Wall clock time and date at job start Tue Mar 31 2020 05:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.53679 * 2 1 4 4 C 1.51582 * 110.59660 * 237.00644 * 2 1 3 5 5 O 1.21239 * 127.15758 * 61.51385 * 4 2 1 6 6 N 1.34766 * 105.68840 * 241.47563 * 4 2 1 7 7 C 1.46499 * 124.18384 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47246 * 89.99247 * 7 6 4 9 9 H 1.08998 * 109.47024 * 55.00925 * 8 7 6 10 10 C 1.47196 * 109.47175 * 295.00392 * 8 7 6 11 11 N 4.63135 * 135.48590 * 266.62561 * 2 1 3 12 12 C 1.53004 * 109.46971 * 175.00120 * 8 7 6 13 13 C 1.50696 * 109.47375 * 185.00029 * 12 8 7 14 14 H 1.08006 * 119.99688 * 0.02562 * 13 12 8 15 15 C 1.37873 * 120.00418 * 180.02562 * 13 12 8 16 16 N 1.31515 * 119.99802 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00230 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46762 * 90.00237 * 17 15 13 19 19 H 1.48496 * 109.47019 * 209.99954 * 17 15 13 20 20 H 1.48493 * 109.47047 * 329.99996 * 17 15 13 21 21 C 1.33798 * 111.63987 * 359.76433 * 6 4 2 22 22 O 1.21543 * 123.77205 * 180.25162 * 21 6 4 23 23 N 1.34522 * 112.45932 * 0.41209 * 21 6 4 24 24 C 1.39985 * 126.69230 * 179.86742 * 23 21 6 25 25 C 1.38867 * 120.05822 * 179.97438 * 24 23 21 26 26 C 1.38105 * 119.94199 * 180.25797 * 25 24 23 27 27 C 1.38390 * 120.05652 * 359.48678 * 26 25 24 28 28 Cl 1.73598 * 119.94281 * 180.25590 * 27 26 25 29 29 C 1.38381 * 120.11080 * 0.28255 * 27 26 25 30 30 C 1.38109 * 120.06085 * 359.97148 * 29 27 26 31 31 H 1.09000 * 109.46882 * 297.16765 * 1 2 3 32 32 H 1.09000 * 109.47076 * 57.16281 * 1 2 3 33 33 H 1.08997 * 109.46924 * 177.16303 * 1 2 3 34 34 H 1.08997 * 109.47130 * 210.00166 * 7 6 4 35 35 H 1.09009 * 109.46213 * 329.99502 * 7 6 4 36 36 H 1.08997 * 109.47180 * 305.00845 * 12 8 7 37 37 H 1.08999 * 109.46789 * 65.00304 * 12 8 7 38 38 H 0.97003 * 119.99994 * 180.02562 * 16 15 13 39 39 H 1.07998 * 120.02619 * 359.97438 * 25 24 23 40 40 H 1.08002 * 119.97432 * 179.77197 * 26 25 24 41 41 H 1.08008 * 119.96559 * 179.97438 * 29 27 26 42 42 H 1.07998 * 120.02820 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0633 -0.7727 -1.1901 5 8 1.8895 -0.5219 -2.3635 6 7 2.7715 -1.7959 -0.6726 7 6 3.4684 -2.8037 -1.4756 8 6 4.8972 -2.3338 -1.7559 9 1 5.3966 -2.1074 -0.8138 10 6 4.8604 -1.1248 -2.5947 11 7 4.8326 -0.1911 -3.2413 12 6 5.6633 -3.4384 -2.4865 13 6 7.1029 -3.0253 -2.6537 14 1 7.4380 -2.0705 -2.2761 15 6 7.9922 -3.8662 -3.2886 16 7 7.5840 -5.0286 -3.7487 17 14 9.7767 -3.3543 -3.4951 18 1 10.5626 -3.8147 -2.3222 19 1 10.3273 -3.9665 -4.7310 20 1 9.8589 -1.8751 -3.5964 21 6 2.7641 -1.7743 0.6651 22 8 3.3374 -2.5926 1.3572 23 7 2.0484 -0.7477 1.1586 24 6 1.8414 -0.4454 2.5097 25 6 1.0739 0.6555 2.8664 26 6 0.8757 0.9546 4.2001 27 6 1.4323 0.1521 5.1806 28 17 1.1757 0.5270 6.8560 29 6 2.1935 -0.9483 4.8277 30 6 2.3991 -1.2488 3.4954 31 1 -0.3633 0.4692 0.9143 32 1 -0.3633 0.5573 -0.8635 33 1 -0.3633 -1.0264 -0.0509 34 1 3.4965 -3.7470 -0.9302 35 1 2.9407 -2.9450 -2.4189 36 1 5.6146 -4.3595 -1.9058 37 1 5.2164 -3.6031 -3.4669 38 1 8.2097 -5.6204 -4.1951 39 1 0.6363 1.2799 2.1016 40 1 0.2819 1.8129 4.4781 41 1 2.6271 -1.5728 5.5948 42 1 2.9936 -2.1075 3.2206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015238702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:34 Heat of formation + Delta-G solvation = -7.633758 kcal Electronic energy + Delta-G solvation = -29365.029335 eV Core-core repulsion = 25143.523793 eV Total energy + Delta-G solvation = -4221.505543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.098 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.90815 -40.63539 -39.70657 -38.65486 -37.76833 -37.31319 -36.46315 -35.50744 -33.76828 -32.75613 -31.94594 -30.61120 -28.97624 -26.53948 -25.60071 -24.22710 -24.14796 -23.73124 -22.52497 -21.35755 -19.32625 -18.82257 -18.52163 -18.39181 -17.93062 -17.30660 -17.08673 -17.00699 -16.54229 -15.92418 -15.76466 -15.69784 -15.29775 -15.21005 -14.91437 -14.62756 -14.59581 -14.36994 -14.15044 -13.97053 -13.74534 -13.53721 -13.26704 -13.15160 -13.01910 -12.93625 -12.73391 -12.70311 -12.66494 -12.52934 -12.19300 -12.05572 -11.76046 -11.46627 -11.43213 -11.26672 -11.21941 -10.87226 -10.58250 -10.08936 -9.04230 -8.23228 -6.31650 -0.05847 0.26666 0.52479 0.71380 1.22805 1.38214 1.39783 1.48757 1.62362 1.69891 1.85175 1.90117 2.38800 2.64708 2.71095 3.02486 3.13531 3.35413 3.69939 3.82382 3.84790 3.87799 3.96232 4.00259 4.15256 4.21521 4.33174 4.38185 4.58073 4.63623 4.66281 4.73953 4.76058 4.87794 5.04285 5.10746 5.26147 5.30465 5.32146 5.38825 5.52289 5.72705 5.76427 5.93485 6.12406 6.17162 6.64257 6.76192 6.80437 7.36731 8.87593 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.002409 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.329779 B =11621.382484 C =12926.670151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.093 3.907 3 H 0.157 0.843 4 C 0.517 3.483 5 O -0.477 6.477 6 N -0.577 5.577 7 C 0.131 3.869 8 C 0.004 3.996 9 H 0.113 0.887 10 C 0.238 3.762 11 N -0.481 5.481 12 C 0.042 3.958 13 C -0.542 4.542 14 H 0.050 0.950 15 C 0.014 3.986 16 N -0.919 5.919 17 Si 0.949 3.051 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.277 1.277 21 C 0.700 3.300 22 O -0.540 6.540 23 N -0.556 5.556 24 C 0.184 3.816 25 C -0.137 4.137 26 C -0.073 4.073 27 C -0.068 4.068 28 Cl -0.071 7.071 29 C -0.081 4.081 30 C -0.157 4.157 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.043 0.957 37 H 0.011 0.989 38 H 0.266 0.734 39 H 0.169 0.831 40 H 0.166 0.834 41 H 0.146 0.854 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.061 11.148 19.100 29.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 H 0.175 0.825 4 C 0.305 3.695 5 O -0.346 6.346 6 N -0.321 5.321 7 C 0.009 3.991 8 C -0.018 4.018 9 H 0.131 0.869 10 C -0.079 4.079 11 N -0.158 5.158 12 C 0.003 3.997 13 C -0.580 4.580 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.559 5.559 17 Si 0.774 3.226 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.202 1.202 21 C 0.403 3.597 22 O -0.414 6.414 23 N -0.284 5.284 24 C 0.091 3.909 25 C -0.157 4.157 26 C -0.092 4.092 27 C -0.095 4.095 28 Cl -0.043 7.043 29 C -0.100 4.100 30 C -0.177 4.177 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.152 0.848 35 H 0.127 0.873 36 H 0.061 0.939 37 H 0.030 0.970 38 H 0.075 0.925 39 H 0.187 0.813 40 H 0.183 0.817 41 H 0.163 0.837 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.832 12.076 17.878 29.305 hybrid contribution 1.576 -0.611 -0.235 1.707 sum -18.256 11.465 17.643 27.857 Atomic orbital electron populations 1.22144 0.87351 1.04677 1.06553 1.22543 1.00125 0.98434 0.80140 0.82537 1.21352 0.77126 0.80546 0.90511 1.90872 1.57158 1.68892 1.17669 1.46617 1.48881 1.29138 1.07480 1.21903 0.89436 0.90961 0.96778 1.19510 0.97435 0.87924 0.96948 0.86923 1.29409 0.91424 0.93854 0.93237 1.81014 1.10340 1.13690 1.10715 1.18959 0.93128 0.92398 0.95203 1.21444 0.95484 1.03277 1.37770 0.93126 1.25674 1.02707 0.95005 0.95124 1.70014 1.36550 1.10104 1.39191 0.85690 0.80665 0.78151 0.78052 1.19210 1.20717 1.20234 1.15906 0.79875 0.82264 0.81682 1.90921 1.48053 1.41911 1.60472 1.45062 1.50610 1.27471 1.05214 1.17658 0.97984 0.96281 0.78977 1.21046 1.00666 0.96690 0.97301 1.21135 0.98361 0.99301 0.90397 1.21062 1.03739 0.98911 0.85829 1.98375 1.95686 1.94112 1.16078 1.21036 0.97025 0.96073 0.95852 1.21415 1.02700 1.01863 0.91737 0.87205 0.88032 0.91698 0.84825 0.87328 0.93892 0.97044 0.92544 0.81342 0.81689 0.83666 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.28 71.98 0.67 -0.66 16 2 C 0.09 1.42 3.35 44.37 0.15 1.57 16 3 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.52 12.71 6.93 87.94 0.61 13.32 16 5 O -0.48 -14.82 17.08 -2.90 -0.05 -14.87 16 6 N -0.58 -15.13 2.49 -773.11 -1.93 -17.05 16 7 C 0.13 3.79 5.13 86.38 0.44 4.23 16 8 C 0.00 0.16 2.42 -12.60 -0.03 0.13 16 9 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 10 C 0.24 9.87 12.37 89.44 1.11 10.97 16 11 N -0.48 -21.57 18.54 20.01 0.37 -21.20 16 12 C 0.04 1.93 4.42 29.85 0.13 2.06 16 13 C -0.54 -28.89 8.60 25.60 0.22 -28.67 16 14 H 0.05 2.70 7.59 -2.91 -0.02 2.68 16 15 C 0.01 0.79 5.46 84.65 0.46 1.25 16 16 N -0.92 -52.47 13.29 21.45 0.28 -52.19 16 17 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 C 0.70 17.92 8.23 179.44 1.48 19.39 16 22 O -0.54 -16.50 14.45 -3.85 -0.06 -16.55 16 23 N -0.56 -10.56 2.95 -627.44 -1.85 -12.41 16 24 C 0.18 3.13 6.55 38.14 0.25 3.38 16 25 C -0.14 -1.42 8.73 22.39 0.20 -1.23 16 26 C -0.07 -0.75 9.82 22.27 0.22 -0.53 16 27 C -0.07 -0.95 6.32 22.34 0.14 -0.81 16 28 Cl -0.07 -0.97 28.95 -2.72 -0.08 -1.05 16 29 C -0.08 -1.32 9.82 22.27 0.22 -1.10 16 30 C -0.16 -3.09 9.36 22.39 0.21 -2.88 16 31 H 0.11 0.42 5.53 -2.39 -0.01 0.41 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.13 3.48 7.87 -2.39 -0.02 3.46 16 35 H 0.11 3.05 8.00 -2.38 -0.02 3.03 16 36 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 39 H 0.17 0.70 5.70 -2.91 -0.02 0.69 16 40 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.14 3.49 5.41 -2.91 -0.02 3.48 16 Total: -1.00 -70.76 378.79 6.27 -64.48 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.08 Total: 4.70 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: 6.47 Total: 20.43 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -3.12 Total: -102.85 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.11 Total: -31.42 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Total: -70.76 6.27 -64.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015238702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.851 kcal (2) G-P(sol) polarization free energy of solvation -70.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds