Wall clock time and date at job start Tue Mar 31 2020 05:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35949 * 116.99990 * 2 1 4 4 C 1.38137 * 120.00492 * 0.21068 * 3 2 1 5 5 C 1.39859 * 119.84869 * 180.28145 * 4 3 2 6 6 C 1.47172 * 120.07568 * 179.76781 * 5 4 3 7 7 C 1.34527 * 120.00167 * 179.71921 * 6 5 4 8 8 C 1.47127 * 119.99962 * 180.27411 * 7 6 5 9 9 C 1.40787 * 119.29860 * 179.45252 * 8 7 6 10 10 C 1.36147 * 119.81213 * 179.73491 * 9 8 7 11 11 C 1.41039 * 118.34733 * 0.50717 * 10 9 8 12 12 C 1.40309 * 121.18742 * 179.78391 * 11 10 9 13 13 C 1.36231 * 119.66838 * 179.97438 * 12 11 10 14 14 C 1.50700 * 119.56251 * 180.02562 * 13 12 11 15 15 C 1.39322 * 120.87506 * 0.02713 * 13 12 11 16 16 C 1.36109 * 121.03542 * 359.97438 * 15 13 12 17 17 C 1.40677 * 119.75422 * 359.97438 * 16 15 13 18 18 N 1.32285 * 119.29701 * 359.72371 * 8 7 6 19 19 C 1.39921 * 119.85364 * 359.48327 * 5 4 3 20 20 C 1.37719 * 120.01064 * 0.28266 * 19 5 4 21 21 C 1.39009 * 120.14915 * 359.97365 * 20 19 5 22 22 O 1.35667 * 119.92620 * 180.02562 * 21 20 19 23 23 C 1.34780 * 117.00013 * 354.39022 * 22 21 20 24 24 H 1.07993 * 120.00311 * 5.05603 * 23 22 21 25 25 C 1.38652 * 119.99699 * 185.06243 * 23 22 21 26 26 N 1.31558 * 119.99901 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99950 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47144 * 89.99697 * 27 25 23 29 29 H 1.48498 * 109.47089 * 209.99938 * 27 25 23 30 30 H 1.48503 * 109.47021 * 329.99807 * 27 25 23 31 31 H 1.09000 * 109.47309 * 60.00023 * 1 2 3 32 32 H 1.09003 * 109.47040 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47531 * 299.99945 * 1 2 3 34 34 H 1.08003 * 120.07628 * 0.04002 * 4 3 2 35 35 H 1.08002 * 119.99983 * 359.71640 * 6 5 4 36 36 H 1.07992 * 120.00373 * 359.97438 * 7 6 5 37 37 H 1.08001 * 120.09002 * 0.02562 * 9 8 7 38 38 H 1.08003 * 120.82583 * 180.26374 * 10 9 8 39 39 H 1.08007 * 120.16746 * 359.97438 * 12 11 10 40 40 H 1.09003 * 109.47077 * 90.00524 * 14 13 12 41 41 H 1.09004 * 109.46828 * 210.00432 * 14 13 12 42 42 H 1.09000 * 109.47187 * 330.00434 * 14 13 12 43 43 H 1.07997 * 119.47975 * 179.97438 * 15 13 12 44 44 H 1.08000 * 120.11650 * 180.02562 * 16 15 13 45 45 H 1.07998 * 119.99647 * 180.25374 * 19 5 4 46 46 H 1.08001 * 119.92980 * 179.97438 * 20 19 5 47 47 H 0.96998 * 119.99810 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2939 2.3699 0.0044 5 6 1.9322 3.6143 -0.0016 6 6 1.1357 4.8518 -0.0021 7 6 1.7512 6.0480 -0.0021 8 6 0.9548 7.2851 0.0035 9 6 1.6143 8.5289 0.0151 10 6 0.8877 9.6803 0.0149 11 6 -0.5195 9.5842 0.0138 12 6 -1.3262 10.7322 0.0181 13 6 -2.6824 10.6033 0.0164 14 6 -3.5465 11.8379 0.0204 15 6 -3.2810 9.3453 0.0111 16 6 -2.5294 8.2105 0.0069 17 6 -1.1257 8.3028 0.0074 18 7 -0.3656 7.2050 0.0029 19 6 3.3299 3.6802 -0.0010 20 6 4.0741 2.5214 -0.0005 21 6 3.4400 1.2844 0.0000 22 8 4.1775 0.1457 0.0011 23 6 5.5133 0.2818 -0.1159 24 1 5.9573 1.2663 -0.1227 25 6 6.3175 -0.8421 -0.2276 26 7 5.7767 -2.0414 -0.2189 27 14 8.1688 -0.6536 -0.3904 28 1 8.7867 -0.6509 0.9600 29 1 8.7139 -1.7855 -1.1820 30 1 8.4774 0.6257 -1.0785 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 0.2153 2.3149 0.0085 35 1 0.0569 4.7996 -0.0025 36 1 2.8298 6.1003 -0.0014 37 1 2.6935 8.5696 0.0194 38 1 1.3766 10.6433 0.0194 39 1 -0.8742 11.7131 0.0227 40 1 -3.7541 12.1395 -1.0063 41 1 -4.4844 11.6232 0.5327 42 1 -3.0262 12.6440 0.5377 43 1 -4.3583 9.2693 0.0103 44 1 -3.0091 7.2429 0.0024 45 1 3.8252 4.6399 -0.0015 46 1 5.1528 2.5738 -0.0005 47 1 6.3393 -2.8277 -0.2967 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015349096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:41 Heat of formation + Delta-G solvation = 27.897037 kcal Electronic energy + Delta-G solvation = -29295.937363 eV Core-core repulsion = 25181.945744 eV Total energy + Delta-G solvation = -4113.991619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.88464 -39.66027 -37.88308 -37.61712 -36.52967 -33.81927 -33.55687 -32.44340 -31.43803 -30.44322 -29.67275 -28.72726 -27.11524 -26.13238 -25.36091 -24.38582 -23.14773 -22.21196 -21.91474 -21.36756 -19.34010 -18.28696 -18.14168 -17.46561 -16.87167 -16.62664 -15.76223 -15.40904 -15.17407 -14.92626 -14.65171 -14.60153 -14.56453 -14.18244 -14.02893 -13.93351 -13.70642 -13.53600 -13.40986 -13.24385 -13.04989 -12.62652 -12.22486 -12.05309 -11.94957 -11.74694 -11.65310 -11.56468 -11.50090 -11.32751 -11.07122 -10.97986 -10.75557 -10.68431 -10.61175 -10.43490 -9.60654 -9.53948 -9.50653 -8.95136 -8.61083 -8.20834 -7.84466 -6.77947 -6.56700 -4.08409 0.14422 0.56799 1.49535 1.91793 2.15480 2.63063 3.06199 3.07971 3.13339 3.26351 3.86851 3.97640 4.09052 4.11873 4.37390 4.51194 4.52963 4.56681 4.64760 4.85384 4.92353 4.95606 5.05976 5.10439 5.20808 5.23147 5.29841 5.34364 5.43883 5.50866 5.56378 5.59865 5.63159 5.67348 5.78129 5.83116 5.85166 5.85733 5.99795 6.06695 6.14834 6.26383 6.29118 6.41122 6.51276 6.63729 6.69110 6.76434 6.94075 7.07785 7.14156 7.33409 7.52373 7.83781 7.93807 8.11622 8.86564 9.56024 10.59330 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.001704 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.021175 B =16428.079623 C =17944.876278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.052 3.948 4 C -0.140 4.140 5 C -0.156 4.156 6 C 0.005 3.995 7 C -0.195 4.195 8 C 0.214 3.786 9 C -0.163 4.163 10 C -0.062 4.062 11 C -0.115 4.115 12 C -0.095 4.095 13 C -0.097 4.097 14 C -0.113 4.113 15 C -0.100 4.100 16 C -0.094 4.094 17 C 0.137 3.863 18 N -0.487 5.487 19 C -0.067 4.067 20 C -0.222 4.222 21 C 0.145 3.855 22 O -0.151 6.151 23 C -0.390 4.390 24 H 0.097 0.903 25 C 0.041 3.959 26 N -0.847 5.847 27 Si 0.944 3.056 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.265 1.265 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.116 0.884 46 H 0.137 0.863 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.664 22.921 0.288 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.016 4.016 7 C -0.214 4.214 8 C 0.066 3.934 9 C -0.183 4.183 10 C -0.087 4.087 11 C -0.117 4.117 12 C -0.114 4.114 13 C -0.097 4.097 14 C -0.170 4.170 15 C -0.120 4.120 16 C -0.113 4.113 17 C 0.014 3.986 18 N -0.197 5.197 19 C -0.085 4.085 20 C -0.241 4.241 21 C 0.089 3.911 22 O -0.052 6.052 23 C -0.466 4.466 24 H 0.114 0.886 25 C -0.166 4.166 26 N -0.480 5.480 27 Si 0.768 3.232 28 H -0.197 1.197 29 H -0.201 1.201 30 H -0.190 1.190 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.143 0.857 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.144 0.856 44 H 0.152 0.848 45 H 0.133 0.867 46 H 0.154 0.846 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.056 21.444 0.285 25.642 hybrid contribution 1.129 1.093 -0.071 1.573 sum -12.926 22.538 0.214 25.982 Atomic orbital electron populations 1.22906 0.80253 1.02996 1.00382 1.86233 1.19510 1.26279 1.89724 1.18066 0.89389 0.84579 1.07217 1.20863 0.98542 0.90968 1.05563 1.18236 0.92753 0.91637 1.13064 1.22199 0.99180 0.91045 0.89140 1.21587 0.98253 0.89695 1.11909 1.20296 0.89079 0.93315 0.90705 1.21895 1.01507 0.92553 1.02343 1.21342 0.92427 0.99053 0.95912 1.18818 0.94250 0.94440 1.04175 1.20788 0.93033 0.97279 1.00251 1.19632 0.94067 0.95266 1.00742 1.20805 0.99007 0.94836 1.02347 1.20761 1.00037 0.91578 0.99639 1.20817 0.91217 0.99299 0.99947 1.18856 0.94067 0.88016 0.97618 1.68237 1.05652 1.30546 1.15265 1.20913 0.92586 0.97325 0.97689 1.20845 1.00678 0.90786 1.11836 1.18853 0.88280 0.87679 0.96294 1.84010 1.19633 1.25751 1.75819 1.21484 0.78458 0.95021 1.51616 0.88615 1.25384 1.00786 0.94179 0.96225 1.70066 1.36501 0.97759 1.43635 0.85662 0.80060 0.78639 0.78822 1.19690 1.20102 1.18975 0.93470 0.89026 0.93498 0.85969 0.85932 0.85280 0.84454 0.84646 0.85670 0.91155 0.91464 0.91571 0.85564 0.84823 0.86656 0.84587 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 16 2 O -0.30 -6.57 10.28 -34.20 -0.35 -6.93 16 3 C 0.05 1.15 6.70 -39.12 -0.26 0.88 16 4 C -0.14 -2.57 8.77 -39.01 -0.34 -2.91 16 5 C -0.16 -2.74 5.87 -105.03 -0.62 -3.35 16 6 C 0.01 0.08 9.43 -37.27 -0.35 -0.27 16 7 C -0.20 -2.73 9.27 -37.29 -0.35 -3.07 16 8 C 0.21 2.94 6.71 -83.10 -0.56 2.38 16 9 C -0.16 -1.81 9.73 -39.37 -0.38 -2.19 16 10 C -0.06 -0.62 9.87 -39.27 -0.39 -1.01 16 11 C -0.11 -1.31 5.75 -106.71 -0.61 -1.92 16 12 C -0.09 -0.86 9.37 -39.53 -0.37 -1.23 16 13 C -0.10 -0.81 5.85 -104.94 -0.61 -1.43 16 14 C -0.11 -0.61 9.98 36.01 0.36 -0.25 16 15 C -0.10 -0.89 9.58 -39.94 -0.38 -1.27 16 16 C -0.09 -1.04 9.98 -39.43 -0.39 -1.43 16 17 C 0.14 1.81 6.61 -84.86 -0.56 1.25 16 18 N -0.49 -7.14 9.26 -7.70 -0.07 -7.21 16 19 C -0.07 -1.20 9.40 -39.14 -0.37 -1.56 16 20 C -0.22 -4.67 9.14 -39.49 -0.36 -5.03 16 21 C 0.15 3.52 6.67 -38.80 -0.26 3.26 16 22 O -0.15 -4.30 9.53 -14.17 -0.13 -4.43 16 23 C -0.39 -10.62 9.48 30.89 0.29 -10.33 16 24 H 0.10 2.36 5.19 -52.49 -0.27 2.09 16 25 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 26 N -0.85 -24.36 13.67 55.48 0.76 -23.60 16 27 Si 0.94 19.82 29.55 -169.99 -5.02 14.80 16 28 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 29 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 30 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 31 H 0.05 0.63 7.67 -51.93 -0.40 0.23 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.62 7.65 -51.93 -0.40 0.23 16 34 H 0.12 1.89 6.28 -52.48 -0.33 1.56 16 35 H 0.12 1.84 7.38 -52.49 -0.39 1.45 16 36 H 0.13 1.61 6.06 -52.49 -0.32 1.29 16 37 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.30 8.08 -51.93 -0.42 -0.11 16 42 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.12 1.71 6.15 -52.49 -0.32 1.39 16 46 H 0.14 2.79 5.62 -52.49 -0.29 2.49 16 47 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 400.08 15.07 6.03 6.03 Total: -1.00 -32.77 400.08 -10.07 -42.84 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -5.65 Total: 5.56 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -5.62 Total: -27.06 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.69 Total: -30.81 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.49 Total: -11.36 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.77 -10.07 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015349096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.736 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds