802 1.07005 1.05467 1.20581 0.95778 0.80968 0.84977 1.70895 1.25177 1.22379 1.04035 1.20244 1.04486 0.88703 0.97196 1.20724 0.99354 0.96307 0.92976 1.21633 0.96459 0.91901 1.01607 1.21660 0.96484 1.01841 0.89247 1.20419 1.01354 0.88194 1.01306 1.20907 1.06981 0.95604 0.83597 1.84447 1.69143 1.21199 1.36141 1.77866 1.28111 1.19641 0.84038 1.21123 0.94677 0.89985 0.95028 1.17838 0.97714 1.01599 0.87754 1.21336 0.97118 0.98894 0.94123 1.21407 0.99697 0.98087 0.94706 1.21673 0.92578 0.96467 1.00808 1.21370 1.00351 1.00429 0.92605 1.21645 0.97531 0.95322 0.97284 0.92346 0.94096 0.95223 0.72594 0.83281 0.79991 0.79330 0.82490 0.85403 0.82161 0.82177 0.84272 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.13 13.96 21.45 0.30 -55.84 16 2 C 0.03 1.44 5.47 84.65 0.46 1.91 16 3 Si 0.93 42.53 27.47 68.60 1.88 44.42 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 7 C -0.51 -27.68 8.10 25.60 0.21 -27.47 16 8 H 0.03 1.99 7.98 -2.91 -0.02 1.97 16 9 C 0.07 3.18 3.64 29.10 0.11 3.29 16 10 C -0.17 -7.87 5.29 -19.81 -0.10 -7.97 16 11 C 0.28 12.13 7.88 83.39 0.66 12.79 16 12 O -0.44 -17.75 12.82 -90.38 -1.16 -18.91 16 13 N -0.33 -14.00 3.78 -418.65 -1.58 -15.58 16 14 C 0.48 19.06 8.91 179.01 1.59 20.66 16 15 N -0.49 -18.26 10.51 -305.94 -3.22 -21.47 16 16 C 0.01 0.18 7.23 39.33 0.28 0.47 16 17 C -0.07 -1.52 10.10 22.48 0.23 -1.29 16 18 C -0.10 -1.14 10.02 22.25 0.22 -0.92 16 19 C -0.07 -0.81 10.03 22.31 0.22 -0.58 16 20 C -0.09 -1.73 10.06 22.29 0.22 -1.50 16 21 C -0.02 -0.62 7.42 22.86 0.17 -0.45 16 22 O -0.22 -8.07 10.79 -13.21 -0.14 -8.21 16 23 N -0.27 -11.71 12.54 -48.15 -0.60 -12.32 16 24 C 0.16 6.76 6.66 42.54 0.28 7.05 16 25 C -0.05 -1.76 5.63 -20.04 -0.11 -1.87 16 26 C -0.10 -2.86 9.78 22.48 0.22 -2.64 16 27 C -0.12 -2.79 10.03 22.24 0.22 -2.57 16 28 C -0.10 -2.22 10.04 22.31 0.22 -1.99 16 29 C -0.13 -3.84 10.03 22.24 0.22 -3.62 16 30 C -0.10 -3.72 8.46 22.48 0.19 -3.53 16 31 H 0.27 14.98 8.31 -92.71 -0.77 14.20 16 32 H 0.04 1.91 6.15 -2.39 -0.01 1.90 16 33 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 34 H 0.41 14.14 9.06 -74.06 -0.67 13.47 16 35 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 37 H 0.19 0.33 8.06 -2.91 -0.02 0.30 16 38 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 40 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 41 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 43 H 0.12 5.49 5.92 -2.91 -0.02 5.47 16 Total: -1.00 -76.72 376.84 1.37 -75.36 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.36 Total: 22.80 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 5.53 Total: -10.26 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -5.10 Total: -105.20 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -1.30 Total: -27.12 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.88 Total: 44.42 kcal Total: -76.72 1.37 -75.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014607915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.403 kcal (2) G-P(sol) polarization free energy of solvation -76.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds