Wall clock time and date at job start Tue Mar 31 2020 05:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.65011 * 2 1 4 4 C 1.51573 * 110.59924 * 122.91244 * 2 1 3 5 5 O 1.21243 * 127.16000 * 298.56631 * 4 2 1 6 6 N 1.34766 * 105.68653 * 118.30212 * 4 2 1 7 7 C 1.46498 * 124.17938 * 180.26095 * 6 4 2 8 8 C 1.53003 * 109.47188 * 90.00044 * 7 6 4 9 9 H 1.08999 * 109.47190 * 305.00353 * 8 7 6 10 10 C 1.47201 * 109.47256 * 65.00046 * 8 7 6 11 11 N 5.20310 * 94.23835 * 185.37956 * 2 1 3 12 12 C 1.52998 * 109.47399 * 184.99985 * 8 7 6 13 13 C 1.50704 * 109.47388 * 174.99972 * 12 8 7 14 14 H 1.08001 * 119.99556 * 0.02562 * 13 12 8 15 15 C 1.37868 * 119.99891 * 179.97438 * 13 12 8 16 16 N 1.31519 * 120.00497 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99965 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47389 * 89.99491 * 17 15 13 19 19 H 1.48500 * 109.47292 * 210.00193 * 17 15 13 20 20 H 1.48508 * 109.46899 * 329.99926 * 17 15 13 21 21 C 1.33795 * 111.64200 * 0.22633 * 6 4 2 22 22 O 1.21545 * 123.76697 * 179.97438 * 21 6 4 23 23 N 1.34523 * 112.45569 * 359.97438 * 21 6 4 24 24 C 1.39990 * 126.68479 * 180.02562 * 23 21 6 25 25 C 1.38866 * 120.05495 * 179.70435 * 24 23 21 26 26 C 1.38108 * 119.94346 * 179.74342 * 25 24 23 27 27 C 1.38384 * 120.05227 * 0.50962 * 26 25 24 28 28 Cl 1.73604 * 119.93842 * 179.74600 * 27 26 25 29 29 C 1.38383 * 120.11900 * 359.76435 * 27 26 25 30 30 C 1.38108 * 120.05223 * 359.97438 * 29 27 26 31 31 H 1.09004 * 109.47577 * 298.54284 * 1 2 3 32 32 H 1.09002 * 109.47579 * 58.54272 * 1 2 3 33 33 H 1.09007 * 109.47152 * 178.53881 * 1 2 3 34 34 H 1.08996 * 109.47229 * 209.99923 * 7 6 4 35 35 H 1.08997 * 109.47185 * 330.00410 * 7 6 4 36 36 H 1.09003 * 109.47390 * 295.00378 * 12 8 7 37 37 H 1.09004 * 109.47209 * 55.00107 * 12 8 7 38 38 H 0.97000 * 119.99976 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.02502 * 359.97438 * 25 24 23 40 40 H 1.07997 * 119.97146 * 180.23512 * 26 25 24 41 41 H 1.07999 * 119.97256 * 179.97438 * 29 27 26 42 42 H 1.08000 * 120.02585 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0633 -0.7709 1.1911 5 8 1.8884 -0.5193 2.3642 6 7 2.7673 -1.7977 0.6750 7 6 3.4578 -2.8088 1.4794 8 6 2.5079 -3.9757 1.7569 9 1 1.5961 -3.5995 2.2208 10 6 2.1729 -4.6476 0.4907 11 7 1.9145 -5.1660 -0.4865 12 6 3.1858 -4.9723 2.6992 13 6 2.2084 -6.0577 3.0702 14 1 1.2042 -6.0388 2.6732 15 6 2.5965 -7.0754 3.9155 16 7 3.8198 -7.0992 4.3978 17 14 1.3852 -8.4212 4.3748 18 1 1.4849 -9.5325 3.3948 19 1 1.7018 -8.9296 5.7337 20 1 0.0057 -7.8714 4.3610 21 6 2.7571 -1.7799 -0.6628 22 8 3.3232 -2.6042 -1.3537 23 7 2.0502 -0.7479 -1.1576 24 6 1.8449 -0.4464 -2.5091 25 6 1.0816 0.6569 -2.8674 26 6 0.8849 0.9553 -4.2015 27 6 1.4391 0.1497 -5.1808 28 17 1.1845 0.5238 -6.8568 29 6 2.1954 -0.9536 -4.8264 30 6 2.3995 -1.2531 -3.4938 31 1 -0.3634 0.4910 0.9028 32 1 -0.3634 0.5363 -0.8766 33 1 -0.3634 -1.0274 -0.0262 34 1 4.3301 -3.1718 0.9361 35 1 3.7758 -2.3668 2.4237 36 1 4.0483 -5.4148 2.2007 37 1 3.5134 -4.4547 3.6009 38 1 4.0927 -7.8150 4.9929 39 1 0.6452 1.2833 -2.1035 40 1 0.2945 1.8154 -4.4806 41 1 2.6265 -1.5809 -5.5927 42 1 2.9903 -2.1141 -3.2177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015238703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:38 Heat of formation + Delta-G solvation = 9.409282 kcal Electronic energy + Delta-G solvation = -29515.691322 eV Core-core repulsion = 25294.924821 eV Total energy + Delta-G solvation = -4220.766501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.098 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.95584 -39.83596 -38.74203 -37.38887 -36.69113 -36.48833 -35.19253 -33.73880 -32.23407 -31.92437 -31.22780 -29.71120 -27.50658 -25.27104 -24.56193 -23.51452 -23.16794 -21.95029 -21.72630 -20.42064 -18.46638 -17.59561 -17.30934 -17.03680 -16.75398 -16.29739 -16.25049 -15.73924 -15.11105 -14.91693 -14.66361 -14.60168 -14.49843 -14.04981 -13.92826 -13.71171 -13.46258 -13.16692 -13.04056 -12.63157 -12.58635 -12.36991 -12.16407 -12.04145 -11.96541 -11.82670 -11.57176 -11.28879 -11.14441 -10.96734 -10.85097 -10.59881 -10.52151 -10.43552 -10.25243 -10.05441 -9.59024 -9.45427 -9.27845 -8.50584 -8.31106 -6.14844 -4.18495 0.68469 0.90306 1.42579 1.62284 1.88143 2.51811 2.72435 3.27257 3.33504 3.33977 3.36998 3.55066 3.59166 3.62907 4.08491 4.33579 4.36672 4.42573 4.45210 4.60954 4.67828 4.84429 4.94302 5.10424 5.12628 5.21586 5.22539 5.24244 5.31029 5.44067 5.50036 5.62276 5.65309 5.69748 5.91754 6.00904 6.06581 6.19638 6.32003 6.51612 6.85022 7.11342 7.31264 7.41043 7.76442 7.79620 8.14603 8.39581 8.84790 9.47261 10.95972 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.002376 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.641571 B =11783.675511 C =12682.954320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.086 3.914 3 H 0.134 0.866 4 C 0.528 3.472 5 O -0.449 6.449 6 N -0.572 5.572 7 C 0.122 3.878 8 C -0.006 4.006 9 H 0.105 0.895 10 C 0.228 3.772 11 N -0.449 5.449 12 C 0.035 3.965 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.698 3.302 22 O -0.505 6.505 23 N -0.565 5.565 24 C 0.203 3.797 25 C -0.151 4.151 26 C -0.079 4.079 27 C -0.063 4.063 28 Cl -0.074 7.074 29 C -0.075 4.075 30 C -0.139 4.139 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 22.244 -13.754 26.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.021 4.021 3 H 0.152 0.848 4 C 0.314 3.686 5 O -0.317 6.317 6 N -0.317 5.317 7 C 0.002 3.998 8 C -0.029 4.029 9 H 0.123 0.877 10 C -0.089 4.089 11 N -0.125 5.125 12 C -0.004 4.004 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.198 1.198 21 C 0.401 3.599 22 O -0.376 6.376 23 N -0.293 5.293 24 C 0.109 3.891 25 C -0.172 4.172 26 C -0.099 4.099 27 C -0.091 4.091 28 Cl -0.045 7.045 29 C -0.094 4.094 30 C -0.160 4.160 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.299 21.005 -14.943 26.134 hybrid contribution -0.540 -0.669 0.596 1.046 sum -4.840 20.336 -14.347 25.354 Atomic orbital electron populations 1.22113 0.89988 1.04744 1.04779 1.22332 0.98418 0.98409 0.82929 0.84847 1.20645 0.77518 0.80644 0.89834 1.90857 1.55824 1.69046 1.16015 1.46631 1.49596 1.28298 1.07215 1.22124 0.95369 0.86198 0.96138 1.19597 1.00635 0.94481 0.88158 0.87725 1.28893 0.93060 0.93280 0.93703 1.81011 1.09225 1.09668 1.12589 1.19166 0.96193 0.92160 0.92855 1.21052 0.98123 1.08491 1.28872 0.92536 1.24935 0.95280 0.97900 0.95739 1.69929 1.17185 1.33154 1.32523 0.86569 0.81453 0.82116 0.77808 1.20602 1.20999 1.19757 1.15867 0.80077 0.81729 0.82196 1.90965 1.46744 1.39750 1.60099 1.45059 1.51657 1.28123 1.04467 1.17448 0.96776 0.95096 0.79816 1.20749 1.02132 0.97840 0.96465 1.20784 0.99019 0.99167 0.90885 1.20898 1.03939 0.98917 0.85305 1.98368 1.95785 1.94217 1.16163 1.20973 0.96820 0.95428 0.96225 1.21546 1.02056 1.01526 0.90831 0.88963 0.89847 0.90887 0.87662 0.86359 0.95110 0.93869 0.92675 0.84284 0.84355 0.84317 0.81834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.25 37.16 0.34 -0.72 16 2 C 0.09 0.71 3.34 -68.21 -0.23 0.48 16 3 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.53 6.09 7.65 -10.56 -0.08 6.01 16 5 O -0.45 -6.09 17.76 5.59 0.10 -5.99 16 6 N -0.57 -7.60 2.49 -120.73 -0.30 -7.90 16 7 C 0.12 1.77 5.14 -4.04 -0.02 1.75 16 8 C -0.01 -0.11 2.42 -93.41 -0.23 -0.34 16 9 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 10 C 0.23 4.76 12.19 -20.76 -0.25 4.51 16 11 N -0.45 -10.19 18.50 42.15 0.78 -9.41 16 12 C 0.03 0.79 4.42 -27.88 -0.12 0.66 16 13 C -0.53 -13.87 8.60 -34.44 -0.30 -14.17 16 14 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 17 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 21 C 0.70 9.80 7.58 -88.02 -0.67 9.13 16 22 O -0.50 -8.59 13.49 5.33 0.07 -8.52 16 23 N -0.57 -6.14 2.95 -112.25 -0.33 -6.47 16 24 C 0.20 2.09 6.55 -83.67 -0.55 1.54 16 25 C -0.15 -1.13 8.81 -39.40 -0.35 -1.48 16 26 C -0.08 -0.59 9.82 -39.58 -0.39 -0.98 16 27 C -0.06 -0.56 6.32 -39.47 -0.25 -0.81 16 28 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 29 C -0.08 -0.74 9.82 -39.58 -0.39 -1.13 16 30 C -0.14 -1.60 9.36 -39.40 -0.37 -1.97 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.40 5.63 -51.93 -0.29 0.11 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 1.52 7.86 -51.93 -0.41 1.11 16 35 H 0.12 1.48 8.00 -51.93 -0.42 1.07 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.14 0.67 5.66 -52.49 -0.30 0.38 16 40 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.16 2.27 5.41 -52.49 -0.28 1.98 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -32.56 378.47 -8.32 -40.87 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -4.61 Total: -2.10 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -3.94 Total: 4.13 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.88 Total: -48.15 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.17 Total: -14.51 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.56 -8.32 -40.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015238703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.283 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds