Wall clock time and date at job start Tue Mar 31 2020 05:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.53679 * 2 1 4 4 C 1.51582 * 110.59660 * 237.00644 * 2 1 3 5 5 O 1.21239 * 127.15758 * 61.51385 * 4 2 1 6 6 N 1.34766 * 105.68840 * 241.47563 * 4 2 1 7 7 C 1.46499 * 124.18384 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47246 * 89.99247 * 7 6 4 9 9 H 1.09000 * 109.47220 * 305.00136 * 8 7 6 10 10 C 1.47193 * 109.46890 * 65.00832 * 8 7 6 11 11 N 5.20595 * 154.35985 * 167.53200 * 2 1 3 12 12 C 1.53003 * 109.46878 * 185.00133 * 8 7 6 13 13 C 1.50704 * 109.46926 * 175.00093 * 12 8 7 14 14 H 1.07999 * 119.99994 * 0.02562 * 13 12 8 15 15 C 1.37879 * 119.99905 * 180.02562 * 13 12 8 16 16 N 1.31512 * 119.99982 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99911 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47311 * 90.00042 * 17 15 13 19 19 H 1.48506 * 109.47163 * 210.00221 * 17 15 13 20 20 H 1.48507 * 109.47151 * 329.99687 * 17 15 13 21 21 C 1.33798 * 111.63987 * 359.76433 * 6 4 2 22 22 O 1.21543 * 123.77205 * 180.25162 * 21 6 4 23 23 N 1.34522 * 112.45932 * 0.41209 * 21 6 4 24 24 C 1.39985 * 126.69230 * 179.86742 * 23 21 6 25 25 C 1.38867 * 120.05822 * 179.97438 * 24 23 21 26 26 C 1.38105 * 119.94199 * 180.25797 * 25 24 23 27 27 C 1.38390 * 120.05652 * 359.48678 * 26 25 24 28 28 Cl 1.73598 * 119.94281 * 180.25590 * 27 26 25 29 29 C 1.38381 * 120.11080 * 0.28255 * 27 26 25 30 30 C 1.38109 * 120.06085 * 359.97148 * 29 27 26 31 31 H 1.09000 * 109.46882 * 297.16765 * 1 2 3 32 32 H 1.09000 * 109.47076 * 57.16281 * 1 2 3 33 33 H 1.08997 * 109.46924 * 177.16303 * 1 2 3 34 34 H 1.08997 * 109.47130 * 210.00166 * 7 6 4 35 35 H 1.09009 * 109.46213 * 329.99502 * 7 6 4 36 36 H 1.08991 * 109.47237 * 295.00245 * 12 8 7 37 37 H 1.08999 * 109.46730 * 55.00372 * 12 8 7 38 38 H 0.97004 * 119.99996 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.02619 * 359.97438 * 25 24 23 40 40 H 1.08002 * 119.97432 * 179.77197 * 26 25 24 41 41 H 1.08008 * 119.96559 * 179.97438 * 29 27 26 42 42 H 1.07998 * 120.02820 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0633 -0.7727 -1.1901 5 8 1.8895 -0.5219 -2.3635 6 7 2.7715 -1.7959 -0.6726 7 6 3.4684 -2.8037 -1.4756 8 6 4.8972 -2.3338 -1.7559 9 1 4.8709 -1.3488 -2.2220 10 6 5.6458 -2.2582 -0.4908 11 7 6.2234 -2.1996 0.4863 12 6 5.5848 -3.3252 -2.6968 13 6 6.9473 -2.8007 -3.0706 14 1 7.2887 -1.8551 -2.6761 15 6 7.7578 -3.5280 -3.9162 16 7 8.9470 -3.0706 -4.2420 17 14 7.1668 -5.1632 -4.5990 18 1 6.4541 -4.9355 -5.8817 19 1 8.3328 -6.0529 -4.8318 20 1 6.2438 -5.8013 -3.6262 21 6 2.7641 -1.7743 0.6651 22 8 3.3374 -2.5926 1.3572 23 7 2.0484 -0.7477 1.1586 24 6 1.8414 -0.4454 2.5097 25 6 1.0739 0.6555 2.8664 26 6 0.8757 0.9546 4.2001 27 6 1.4323 0.1521 5.1806 28 17 1.1757 0.5270 6.8560 29 6 2.1935 -0.9483 4.8277 30 6 2.3991 -1.2488 3.4954 31 1 -0.3633 0.4692 0.9143 32 1 -0.3633 0.5573 -0.8635 33 1 -0.3633 -1.0264 -0.0509 34 1 3.4965 -3.7470 -0.9302 35 1 2.9407 -2.9450 -2.4189 36 1 5.6907 -4.2875 -2.1963 37 1 4.9832 -3.4482 -3.5974 38 1 9.5174 -3.5825 -4.8366 39 1 0.6363 1.2799 2.1016 40 1 0.2819 1.8129 4.4781 41 1 2.6271 -1.5728 5.5948 42 1 2.9936 -2.1075 3.2206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015238704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:42 Heat of formation + Delta-G solvation = 14.130433 kcal Electronic energy + Delta-G solvation = -29498.974500 eV Core-core repulsion = 25278.412724 eV Total energy + Delta-G solvation = -4220.561776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.00850 -39.87019 -38.79069 -37.46517 -36.74396 -36.52689 -35.23306 -33.76680 -32.27524 -31.99448 -31.27648 -29.84517 -27.90757 -25.42327 -24.61012 -23.54484 -23.17102 -21.83767 -21.57239 -20.46024 -18.49090 -17.80724 -17.32350 -17.13216 -16.80448 -16.50859 -16.30707 -15.86895 -15.20532 -15.00925 -14.72688 -14.57100 -14.34697 -14.05624 -13.94095 -13.73517 -13.51472 -13.37940 -13.15356 -12.68233 -12.58747 -12.43255 -12.41456 -12.11689 -12.07098 -11.99405 -11.65591 -11.32626 -11.31335 -11.05991 -10.86337 -10.54698 -10.54235 -10.37427 -10.30183 -9.99050 -9.65467 -9.47301 -9.39935 -8.66282 -8.33687 -6.15102 -4.16847 0.66022 0.88338 1.38237 1.57529 1.86257 2.46081 2.67008 3.23309 3.31111 3.32107 3.32496 3.50613 3.54484 3.57876 4.04430 4.28303 4.34151 4.39719 4.43521 4.51117 4.64478 4.81362 4.91554 5.03595 5.05112 5.08773 5.14907 5.19026 5.22568 5.36883 5.45521 5.52217 5.54308 5.66631 5.89414 5.96796 6.00336 6.07162 6.12788 6.48901 6.79073 6.79438 7.00216 7.05787 7.54959 7.72019 8.32096 8.37952 8.87021 9.43588 10.97822 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.002420 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.948658 B =11565.851379 C =12662.705755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.084 3.916 3 H 0.135 0.865 4 C 0.529 3.471 5 O -0.449 6.449 6 N -0.573 5.573 7 C 0.120 3.880 8 C 0.004 3.996 9 H 0.111 0.889 10 C 0.225 3.775 11 N -0.440 5.440 12 C -0.002 4.002 13 C -0.529 4.529 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.263 1.263 21 C 0.699 3.301 22 O -0.505 6.505 23 N -0.565 5.565 24 C 0.202 3.798 25 C -0.151 4.151 26 C -0.079 4.079 27 C -0.063 4.063 28 Cl -0.073 7.073 29 C -0.075 4.075 30 C -0.139 4.139 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.030 0.970 37 H 0.038 0.962 38 H 0.266 0.734 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.791 7.955 13.680 28.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.022 4.022 3 H 0.152 0.848 4 C 0.315 3.685 5 O -0.317 6.317 6 N -0.318 5.318 7 C -0.001 4.001 8 C -0.019 4.019 9 H 0.128 0.872 10 C -0.093 4.093 11 N -0.116 5.116 12 C -0.041 4.041 13 C -0.567 4.567 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.532 5.532 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.188 1.188 21 C 0.402 3.598 22 O -0.375 6.375 23 N -0.292 5.292 24 C 0.108 3.892 25 C -0.172 4.172 26 C -0.098 4.098 27 C -0.090 4.090 28 Cl -0.045 7.045 29 C -0.094 4.094 30 C -0.159 4.159 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -22.506 7.647 14.886 28.047 hybrid contribution -0.154 -0.745 -0.754 1.071 sum -22.660 6.902 14.132 27.583 Atomic orbital electron populations 1.22095 0.89951 1.04505 1.04822 1.22349 0.98362 0.98643 0.82865 0.84785 1.20636 0.77503 0.80560 0.89838 1.90858 1.56446 1.68405 1.15964 1.46577 1.48903 1.29049 1.07256 1.22118 0.91596 0.90081 0.96264 1.19334 0.90004 1.04551 0.88006 0.87165 1.28748 0.93671 0.93175 0.93694 1.81050 1.09226 1.08718 1.12605 1.19623 0.97025 0.93906 0.93501 1.20935 0.98271 1.08104 1.29409 0.90812 1.24978 0.94618 0.97734 0.95691 1.69899 1.09143 1.38829 1.35362 0.86819 0.78787 0.84096 0.79894 1.19897 1.21223 1.18756 1.15850 0.79788 0.82051 0.82140 1.90966 1.46038 1.40563 1.59980 1.45033 1.51385 1.28313 1.04490 1.17445 0.96766 0.95202 0.79776 1.20750 1.02191 0.97746 0.96494 1.20790 0.99088 0.99084 0.90870 1.20903 1.03855 0.98913 0.85349 1.98369 1.95740 1.94196 1.16167 1.20977 0.96665 0.95561 0.96237 1.21541 1.01693 1.01879 0.90826 0.89772 0.89029 0.91062 0.87633 0.86372 0.95203 0.94391 0.92457 0.84256 0.84326 0.84300 0.81843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 9.28 37.16 0.34 -0.47 16 2 C 0.08 0.67 3.35 -68.20 -0.23 0.44 16 3 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.53 5.87 7.65 -10.56 -0.08 5.78 16 5 O -0.45 -5.86 17.76 5.59 0.10 -5.76 16 6 N -0.57 -7.28 2.50 -120.73 -0.30 -7.58 16 7 C 0.12 1.62 5.14 -4.04 -0.02 1.60 16 8 C 0.00 0.06 2.42 -93.41 -0.23 -0.16 16 9 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 10 C 0.23 4.66 12.17 -20.74 -0.25 4.40 16 11 N -0.44 -10.03 18.48 42.17 0.78 -9.25 16 12 C 0.00 -0.03 3.49 -27.88 -0.10 -0.13 16 13 C -0.53 -14.11 9.15 -34.44 -0.32 -14.43 16 14 H 0.07 2.17 7.84 -52.49 -0.41 1.76 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 16 N -0.89 -26.82 13.96 55.43 0.77 -26.04 16 17 Si 0.88 20.31 27.47 -169.99 -4.67 15.64 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 21 C 0.70 9.49 7.58 -88.02 -0.67 8.82 16 22 O -0.50 -8.34 13.45 5.33 0.07 -8.27 16 23 N -0.56 -5.95 2.95 -112.24 -0.33 -6.29 16 24 C 0.20 2.04 6.55 -83.67 -0.55 1.49 16 25 C -0.15 -1.10 8.73 -39.40 -0.34 -1.45 16 26 C -0.08 -0.58 9.82 -39.57 -0.39 -0.96 16 27 C -0.06 -0.55 6.32 -39.47 -0.25 -0.80 16 28 Cl -0.07 -0.61 28.95 -51.86 -1.50 -2.11 16 29 C -0.08 -0.72 9.82 -39.58 -0.39 -1.11 16 30 C -0.14 -1.57 9.36 -39.40 -0.37 -1.94 16 31 H 0.08 0.32 5.53 -51.93 -0.29 0.03 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.11 1.38 7.86 -51.93 -0.41 0.97 16 35 H 0.12 1.31 8.00 -51.92 -0.42 0.90 16 36 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 37 H 0.04 0.72 7.57 -51.93 -0.39 0.33 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.14 0.65 5.70 -52.49 -0.30 0.35 16 40 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 42 H 0.16 2.22 5.41 -52.49 -0.28 1.93 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -33.99 374.69 -7.94 -41.93 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -4.58 Total: -0.92 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -3.93 Total: 3.01 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.92 Total: -49.16 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.17 Total: -14.03 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.99 -7.94 -41.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015238704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.062 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds