Wall clock time and date at job start Tue Mar 31 2020 05:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.53679 * 2 1 4 4 C 1.51582 * 110.59660 * 237.00644 * 2 1 3 5 5 O 1.21239 * 127.15758 * 61.51385 * 4 2 1 6 6 N 1.34766 * 105.68840 * 241.47563 * 4 2 1 7 7 C 1.46499 * 124.18384 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47246 * 89.99247 * 7 6 4 9 9 H 1.08998 * 109.47024 * 55.00925 * 8 7 6 10 10 C 1.47196 * 109.47175 * 295.00392 * 8 7 6 11 11 N 4.63135 * 135.48590 * 266.62561 * 2 1 3 12 12 C 1.53004 * 109.46971 * 175.00120 * 8 7 6 13 13 C 1.50696 * 109.47375 * 185.00029 * 12 8 7 14 14 H 1.08006 * 119.99688 * 0.02562 * 13 12 8 15 15 C 1.37873 * 120.00418 * 180.02562 * 13 12 8 16 16 N 1.31515 * 119.99802 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00230 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46762 * 90.00237 * 17 15 13 19 19 H 1.48496 * 109.47019 * 209.99954 * 17 15 13 20 20 H 1.48493 * 109.47047 * 329.99996 * 17 15 13 21 21 C 1.33798 * 111.63987 * 359.76433 * 6 4 2 22 22 O 1.21543 * 123.77205 * 180.25162 * 21 6 4 23 23 N 1.34522 * 112.45932 * 0.41209 * 21 6 4 24 24 C 1.39985 * 126.69230 * 179.86742 * 23 21 6 25 25 C 1.38867 * 120.05822 * 179.97438 * 24 23 21 26 26 C 1.38105 * 119.94199 * 180.25797 * 25 24 23 27 27 C 1.38390 * 120.05652 * 359.48678 * 26 25 24 28 28 Cl 1.73598 * 119.94281 * 180.25590 * 27 26 25 29 29 C 1.38381 * 120.11080 * 0.28255 * 27 26 25 30 30 C 1.38109 * 120.06085 * 359.97148 * 29 27 26 31 31 H 1.09000 * 109.46882 * 297.16765 * 1 2 3 32 32 H 1.09000 * 109.47076 * 57.16281 * 1 2 3 33 33 H 1.08997 * 109.46924 * 177.16303 * 1 2 3 34 34 H 1.08997 * 109.47130 * 210.00166 * 7 6 4 35 35 H 1.09009 * 109.46213 * 329.99502 * 7 6 4 36 36 H 1.08997 * 109.47180 * 305.00845 * 12 8 7 37 37 H 1.08999 * 109.46789 * 65.00304 * 12 8 7 38 38 H 0.97003 * 119.99994 * 180.02562 * 16 15 13 39 39 H 1.07998 * 120.02619 * 359.97438 * 25 24 23 40 40 H 1.08002 * 119.97432 * 179.77197 * 26 25 24 41 41 H 1.08008 * 119.96559 * 179.97438 * 29 27 26 42 42 H 1.07998 * 120.02820 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0633 -0.7727 -1.1901 5 8 1.8895 -0.5219 -2.3635 6 7 2.7715 -1.7959 -0.6726 7 6 3.4684 -2.8037 -1.4756 8 6 4.8972 -2.3338 -1.7559 9 1 5.3966 -2.1074 -0.8138 10 6 4.8604 -1.1248 -2.5947 11 7 4.8326 -0.1911 -3.2413 12 6 5.6633 -3.4384 -2.4865 13 6 7.1029 -3.0253 -2.6537 14 1 7.4380 -2.0705 -2.2761 15 6 7.9922 -3.8662 -3.2886 16 7 7.5840 -5.0286 -3.7487 17 14 9.7767 -3.3543 -3.4951 18 1 10.5626 -3.8147 -2.3222 19 1 10.3273 -3.9665 -4.7310 20 1 9.8589 -1.8751 -3.5964 21 6 2.7641 -1.7743 0.6651 22 8 3.3374 -2.5926 1.3572 23 7 2.0484 -0.7477 1.1586 24 6 1.8414 -0.4454 2.5097 25 6 1.0739 0.6555 2.8664 26 6 0.8757 0.9546 4.2001 27 6 1.4323 0.1521 5.1806 28 17 1.1757 0.5270 6.8560 29 6 2.1935 -0.9483 4.8277 30 6 2.3991 -1.2488 3.4954 31 1 -0.3633 0.4692 0.9143 32 1 -0.3633 0.5573 -0.8635 33 1 -0.3633 -1.0264 -0.0509 34 1 3.4965 -3.7470 -0.9302 35 1 2.9407 -2.9450 -2.4189 36 1 5.6146 -4.3595 -1.9058 37 1 5.2164 -3.6031 -3.4669 38 1 8.2097 -5.6204 -4.1951 39 1 0.6363 1.2799 2.1016 40 1 0.2819 1.8129 4.4781 41 1 2.6271 -1.5728 5.5948 42 1 2.9936 -2.1075 3.2206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015238702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:35 Heat of formation + Delta-G solvation = 9.282742 kcal Electronic energy + Delta-G solvation = -29364.295781 eV Core-core repulsion = 25143.523793 eV Total energy + Delta-G solvation = -4220.771988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.96719 -39.85958 -38.74391 -37.39538 -36.73678 -36.50382 -35.23274 -33.75143 -32.25034 -31.94773 -31.24639 -29.74140 -27.50551 -25.35030 -24.50354 -23.53432 -23.18086 -21.96366 -21.73119 -20.43841 -18.46346 -17.61122 -17.38869 -17.22603 -16.56393 -16.27687 -16.14503 -15.80337 -15.13989 -15.00347 -14.75569 -14.54115 -14.51752 -14.05377 -13.93075 -13.76651 -13.45912 -13.22578 -13.05675 -12.64254 -12.63021 -12.40840 -12.18992 -12.06432 -11.98799 -11.84922 -11.61196 -11.31091 -11.17151 -10.93767 -10.84297 -10.61786 -10.54811 -10.43534 -10.26781 -10.06478 -9.59299 -9.48110 -9.27837 -8.50260 -8.33755 -6.14597 -4.18184 0.65700 0.87539 1.44714 1.60827 1.86292 2.50781 2.69572 3.27052 3.30812 3.33896 3.38273 3.51222 3.54043 3.58276 4.07317 4.31177 4.36884 4.40465 4.45601 4.58028 4.66190 4.81963 4.92042 5.05902 5.11432 5.17290 5.22262 5.24190 5.29469 5.39507 5.47080 5.55479 5.64402 5.71308 5.89307 5.97641 6.07345 6.17163 6.32179 6.48528 6.83269 7.13731 7.32158 7.40723 7.73681 7.79576 8.14845 8.32540 8.85026 9.47551 10.96229 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.002409 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.329779 B =11621.382484 C =12926.670151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.085 3.915 3 H 0.133 0.867 4 C 0.522 3.478 5 O -0.442 6.442 6 N -0.573 5.573 7 C 0.123 3.877 8 C -0.007 4.007 9 H 0.108 0.892 10 C 0.228 3.772 11 N -0.452 5.452 12 C 0.035 3.965 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.704 3.296 22 O -0.512 6.512 23 N -0.565 5.565 24 C 0.202 3.798 25 C -0.151 4.151 26 C -0.079 4.079 27 C -0.063 4.063 28 Cl -0.074 7.074 29 C -0.075 4.075 30 C -0.140 4.140 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.044 0.956 37 H 0.030 0.970 38 H 0.264 0.736 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.671 9.250 17.655 27.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.021 4.021 3 H 0.150 0.850 4 C 0.308 3.692 5 O -0.309 6.309 6 N -0.318 5.318 7 C 0.003 3.997 8 C -0.030 4.030 9 H 0.126 0.874 10 C -0.089 4.089 11 N -0.128 5.128 12 C -0.003 4.003 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.407 3.593 22 O -0.384 6.384 23 N -0.292 5.292 24 C 0.108 3.892 25 C -0.172 4.172 26 C -0.098 4.098 27 C -0.091 4.091 28 Cl -0.045 7.045 29 C -0.094 4.094 30 C -0.160 4.160 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.122 0.878 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.419 10.151 16.394 26.666 hybrid contribution 1.174 -0.044 0.131 1.182 sum -17.245 10.107 16.525 25.935 Atomic orbital electron populations 1.22091 0.89991 1.04523 1.04755 1.22332 0.98347 0.98562 0.82888 0.84996 1.20676 0.77849 0.80779 0.89902 1.90889 1.55906 1.68078 1.16004 1.46629 1.48917 1.29051 1.07189 1.22112 0.91636 0.90118 0.95863 1.19630 0.95266 0.90153 0.97949 0.87434 1.29018 0.92392 0.93837 0.93681 1.81027 1.09175 1.12684 1.09936 1.19163 0.94373 0.91089 0.95707 1.21055 0.93555 1.03637 1.38316 0.92537 1.24934 0.98984 0.94846 0.95084 1.69929 1.35329 1.09234 1.38295 0.86566 0.84764 0.78883 0.77742 1.20368 1.21071 1.19898 1.15800 0.79667 0.81789 0.82066 1.90930 1.46731 1.40654 1.60092 1.45060 1.51358 1.28340 1.04463 1.17460 0.96748 0.95176 0.79803 1.20763 1.02159 0.97803 0.96490 1.20793 0.99040 0.99093 0.90874 1.20908 1.03891 0.98959 0.85327 1.98371 1.95750 1.94205 1.16175 1.20981 0.96699 0.95506 0.96255 1.21543 1.01920 1.01830 0.90748 0.89768 0.89142 0.91001 0.86260 0.87766 0.93779 0.95161 0.92676 0.84325 0.84375 0.84231 0.81675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.28 37.16 0.34 -0.60 16 2 C 0.09 0.75 3.35 -68.20 -0.23 0.53 16 3 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.52 6.67 6.93 -10.56 -0.07 6.60 16 5 O -0.44 -6.97 17.08 5.59 0.10 -6.87 16 6 N -0.57 -7.63 2.49 -120.73 -0.30 -7.93 16 7 C 0.12 1.78 5.13 -4.04 -0.02 1.76 16 8 C -0.01 -0.14 2.42 -93.41 -0.23 -0.36 16 9 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 10 C 0.23 4.70 12.37 -20.76 -0.26 4.45 16 11 N -0.45 -10.09 18.54 42.16 0.78 -9.31 16 12 C 0.04 0.80 4.42 -27.88 -0.12 0.67 16 13 C -0.53 -13.92 8.60 -34.44 -0.30 -14.21 16 14 H 0.06 1.50 7.59 -52.48 -0.40 1.10 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.70 9.16 8.23 -88.02 -0.72 8.44 16 22 O -0.51 -7.71 14.45 5.33 0.08 -7.63 16 23 N -0.56 -5.82 2.95 -112.24 -0.33 -6.16 16 24 C 0.20 1.91 6.55 -83.67 -0.55 1.36 16 25 C -0.15 -1.07 8.73 -39.40 -0.34 -1.41 16 26 C -0.08 -0.54 9.82 -39.57 -0.39 -0.93 16 27 C -0.06 -0.51 6.32 -39.47 -0.25 -0.76 16 28 Cl -0.07 -0.58 28.95 -51.86 -1.50 -2.08 16 29 C -0.08 -0.65 9.82 -39.58 -0.39 -1.04 16 30 C -0.14 -1.41 9.36 -39.40 -0.37 -1.78 16 31 H 0.08 0.36 5.53 -51.93 -0.29 0.08 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.12 1.55 7.87 -51.93 -0.41 1.14 16 35 H 0.10 1.45 8.00 -51.92 -0.42 1.04 16 36 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.14 0.66 5.70 -52.49 -0.30 0.36 16 40 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 42 H 0.17 1.93 5.41 -52.49 -0.28 1.65 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -32.29 378.79 -8.35 -40.65 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -4.61 Total: -2.58 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -3.99 Total: 4.36 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.89 Total: -47.79 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.17 Total: -14.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.29 -8.35 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015238702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.931 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds