Wall clock time and date at job start Tue Mar 31 2020 05:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.53679 * 2 1 4 4 C 1.51582 * 110.59660 * 237.00644 * 2 1 3 5 5 O 1.21239 * 127.15758 * 61.51385 * 4 2 1 6 6 N 1.34766 * 105.68840 * 241.47563 * 4 2 1 7 7 C 1.46499 * 124.18384 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47246 * 89.99247 * 7 6 4 9 9 H 1.09000 * 109.47220 * 305.00136 * 8 7 6 10 10 C 1.47193 * 109.46890 * 65.00832 * 8 7 6 11 11 N 5.20595 * 154.35985 * 167.53200 * 2 1 3 12 12 C 1.53003 * 109.46878 * 185.00133 * 8 7 6 13 13 C 1.50704 * 109.46926 * 175.00093 * 12 8 7 14 14 H 1.07999 * 119.99994 * 0.02562 * 13 12 8 15 15 C 1.37879 * 119.99905 * 180.02562 * 13 12 8 16 16 N 1.31512 * 119.99982 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99911 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47311 * 90.00042 * 17 15 13 19 19 H 1.48506 * 109.47163 * 210.00221 * 17 15 13 20 20 H 1.48507 * 109.47151 * 329.99687 * 17 15 13 21 21 C 1.33798 * 111.63987 * 359.76433 * 6 4 2 22 22 O 1.21543 * 123.77205 * 180.25162 * 21 6 4 23 23 N 1.34522 * 112.45932 * 0.41209 * 21 6 4 24 24 C 1.39985 * 126.69230 * 179.86742 * 23 21 6 25 25 C 1.38867 * 120.05822 * 179.97438 * 24 23 21 26 26 C 1.38105 * 119.94199 * 180.25797 * 25 24 23 27 27 C 1.38390 * 120.05652 * 359.48678 * 26 25 24 28 28 Cl 1.73598 * 119.94281 * 180.25590 * 27 26 25 29 29 C 1.38381 * 120.11080 * 0.28255 * 27 26 25 30 30 C 1.38109 * 120.06085 * 359.97148 * 29 27 26 31 31 H 1.09000 * 109.46882 * 297.16765 * 1 2 3 32 32 H 1.09000 * 109.47076 * 57.16281 * 1 2 3 33 33 H 1.08997 * 109.46924 * 177.16303 * 1 2 3 34 34 H 1.08997 * 109.47130 * 210.00166 * 7 6 4 35 35 H 1.09009 * 109.46213 * 329.99502 * 7 6 4 36 36 H 1.08991 * 109.47237 * 295.00245 * 12 8 7 37 37 H 1.08999 * 109.46730 * 55.00372 * 12 8 7 38 38 H 0.97004 * 119.99996 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.02619 * 359.97438 * 25 24 23 40 40 H 1.08002 * 119.97432 * 179.77197 * 26 25 24 41 41 H 1.08008 * 119.96559 * 179.97438 * 29 27 26 42 42 H 1.07998 * 120.02820 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0633 -0.7727 -1.1901 5 8 1.8895 -0.5219 -2.3635 6 7 2.7715 -1.7959 -0.6726 7 6 3.4684 -2.8037 -1.4756 8 6 4.8972 -2.3338 -1.7559 9 1 4.8709 -1.3488 -2.2220 10 6 5.6458 -2.2582 -0.4908 11 7 6.2234 -2.1996 0.4863 12 6 5.5848 -3.3252 -2.6968 13 6 6.9473 -2.8007 -3.0706 14 1 7.2887 -1.8551 -2.6761 15 6 7.7578 -3.5280 -3.9162 16 7 8.9470 -3.0706 -4.2420 17 14 7.1668 -5.1632 -4.5990 18 1 6.4541 -4.9355 -5.8817 19 1 8.3328 -6.0529 -4.8318 20 1 6.2438 -5.8013 -3.6262 21 6 2.7641 -1.7743 0.6651 22 8 3.3374 -2.5926 1.3572 23 7 2.0484 -0.7477 1.1586 24 6 1.8414 -0.4454 2.5097 25 6 1.0739 0.6555 2.8664 26 6 0.8757 0.9546 4.2001 27 6 1.4323 0.1521 5.1806 28 17 1.1757 0.5270 6.8560 29 6 2.1935 -0.9483 4.8277 30 6 2.3991 -1.2488 3.4954 31 1 -0.3633 0.4692 0.9143 32 1 -0.3633 0.5573 -0.8635 33 1 -0.3633 -1.0264 -0.0509 34 1 3.4965 -3.7470 -0.9302 35 1 2.9407 -2.9450 -2.4189 36 1 5.6907 -4.2875 -2.1963 37 1 4.9832 -3.4482 -3.5974 38 1 9.5174 -3.5825 -4.8366 39 1 0.6363 1.2799 2.1016 40 1 0.2819 1.8129 4.4781 41 1 2.6271 -1.5728 5.5948 42 1 2.9936 -2.1075 3.2206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015238704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:41 Heat of formation + Delta-G solvation = -6.131207 kcal Electronic energy + Delta-G solvation = -29499.853111 eV Core-core repulsion = 25278.412724 eV Total energy + Delta-G solvation = -4221.440387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.89512 -40.63852 -39.71414 -38.68589 -37.76150 -37.33416 -36.44789 -35.46107 -33.90246 -32.76084 -32.00602 -30.74312 -29.30308 -26.50905 -25.60890 -24.24674 -24.09347 -23.43529 -22.52863 -21.35369 -19.36121 -18.98774 -18.82868 -18.15176 -17.96891 -17.62315 -17.08418 -16.92698 -16.30523 -15.88767 -15.78355 -15.65480 -15.32305 -15.16342 -15.14432 -14.67997 -14.62321 -14.41176 -14.15945 -14.06491 -13.75372 -13.68081 -13.24892 -13.19562 -13.02966 -12.95026 -12.73394 -12.68282 -12.60520 -12.25042 -12.20415 -11.97601 -11.72804 -11.51997 -11.45120 -11.28463 -11.20893 -10.90025 -10.75097 -10.14256 -9.07338 -8.27096 -6.33871 -0.09003 0.21269 0.54788 0.71250 1.17912 1.42490 1.45677 1.55596 1.65492 1.71169 1.87918 1.95382 2.39712 2.60230 2.74510 3.01535 3.11797 3.36188 3.73024 3.77604 3.81088 3.86074 3.96156 4.03139 4.14524 4.17324 4.29144 4.35483 4.53796 4.59346 4.68986 4.70286 4.75042 4.86674 4.99955 5.11875 5.13676 5.21714 5.27736 5.28236 5.34511 5.58785 5.72790 5.92518 6.18702 6.21521 6.68732 6.74112 6.77218 7.30495 8.89809 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.002420 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.948658 B =11565.851379 C =12662.705755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.088 3.912 3 H 0.163 0.837 4 C 0.529 3.471 5 O -0.468 6.468 6 N -0.577 5.577 7 C 0.127 3.873 8 C 0.008 3.992 9 H 0.114 0.886 10 C 0.236 3.764 11 N -0.486 5.486 12 C 0.000 4.000 13 C -0.533 4.533 14 H 0.026 0.974 15 C 0.003 3.997 16 N -0.953 5.953 17 Si 0.949 3.051 18 H -0.254 1.254 19 H -0.296 1.296 20 H -0.234 1.234 21 C 0.690 3.310 22 O -0.545 6.545 23 N -0.559 5.559 24 C 0.185 3.815 25 C -0.133 4.133 26 C -0.071 4.071 27 C -0.068 4.068 28 Cl -0.070 7.070 29 C -0.084 4.084 30 C -0.162 4.162 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.150 0.850 36 H 0.034 0.966 37 H 0.072 0.928 38 H 0.266 0.734 39 H 0.176 0.824 40 H 0.170 0.830 41 H 0.140 0.860 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.806 8.733 13.265 32.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 H 0.180 0.820 4 C 0.317 3.683 5 O -0.337 6.337 6 N -0.322 5.322 7 C 0.005 3.995 8 C -0.014 4.014 9 H 0.132 0.868 10 C -0.081 4.081 11 N -0.163 5.163 12 C -0.039 4.039 13 C -0.571 4.571 14 H 0.044 0.956 15 C -0.193 4.193 16 N -0.593 5.593 17 Si 0.771 3.229 18 H -0.178 1.178 19 H -0.222 1.222 20 H -0.157 1.157 21 C 0.393 3.607 22 O -0.418 6.418 23 N -0.286 5.286 24 C 0.092 3.908 25 C -0.154 4.154 26 C -0.090 4.090 27 C -0.095 4.095 28 Cl -0.041 7.041 29 C -0.103 4.103 30 C -0.183 4.183 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.168 0.832 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.193 0.807 40 H 0.187 0.813 41 H 0.158 0.842 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -26.581 8.468 14.493 31.437 hybrid contribution 1.125 -0.855 -0.528 1.509 sum -25.455 7.613 13.965 30.016 Atomic orbital electron populations 1.22151 0.87223 1.04662 1.06678 1.22671 1.00235 0.98725 0.80066 0.82016 1.21119 0.76747 0.80055 0.90405 1.90853 1.57133 1.68756 1.16939 1.46595 1.49031 1.29512 1.07067 1.22028 0.89147 0.90255 0.98056 1.19425 0.92002 1.04179 0.85801 0.86811 1.29474 0.92827 0.91916 0.93931 1.81038 1.10802 1.10147 1.14282 1.19567 0.94493 0.94340 0.95467 1.21296 1.01017 1.06358 1.28440 0.95584 1.26056 0.94581 1.02384 0.96321 1.70087 1.11147 1.41047 1.37061 0.85683 0.78516 0.78357 0.80324 1.17832 1.22235 1.15697 1.16097 0.79888 0.82447 0.82237 1.90953 1.47823 1.42290 1.60778 1.45093 1.50644 1.27569 1.05324 1.17646 0.97782 0.96185 0.79180 1.21090 1.00448 0.96454 0.97379 1.21181 0.98235 0.99228 0.90372 1.21044 1.03715 0.98786 0.85982 1.98372 1.95663 1.94072 1.16016 1.20988 0.97278 0.96350 0.95701 1.21365 1.02836 1.02002 0.92117 0.87649 0.87299 0.91832 0.87327 0.83208 0.94777 0.90961 0.92566 0.80689 0.81286 0.84242 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.28 71.98 0.67 -0.27 16 2 C 0.09 1.13 3.35 44.37 0.15 1.28 16 3 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 4 C 0.53 10.54 7.65 87.94 0.67 11.21 16 5 O -0.47 -11.03 17.76 -2.90 -0.05 -11.08 16 6 N -0.58 -13.94 2.50 -773.11 -1.93 -15.87 16 7 C 0.13 3.19 5.14 86.38 0.44 3.63 16 8 C 0.01 0.29 2.42 -12.60 -0.03 0.26 16 9 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 10 C 0.24 10.00 12.17 89.43 1.09 11.08 16 11 N -0.49 -23.11 18.48 20.01 0.37 -22.74 16 12 C 0.00 0.01 3.49 29.85 0.10 0.12 16 13 C -0.53 -28.94 9.15 25.60 0.23 -28.70 16 14 H 0.03 1.61 7.84 -2.91 -0.02 1.59 16 15 C 0.00 0.20 5.47 84.66 0.46 0.66 16 16 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 17 Si 0.95 41.16 27.47 68.60 1.88 43.04 16 18 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 19 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.23 -8.99 6.54 99.48 0.65 -8.34 16 21 C 0.69 18.62 7.58 179.44 1.36 19.98 16 22 O -0.54 -18.78 13.45 -3.85 -0.05 -18.83 16 23 N -0.56 -10.98 2.95 -627.44 -1.85 -12.83 16 24 C 0.19 3.48 6.55 38.14 0.25 3.73 16 25 C -0.13 -1.47 8.73 22.39 0.20 -1.28 16 26 C -0.07 -0.79 9.82 22.27 0.22 -0.58 16 27 C -0.07 -1.08 6.32 22.34 0.14 -0.94 16 28 Cl -0.07 -1.06 28.95 -2.72 -0.08 -1.14 16 29 C -0.08 -1.64 9.82 22.27 0.22 -1.42 16 30 C -0.16 -3.79 9.36 22.39 0.21 -3.58 16 31 H 0.11 0.23 5.53 -2.39 -0.01 0.22 16 32 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.11 2.70 7.86 -2.39 -0.02 2.68 16 35 H 0.15 2.83 8.00 -2.38 -0.02 2.81 16 36 H 0.03 1.36 7.20 -2.39 -0.02 1.35 16 37 H 0.07 2.48 7.57 -2.39 -0.02 2.46 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.18 0.63 5.70 -2.91 -0.02 0.61 16 40 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 41 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 42 H 0.13 3.96 5.41 -2.91 -0.02 3.95 16 Total: -1.00 -79.85 374.69 6.00 -73.84 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.03 Total: 9.33 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 6.39 Total: 15.19 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -3.11 Total: -110.35 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.10 Total: -29.91 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.88 Total: 43.04 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -79.85 6.00 -73.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015238704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.712 kcal (2) G-P(sol) polarization free energy of solvation -79.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds