Wall clock time and date at job start Tue Mar 31 2020 05:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.53373 * 2 1 4 4 C 1.51582 * 110.60067 * 122.83526 * 2 1 3 5 5 O 1.21233 * 127.15057 * 298.64552 * 4 2 1 6 6 N 1.34767 * 105.68720 * 118.67666 * 4 2 1 7 7 C 1.46503 * 124.17546 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.46670 * 90.00836 * 7 6 4 9 9 H 1.08998 * 109.47711 * 54.99950 * 8 7 6 10 10 C 1.47204 * 109.47142 * 294.99270 * 8 7 6 11 11 N 4.63237 * 77.72370 * 134.20520 * 2 1 3 12 12 C 1.53004 * 109.47070 * 175.00138 * 8 7 6 13 13 C 1.50701 * 109.47211 * 185.00010 * 12 8 7 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 8 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 8 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 C 1.33791 * 111.64110 * 0.23426 * 6 4 2 22 22 O 1.21548 * 123.76794 * 179.77152 * 21 6 4 23 23 N 1.34524 * 112.46226 * 359.59231 * 21 6 4 24 24 C 1.39983 * 126.69326 * 180.13300 * 23 21 6 25 25 C 1.38854 * 120.05716 * 180.02562 * 24 23 21 26 26 C 1.38123 * 119.94204 * 179.76142 * 25 24 23 27 27 C 1.38386 * 120.05222 * 0.48377 * 26 25 24 28 28 Cl 1.73601 * 119.93700 * 179.74246 * 27 26 25 29 29 C 1.38380 * 120.11792 * 359.76861 * 27 26 25 30 30 C 1.38116 * 120.05490 * 359.97438 * 29 27 26 31 31 H 1.09000 * 109.47097 * 298.62119 * 1 2 3 32 32 H 1.09003 * 109.47191 * 58.62397 * 1 2 3 33 33 H 1.09008 * 109.47044 * 178.61983 * 1 2 3 34 34 H 1.08999 * 109.47377 * 330.00406 * 7 6 4 35 35 H 1.09000 * 109.46979 * 210.00488 * 7 6 4 36 36 H 1.09000 * 109.47211 * 64.99037 * 12 8 7 37 37 H 1.09007 * 109.46376 * 304.99579 * 12 8 7 38 38 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 39 39 H 1.07992 * 120.03032 * 359.97438 * 25 24 23 40 40 H 1.07999 * 119.97376 * 180.20882 * 26 25 24 41 41 H 1.07998 * 119.96968 * 179.97438 * 29 27 26 42 42 H 1.07995 * 120.02672 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9123 1.0207 0.0000 4 6 2.0633 -0.7694 1.1922 5 8 1.8873 -0.5168 2.3648 6 7 2.7743 -1.7920 0.6775 7 6 3.4723 -2.7968 1.4834 8 6 2.5308 -3.9699 1.7631 9 1 2.1457 -4.3595 0.8208 10 6 1.4096 -3.5106 2.5991 11 7 0.5450 -3.1560 3.2448 12 6 3.2952 -5.0736 2.4969 13 6 2.4033 -6.2768 2.6637 14 1 1.3923 -6.2562 2.2846 15 6 2.8761 -7.4016 3.3057 16 7 4.1072 -7.4266 3.7676 17 14 1.7681 -8.8902 3.5193 18 1 0.4404 -8.6097 2.9161 19 1 2.3802 -10.0638 2.8459 20 1 1.6025 -9.1806 4.9662 21 6 2.7686 -1.7729 -0.6603 22 8 3.3443 -2.5915 -1.3501 23 7 2.0514 -0.7487 -1.1566 24 6 1.8455 -0.4494 -2.5085 25 6 1.0764 0.6492 -2.8682 26 6 0.8788 0.9453 -4.2028 27 6 1.4385 0.1422 -5.1810 28 17 1.1828 0.5132 -6.8575 29 6 2.2012 -0.9563 -4.8252 30 6 2.4061 -1.2536 -3.4920 31 1 -0.3633 0.4923 0.9021 32 1 -0.3634 0.5351 -0.8774 33 1 -0.3633 -1.0274 -0.0248 34 1 3.7877 -2.3510 2.4267 35 1 4.3471 -3.1545 0.9402 36 1 3.6041 -4.7114 3.4775 37 1 4.1762 -5.3517 1.9182 38 1 4.4397 -8.2178 4.2195 39 1 0.6358 1.2737 -2.1052 40 1 0.2835 1.8016 -4.4832 41 1 2.6365 -1.5816 -5.5905 42 1 3.0017 -2.1107 -3.2148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015238701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:30 Heat of formation + Delta-G solvation = -7.659565 kcal Electronic energy + Delta-G solvation = -29436.532506 eV Core-core repulsion = 25215.025844 eV Total energy + Delta-G solvation = -4221.506662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.098 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.90571 -40.63084 -39.70388 -38.64696 -37.76869 -37.31029 -36.46234 -35.50716 -33.76829 -32.77163 -31.94787 -30.61670 -28.97717 -26.52066 -25.63358 -24.23769 -24.14542 -23.74639 -22.51014 -21.35021 -19.32675 -18.91790 -18.53108 -18.13876 -17.84481 -17.61681 -17.08539 -16.98397 -16.51657 -15.90799 -15.79495 -15.69104 -15.22948 -15.13038 -14.99970 -14.64209 -14.58390 -14.37401 -14.16315 -13.97785 -13.77263 -13.52540 -13.25871 -13.17817 -13.02690 -12.98046 -12.72886 -12.70778 -12.67383 -12.52304 -12.19401 -12.05952 -11.76152 -11.46662 -11.41578 -11.26282 -11.22349 -10.86838 -10.59133 -10.08504 -9.03956 -8.23503 -6.31860 -0.05422 0.27070 0.52471 0.71302 1.23078 1.36823 1.39722 1.49775 1.62790 1.70676 1.85978 1.91040 2.38578 2.65077 2.70945 3.02950 3.13380 3.35231 3.67626 3.84408 3.85127 3.85956 3.96603 4.00466 4.15335 4.21363 4.31548 4.38266 4.55655 4.60826 4.63001 4.73306 4.76000 4.86620 5.03355 5.07996 5.26435 5.30576 5.32513 5.38810 5.52137 5.72703 5.76771 5.93847 6.12321 6.17423 6.64895 6.76389 6.80520 7.36611 8.87537 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.002407 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.873156 B =11627.814721 C =12737.488917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.096 3.904 3 H 0.175 0.825 4 C 0.516 3.484 5 O -0.477 6.477 6 N -0.577 5.577 7 C 0.130 3.870 8 C 0.005 3.995 9 H 0.112 0.888 10 C 0.237 3.763 11 N -0.479 5.479 12 C 0.041 3.959 13 C -0.540 4.540 14 H 0.050 0.950 15 C 0.014 3.986 16 N -0.919 5.919 17 Si 0.948 3.052 18 H -0.272 1.272 19 H -0.272 1.272 20 H -0.283 1.283 21 C 0.700 3.300 22 O -0.540 6.540 23 N -0.556 5.556 24 C 0.184 3.816 25 C -0.136 4.136 26 C -0.073 4.073 27 C -0.068 4.068 28 Cl -0.072 7.072 29 C -0.081 4.081 30 C -0.157 4.157 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.048 0.952 34 H 0.109 0.891 35 H 0.134 0.866 36 H 0.011 0.989 37 H 0.043 0.957 38 H 0.265 0.735 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.145 0.855 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.216 22.201 -19.135 29.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 H 0.192 0.808 4 C 0.304 3.696 5 O -0.346 6.346 6 N -0.321 5.321 7 C 0.009 3.991 8 C -0.018 4.018 9 H 0.130 0.870 10 C -0.080 4.080 11 N -0.156 5.156 12 C 0.003 3.997 13 C -0.578 4.578 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.559 5.559 17 Si 0.774 3.226 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.209 1.209 21 C 0.403 3.597 22 O -0.414 6.414 23 N -0.283 5.283 24 C 0.091 3.909 25 C -0.156 4.156 26 C -0.092 4.092 27 C -0.095 4.095 28 Cl -0.043 7.043 29 C -0.100 4.100 30 C -0.177 4.177 31 H 0.115 0.885 32 H 0.134 0.866 33 H 0.067 0.933 34 H 0.127 0.873 35 H 0.152 0.848 36 H 0.030 0.970 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.187 0.813 40 H 0.183 0.817 41 H 0.163 0.837 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.174 22.311 -17.918 29.079 hybrid contribution 0.111 -1.659 0.259 1.682 sum -5.063 20.652 -17.659 27.640 Atomic orbital electron populations 1.22144 0.88688 1.03808 1.06510 1.22541 0.99137 0.99115 0.80107 0.80802 1.21378 0.77002 0.80662 0.90567 1.90870 1.56556 1.69383 1.17780 1.46616 1.49342 1.28689 1.07487 1.21905 0.94728 0.85766 0.96720 1.19500 0.89004 0.96316 0.96977 0.87031 1.29386 0.93971 0.91378 0.93255 1.81001 1.12646 1.11292 1.10643 1.18967 0.95284 0.90298 0.95178 1.21469 0.99138 0.99788 1.37434 0.93129 1.25674 0.96317 1.01381 0.95162 1.70017 1.16568 1.30279 1.39024 0.85642 0.79243 0.79918 0.77768 1.19624 1.19705 1.20877 1.15907 0.80066 0.82082 0.81669 1.90922 1.48215 1.41608 1.60641 1.45057 1.50294 1.27778 1.05208 1.17652 0.98012 0.96267 0.78946 1.21051 1.00518 0.96807 0.97269 1.21141 0.98288 0.99355 0.90424 1.21064 1.03706 0.98970 0.85810 1.98375 1.95713 1.94188 1.16003 1.21033 0.97115 0.96040 0.95825 1.21417 1.02869 1.01688 0.91762 0.88534 0.86630 0.93303 0.87316 0.84824 0.97042 0.93903 0.92547 0.81273 0.81680 0.83695 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.25 71.98 0.67 -1.23 16 2 C 0.10 1.44 3.35 44.37 0.15 1.58 16 3 H 0.18 1.26 8.14 -2.39 -0.02 1.24 16 4 C 0.52 12.61 6.93 87.94 0.61 13.22 16 5 O -0.48 -14.76 17.08 -2.89 -0.05 -14.80 16 6 N -0.58 -15.10 2.49 -773.12 -1.92 -17.02 16 7 C 0.13 3.78 5.13 86.38 0.44 4.22 16 8 C 0.00 0.17 2.42 -12.60 -0.03 0.14 16 9 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 10 C 0.24 9.81 12.37 89.44 1.11 10.92 16 11 N -0.48 -21.36 18.54 20.01 0.37 -20.98 16 12 C 0.04 1.91 4.42 29.85 0.13 2.04 16 13 C -0.54 -28.81 8.60 25.60 0.22 -28.59 16 14 H 0.05 2.70 7.59 -2.91 -0.02 2.68 16 15 C 0.01 0.77 5.46 84.65 0.46 1.24 16 16 N -0.92 -52.48 13.29 21.45 0.28 -52.20 16 17 Si 0.95 43.69 29.54 68.60 2.03 45.71 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 21 C 0.70 17.86 8.23 179.44 1.48 19.33 16 22 O -0.54 -16.49 14.44 -3.87 -0.06 -16.55 16 23 N -0.56 -10.46 2.95 -627.46 -1.85 -12.31 16 24 C 0.18 3.10 6.55 38.14 0.25 3.35 16 25 C -0.14 -1.39 8.82 22.39 0.20 -1.19 16 26 C -0.07 -0.74 9.82 22.28 0.22 -0.52 16 27 C -0.07 -0.95 6.32 22.34 0.14 -0.81 16 28 Cl -0.07 -0.98 28.95 -2.72 -0.08 -1.05 16 29 C -0.08 -1.32 9.82 22.27 0.22 -1.10 16 30 C -0.16 -3.09 9.36 22.39 0.21 -2.88 16 31 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.12 0.68 5.61 -2.39 -0.01 0.66 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.11 3.05 8.00 -2.39 -0.02 3.03 16 35 H 0.13 3.48 7.85 -2.39 -0.02 3.46 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 39 H 0.17 0.64 5.63 -2.91 -0.02 0.63 16 40 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 42 H 0.14 3.49 5.41 -2.91 -0.02 3.47 16 Total: -1.00 -70.87 378.84 6.27 -64.60 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.08 Total: 4.87 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 6.47 Total: 19.73 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -3.12 Total: -102.51 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.11 Total: -31.35 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.05 kcal Total: -70.87 6.27 -64.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015238701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.945 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds