Wall clock time and date at job start Tue Mar 31 2020 05:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.65011 * 2 1 4 4 C 1.51573 * 110.59924 * 122.91244 * 2 1 3 5 5 O 1.21243 * 127.16000 * 298.56631 * 4 2 1 6 6 N 1.34766 * 105.68653 * 118.30212 * 4 2 1 7 7 C 1.46498 * 124.17938 * 180.26095 * 6 4 2 8 8 C 1.53003 * 109.47188 * 90.00044 * 7 6 4 9 9 H 1.08999 * 109.47190 * 305.00353 * 8 7 6 10 10 C 1.47201 * 109.47256 * 65.00046 * 8 7 6 11 11 N 5.20310 * 94.23835 * 185.37956 * 2 1 3 12 12 C 1.52998 * 109.47399 * 184.99985 * 8 7 6 13 13 C 1.50704 * 109.47388 * 174.99972 * 12 8 7 14 14 H 1.08001 * 119.99556 * 0.02562 * 13 12 8 15 15 C 1.37868 * 119.99891 * 179.97438 * 13 12 8 16 16 N 1.31519 * 120.00497 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99965 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47389 * 89.99491 * 17 15 13 19 19 H 1.48500 * 109.47292 * 210.00193 * 17 15 13 20 20 H 1.48508 * 109.46899 * 329.99926 * 17 15 13 21 21 C 1.33795 * 111.64200 * 0.22633 * 6 4 2 22 22 O 1.21545 * 123.76697 * 179.97438 * 21 6 4 23 23 N 1.34523 * 112.45569 * 359.97438 * 21 6 4 24 24 C 1.39990 * 126.68479 * 180.02562 * 23 21 6 25 25 C 1.38866 * 120.05495 * 179.70435 * 24 23 21 26 26 C 1.38108 * 119.94346 * 179.74342 * 25 24 23 27 27 C 1.38384 * 120.05227 * 0.50962 * 26 25 24 28 28 Cl 1.73604 * 119.93842 * 179.74600 * 27 26 25 29 29 C 1.38383 * 120.11900 * 359.76435 * 27 26 25 30 30 C 1.38108 * 120.05223 * 359.97438 * 29 27 26 31 31 H 1.09004 * 109.47577 * 298.54284 * 1 2 3 32 32 H 1.09002 * 109.47579 * 58.54272 * 1 2 3 33 33 H 1.09007 * 109.47152 * 178.53881 * 1 2 3 34 34 H 1.08996 * 109.47229 * 209.99923 * 7 6 4 35 35 H 1.08997 * 109.47185 * 330.00410 * 7 6 4 36 36 H 1.09003 * 109.47390 * 295.00378 * 12 8 7 37 37 H 1.09004 * 109.47209 * 55.00107 * 12 8 7 38 38 H 0.97000 * 119.99976 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.02502 * 359.97438 * 25 24 23 40 40 H 1.07997 * 119.97146 * 180.23512 * 26 25 24 41 41 H 1.07999 * 119.97256 * 179.97438 * 29 27 26 42 42 H 1.08000 * 120.02585 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0633 -0.7709 1.1911 5 8 1.8884 -0.5193 2.3642 6 7 2.7673 -1.7977 0.6750 7 6 3.4578 -2.8088 1.4794 8 6 2.5079 -3.9757 1.7569 9 1 1.5961 -3.5995 2.2208 10 6 2.1729 -4.6476 0.4907 11 7 1.9145 -5.1660 -0.4865 12 6 3.1858 -4.9723 2.6992 13 6 2.2084 -6.0577 3.0702 14 1 1.2042 -6.0388 2.6732 15 6 2.5965 -7.0754 3.9155 16 7 3.8198 -7.0992 4.3978 17 14 1.3852 -8.4212 4.3748 18 1 1.4849 -9.5325 3.3948 19 1 1.7018 -8.9296 5.7337 20 1 0.0057 -7.8714 4.3610 21 6 2.7571 -1.7799 -0.6628 22 8 3.3232 -2.6042 -1.3537 23 7 2.0502 -0.7479 -1.1576 24 6 1.8449 -0.4464 -2.5091 25 6 1.0816 0.6569 -2.8674 26 6 0.8849 0.9553 -4.2015 27 6 1.4391 0.1497 -5.1808 28 17 1.1845 0.5238 -6.8568 29 6 2.1954 -0.9536 -4.8264 30 6 2.3995 -1.2531 -3.4938 31 1 -0.3634 0.4910 0.9028 32 1 -0.3634 0.5363 -0.8766 33 1 -0.3634 -1.0274 -0.0262 34 1 4.3301 -3.1718 0.9361 35 1 3.7758 -2.3668 2.4237 36 1 4.0483 -5.4148 2.2007 37 1 3.5134 -4.4547 3.6009 38 1 4.0927 -7.8150 4.9929 39 1 0.6452 1.2833 -2.1035 40 1 0.2945 1.8154 -4.4806 41 1 2.6265 -1.5809 -5.5927 42 1 2.9903 -2.1141 -3.2177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015238703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:38 Heat of formation + Delta-G solvation = -8.257221 kcal Electronic energy + Delta-G solvation = -29516.457399 eV Core-core repulsion = 25294.924821 eV Total energy + Delta-G solvation = -4221.532578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.098 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.89262 -40.63010 -39.70897 -38.64756 -37.75672 -37.33012 -36.44252 -35.50268 -33.76807 -32.75397 -31.98231 -30.62003 -28.98154 -26.46460 -25.65250 -24.25060 -24.17545 -23.71736 -22.53394 -21.35168 -19.38844 -18.68448 -18.46774 -18.35128 -17.87857 -17.69853 -17.08109 -16.84653 -16.52257 -15.93938 -15.76567 -15.62775 -15.26025 -15.13339 -15.04124 -14.63222 -14.59161 -14.37756 -14.15099 -13.95571 -13.76814 -13.52098 -13.23337 -13.15129 -13.00711 -12.94420 -12.76253 -12.71417 -12.68106 -12.51082 -12.19318 -12.07459 -11.77900 -11.45839 -11.42361 -11.27767 -11.21150 -10.85504 -10.58895 -10.13583 -9.06850 -8.23000 -6.31427 -0.08403 0.22030 0.54790 0.71044 1.18379 1.37895 1.40228 1.49077 1.66395 1.72203 1.89447 1.95713 2.38950 2.60946 2.74531 3.05182 3.14149 3.36400 3.71643 3.81595 3.85687 3.86219 3.96603 4.04254 4.15249 4.17952 4.28961 4.36995 4.55929 4.63874 4.66931 4.72075 4.78375 4.85111 5.00751 5.11874 5.22310 5.28343 5.29936 5.38996 5.52481 5.73035 5.73340 5.93791 6.12825 6.20554 6.69296 6.76474 6.81363 7.36952 8.87809 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.002376 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.641571 B =11783.675511 C =12682.954320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.092 3.908 3 H 0.178 0.822 4 C 0.527 3.473 5 O -0.469 6.469 6 N -0.577 5.577 7 C 0.130 3.870 8 C 0.005 3.995 9 H 0.117 0.883 10 C 0.239 3.761 11 N -0.485 5.485 12 C 0.042 3.958 13 C -0.541 4.541 14 H 0.051 0.949 15 C 0.014 3.986 16 N -0.919 5.919 17 Si 0.948 3.052 18 H -0.284 1.284 19 H -0.276 1.276 20 H -0.265 1.265 21 C 0.690 3.310 22 O -0.546 6.546 23 N -0.559 5.559 24 C 0.186 3.814 25 C -0.132 4.132 26 C -0.071 4.071 27 C -0.068 4.068 28 Cl -0.070 7.070 29 C -0.084 4.084 30 C -0.163 4.163 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.048 0.952 34 H 0.101 0.899 35 H 0.141 0.859 36 H 0.008 0.992 37 H 0.046 0.954 38 H 0.265 0.735 39 H 0.177 0.823 40 H 0.170 0.830 41 H 0.139 0.861 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.256 25.350 -13.778 29.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.012 4.012 3 H 0.195 0.805 4 C 0.315 3.685 5 O -0.338 6.338 6 N -0.322 5.322 7 C 0.008 3.992 8 C -0.018 4.018 9 H 0.134 0.866 10 C -0.078 4.078 11 N -0.162 5.162 12 C 0.003 3.997 13 C -0.579 4.579 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.559 5.559 17 Si 0.774 3.226 18 H -0.211 1.211 19 H -0.201 1.201 20 H -0.190 1.190 21 C 0.393 3.607 22 O -0.420 6.420 23 N -0.286 5.286 24 C 0.092 3.908 25 C -0.153 4.153 26 C -0.090 4.090 27 C -0.095 4.095 28 Cl -0.041 7.041 29 C -0.103 4.103 30 C -0.184 4.184 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.159 0.841 36 H 0.026 0.974 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.194 0.806 40 H 0.188 0.812 41 H 0.157 0.843 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.308 24.156 -14.978 29.114 hybrid contribution 0.065 -1.595 0.527 1.681 sum -6.243 22.561 -14.450 27.509 Atomic orbital electron populations 1.22182 0.88253 1.03921 1.06933 1.22666 0.99475 0.99193 0.79890 0.80515 1.21190 0.76652 0.80139 0.90497 1.90852 1.56439 1.69452 1.17083 1.46622 1.49966 1.28498 1.07112 1.21922 0.94163 0.85605 0.97488 1.19537 1.01540 0.94603 0.86081 0.86573 1.29403 0.92033 0.92555 0.93846 1.80999 1.10563 1.10766 1.13828 1.18966 0.94929 0.92290 0.93539 1.21445 0.98524 1.09498 1.28408 0.93062 1.25676 0.96782 1.00047 0.96037 1.70014 1.18562 1.34012 1.33310 0.85703 0.79863 0.79443 0.77634 1.21075 1.20087 1.18959 1.16098 0.80246 0.82144 0.82176 1.90951 1.48610 1.41515 1.60890 1.45101 1.50807 1.27313 1.05360 1.17651 0.97877 0.96142 0.79110 1.21092 1.00282 0.96501 0.97382 1.21182 0.98113 0.99331 0.90360 1.21042 1.03734 0.98758 0.85978 1.98372 1.95701 1.94082 1.15975 1.20979 0.97458 0.96237 0.95645 1.21361 1.03252 1.01590 0.92168 0.87229 0.87176 0.93252 0.88097 0.84098 0.97388 0.93603 0.92558 0.80597 0.81228 0.84280 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.25 71.98 0.67 -0.82 16 2 C 0.09 1.23 3.34 44.37 0.15 1.37 16 3 H 0.18 0.91 8.14 -2.39 -0.02 0.90 16 4 C 0.53 11.16 7.65 87.94 0.67 11.83 16 5 O -0.47 -11.74 17.76 -2.92 -0.05 -11.79 16 6 N -0.58 -15.02 2.49 -773.13 -1.93 -16.95 16 7 C 0.13 3.75 5.14 86.38 0.44 4.19 16 8 C 0.00 0.18 2.42 -12.60 -0.03 0.15 16 9 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 10 C 0.24 10.21 12.19 89.44 1.09 11.30 16 11 N -0.48 -22.77 18.50 20.01 0.37 -22.40 16 12 C 0.04 1.91 4.42 29.85 0.13 2.04 16 13 C -0.54 -28.74 8.60 25.60 0.22 -28.52 16 14 H 0.05 2.72 7.59 -2.91 -0.02 2.70 16 15 C 0.01 0.77 5.46 84.65 0.46 1.23 16 16 N -0.92 -52.46 13.29 21.44 0.28 -52.18 16 17 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 18 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 C 0.69 19.48 7.58 179.44 1.36 20.84 16 22 O -0.55 -19.62 13.49 -3.86 -0.05 -19.67 16 23 N -0.56 -11.29 2.95 -627.48 -1.85 -13.15 16 24 C 0.19 3.54 6.55 38.14 0.25 3.79 16 25 C -0.13 -1.46 8.81 22.39 0.20 -1.27 16 26 C -0.07 -0.79 9.82 22.27 0.22 -0.57 16 27 C -0.07 -1.08 6.32 22.34 0.14 -0.94 16 28 Cl -0.07 -1.06 28.95 -2.72 -0.08 -1.14 16 29 C -0.08 -1.66 9.82 22.27 0.22 -1.44 16 30 C -0.16 -3.87 9.36 22.39 0.21 -3.66 16 31 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.11 0.47 5.63 -2.39 -0.01 0.46 16 33 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.10 3.01 7.86 -2.39 -0.02 2.99 16 35 H 0.14 3.41 8.00 -2.39 -0.02 3.39 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 39 H 0.18 0.60 5.66 -2.91 -0.02 0.58 16 40 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 41 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.13 4.02 5.41 -2.91 -0.02 4.01 16 Total: -1.00 -73.50 378.47 6.20 -67.30 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.08 Total: 4.84 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 6.40 Total: 19.54 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -3.13 Total: -104.67 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.10 Total: -31.45 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -73.50 6.20 -67.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015238703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.039 kcal (2) G-P(sol) polarization free energy of solvation -73.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds