Wall clock time and date at job start Tue Mar 31 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35949 * 116.99990 * 2 1 4 4 C 1.38137 * 120.00492 * 0.21068 * 3 2 1 5 5 C 1.39859 * 119.84869 * 180.28145 * 4 3 2 6 6 C 1.47172 * 120.07568 * 179.76781 * 5 4 3 7 7 C 1.34527 * 120.00167 * 179.71921 * 6 5 4 8 8 C 1.47127 * 119.99962 * 180.27411 * 7 6 5 9 9 C 1.40787 * 119.29860 * 179.45252 * 8 7 6 10 10 C 1.36147 * 119.81213 * 179.73491 * 9 8 7 11 11 C 1.41039 * 118.34733 * 0.50717 * 10 9 8 12 12 C 1.40309 * 121.18742 * 179.78391 * 11 10 9 13 13 C 1.36231 * 119.66838 * 179.97438 * 12 11 10 14 14 C 1.50700 * 119.56251 * 180.02562 * 13 12 11 15 15 C 1.39322 * 120.87506 * 0.02713 * 13 12 11 16 16 C 1.36109 * 121.03542 * 359.97438 * 15 13 12 17 17 C 1.40677 * 119.75422 * 359.97438 * 16 15 13 18 18 N 1.32285 * 119.29701 * 359.72371 * 8 7 6 19 19 C 1.39921 * 119.85364 * 359.48327 * 5 4 3 20 20 C 1.37719 * 120.01064 * 0.28266 * 19 5 4 21 21 C 1.39009 * 120.14915 * 359.97365 * 20 19 5 22 22 O 1.35667 * 119.92620 * 180.02562 * 21 20 19 23 23 C 1.34780 * 117.00013 * 354.39022 * 22 21 20 24 24 H 1.07993 * 120.00311 * 5.05603 * 23 22 21 25 25 C 1.38652 * 119.99699 * 185.06243 * 23 22 21 26 26 N 1.31558 * 119.99901 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99950 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47144 * 89.99697 * 27 25 23 29 29 H 1.48498 * 109.47089 * 209.99938 * 27 25 23 30 30 H 1.48503 * 109.47021 * 329.99807 * 27 25 23 31 31 H 1.09000 * 109.47309 * 60.00023 * 1 2 3 32 32 H 1.09003 * 109.47040 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47531 * 299.99945 * 1 2 3 34 34 H 1.08003 * 120.07628 * 0.04002 * 4 3 2 35 35 H 1.08002 * 119.99983 * 359.71640 * 6 5 4 36 36 H 1.07992 * 120.00373 * 359.97438 * 7 6 5 37 37 H 1.08001 * 120.09002 * 0.02562 * 9 8 7 38 38 H 1.08003 * 120.82583 * 180.26374 * 10 9 8 39 39 H 1.08007 * 120.16746 * 359.97438 * 12 11 10 40 40 H 1.09003 * 109.47077 * 90.00524 * 14 13 12 41 41 H 1.09004 * 109.46828 * 210.00432 * 14 13 12 42 42 H 1.09000 * 109.47187 * 330.00434 * 14 13 12 43 43 H 1.07997 * 119.47975 * 179.97438 * 15 13 12 44 44 H 1.08000 * 120.11650 * 180.02562 * 16 15 13 45 45 H 1.07998 * 119.99647 * 180.25374 * 19 5 4 46 46 H 1.08001 * 119.92980 * 179.97438 * 20 19 5 47 47 H 0.96998 * 119.99810 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2939 2.3699 0.0044 5 6 1.9322 3.6143 -0.0016 6 6 1.1357 4.8518 -0.0021 7 6 1.7512 6.0480 -0.0021 8 6 0.9548 7.2851 0.0035 9 6 1.6143 8.5289 0.0151 10 6 0.8877 9.6803 0.0149 11 6 -0.5195 9.5842 0.0138 12 6 -1.3262 10.7322 0.0181 13 6 -2.6824 10.6033 0.0164 14 6 -3.5465 11.8379 0.0204 15 6 -3.2810 9.3453 0.0111 16 6 -2.5294 8.2105 0.0069 17 6 -1.1257 8.3028 0.0074 18 7 -0.3656 7.2050 0.0029 19 6 3.3299 3.6802 -0.0010 20 6 4.0741 2.5214 -0.0005 21 6 3.4400 1.2844 0.0000 22 8 4.1775 0.1457 0.0011 23 6 5.5133 0.2818 -0.1159 24 1 5.9573 1.2663 -0.1227 25 6 6.3175 -0.8421 -0.2276 26 7 5.7767 -2.0414 -0.2189 27 14 8.1688 -0.6536 -0.3904 28 1 8.7867 -0.6509 0.9600 29 1 8.7139 -1.7855 -1.1820 30 1 8.4774 0.6257 -1.0785 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 0.2153 2.3149 0.0085 35 1 0.0569 4.7996 -0.0025 36 1 2.8298 6.1003 -0.0014 37 1 2.6935 8.5696 0.0194 38 1 1.3766 10.6433 0.0194 39 1 -0.8742 11.7131 0.0227 40 1 -3.7541 12.1395 -1.0063 41 1 -4.4844 11.6232 0.5327 42 1 -3.0262 12.6440 0.5377 43 1 -4.3583 9.2693 0.0103 44 1 -3.0091 7.2429 0.0024 45 1 3.8252 4.6399 -0.0015 46 1 5.1528 2.5738 -0.0005 47 1 6.3393 -2.8277 -0.2967 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015349096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:40 Heat of formation + Delta-G solvation = 10.322551 kcal Electronic energy + Delta-G solvation = -29296.699450 eV Core-core repulsion = 25181.945744 eV Total energy + Delta-G solvation = -4114.753706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.71715 -41.26686 -39.28973 -38.77187 -37.96646 -34.96897 -34.44177 -34.17698 -32.46640 -31.32809 -31.15431 -29.98925 -28.18615 -27.53910 -26.87227 -25.32685 -24.16866 -23.36113 -23.02958 -22.68152 -20.59515 -19.90878 -19.38203 -18.82862 -17.86830 -17.66996 -17.15348 -16.77820 -16.67521 -16.35004 -15.90631 -15.55102 -15.48418 -15.36362 -15.25582 -15.09361 -14.99228 -14.91366 -14.25465 -14.15810 -13.94453 -13.73932 -13.53004 -13.33666 -13.17918 -13.05964 -12.75687 -12.72327 -12.48062 -12.45276 -12.34944 -12.22105 -12.12452 -12.03736 -11.91476 -11.51676 -11.29572 -10.96380 -10.55487 -10.44261 -9.64950 -9.37378 -9.06071 -8.46232 -8.31429 -6.10056 -0.76905 -0.27341 0.27466 0.55912 1.06022 1.36796 1.41887 1.54343 1.56729 2.18145 2.21956 2.55373 2.86888 3.14208 3.21350 3.24214 3.38028 3.58076 3.70548 3.88529 3.89268 4.00082 4.06758 4.16579 4.22142 4.28709 4.34551 4.40623 4.45090 4.46523 4.53616 4.59775 4.65583 4.69680 4.71362 4.85382 4.88652 4.93610 5.02434 5.09606 5.11861 5.13840 5.21864 5.33333 5.37493 5.40969 5.54185 5.57326 5.60769 5.74356 5.87914 5.94558 5.97408 6.00787 6.60196 6.97162 6.99392 7.78238 8.76669 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.001704 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.021175 B =16428.079623 C =17944.876278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.344 6.344 3 C 0.040 3.960 4 C -0.141 4.141 5 C -0.119 4.119 6 C -0.031 4.031 7 C -0.151 4.151 8 C 0.180 3.820 9 C -0.168 4.168 10 C -0.057 4.057 11 C -0.124 4.124 12 C -0.101 4.101 13 C -0.094 4.094 14 C -0.112 4.112 15 C -0.095 4.095 16 C -0.117 4.117 17 C 0.101 3.899 18 N -0.508 5.508 19 C -0.077 4.077 20 C -0.214 4.214 21 C 0.094 3.906 22 O -0.216 6.216 23 C -0.415 4.415 24 H 0.108 0.892 25 C -0.023 4.023 26 N -0.916 5.916 27 Si 1.021 2.979 28 H -0.263 1.263 29 H -0.273 1.273 30 H -0.249 1.249 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.152 0.848 35 H 0.125 0.875 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.173 0.827 39 H 0.155 0.845 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.152 0.848 44 H 0.132 0.868 45 H 0.155 0.845 46 H 0.136 0.864 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.158 29.289 0.251 32.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C -0.004 4.004 4 C -0.160 4.160 5 C -0.120 4.120 6 C -0.051 4.051 7 C -0.169 4.169 8 C 0.031 3.969 9 C -0.188 4.188 10 C -0.082 4.082 11 C -0.126 4.126 12 C -0.120 4.120 13 C -0.094 4.094 14 C -0.169 4.169 15 C -0.114 4.114 16 C -0.135 4.135 17 C -0.021 4.021 18 N -0.218 5.218 19 C -0.095 4.095 20 C -0.233 4.233 21 C 0.043 3.957 22 O -0.122 6.122 23 C -0.491 4.491 24 H 0.126 0.874 25 C -0.221 4.221 26 N -0.553 5.553 27 Si 0.840 3.160 28 H -0.187 1.187 29 H -0.198 1.198 30 H -0.172 1.172 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.083 0.917 34 H 0.170 0.830 35 H 0.142 0.858 36 H 0.168 0.832 37 H 0.182 0.818 38 H 0.191 0.809 39 H 0.172 0.828 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.170 0.830 44 H 0.150 0.850 45 H 0.172 0.828 46 H 0.153 0.847 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.617 27.891 0.253 31.967 hybrid contribution 0.941 -0.117 -0.042 0.949 sum -14.676 27.775 0.210 31.415 Atomic orbital electron populations 1.23262 0.77160 1.04941 1.01991 1.86183 1.22915 1.26911 1.89879 1.18392 0.89138 0.85751 1.07162 1.21216 0.99956 0.90126 1.04688 1.18639 0.92976 0.92364 1.08028 1.22012 0.99123 0.90417 0.93594 1.21978 0.99355 0.89483 1.06129 1.20457 0.89184 0.94211 0.93057 1.22143 1.02932 0.91714 1.01964 1.21790 0.91882 1.00400 0.94149 1.19171 0.95443 0.94469 1.03508 1.21153 0.93301 0.97790 0.99711 1.20083 0.94484 0.96182 0.98657 1.20879 0.99016 0.93622 1.03364 1.21130 1.01310 0.91219 0.97756 1.20982 0.90946 1.00266 1.01342 1.19224 0.94852 0.88653 0.99378 1.68139 1.06452 1.32013 1.15212 1.21253 0.92738 0.97794 0.97692 1.21038 1.01018 0.90867 1.10411 1.19522 0.89547 0.88136 0.98526 1.83993 1.20149 1.27718 1.80290 1.21962 0.78922 0.95873 1.52341 0.87450 1.26673 1.06167 0.93534 0.95751 1.70228 1.38422 0.98763 1.47915 0.84552 0.73139 0.79118 0.79169 1.18738 1.19790 1.17229 0.91755 0.87167 0.91695 0.83010 0.85758 0.83245 0.81764 0.80948 0.82783 0.90083 0.90392 0.90285 0.83048 0.85002 0.82773 0.84656 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.81 113.37 1.11 1.74 16 2 O -0.34 -15.77 10.28 -79.01 -0.81 -16.58 16 3 C 0.04 1.85 6.70 22.57 0.15 2.00 16 4 C -0.14 -5.13 8.77 22.64 0.20 -4.93 16 5 C -0.12 -4.01 5.87 -20.13 -0.12 -4.13 16 6 C -0.03 -0.87 9.43 23.77 0.22 -0.65 16 7 C -0.15 -3.74 9.27 23.75 0.22 -3.52 16 8 C 0.18 4.46 6.71 42.03 0.28 4.74 16 9 C -0.17 -3.09 9.73 22.41 0.22 -2.87 16 10 C -0.06 -0.91 9.87 22.47 0.22 -0.69 16 11 C -0.12 -2.44 5.75 -21.22 -0.12 -2.56 16 12 C -0.10 -1.43 9.37 22.31 0.21 -1.22 16 13 C -0.09 -1.21 5.85 -20.07 -0.12 -1.33 16 14 C -0.11 -0.70 9.98 71.24 0.71 0.01 16 15 C -0.09 -1.40 9.58 22.04 0.21 -1.19 16 16 C -0.12 -2.41 9.98 22.37 0.22 -2.19 16 17 C 0.10 2.49 6.61 40.35 0.27 2.76 16 18 N -0.51 -14.14 9.26 -178.26 -1.65 -15.79 16 19 C -0.08 -2.65 9.40 22.55 0.21 -2.43 16 20 C -0.21 -9.26 9.14 22.33 0.20 -9.06 16 21 C 0.09 4.87 6.67 22.78 0.15 5.02 16 22 O -0.22 -13.40 9.53 -7.34 -0.07 -13.47 16 23 C -0.42 -24.33 9.48 67.92 0.64 -23.69 16 24 H 0.11 5.63 5.19 -2.91 -0.02 5.62 16 25 C -0.02 -1.33 5.49 84.83 0.47 -0.87 16 26 N -0.92 -57.17 13.67 21.61 0.30 -56.88 16 27 Si 1.02 42.76 29.55 68.60 2.03 44.78 16 28 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 29 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 30 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 31 H 0.06 1.69 7.67 -2.39 -0.02 1.67 16 32 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.06 1.69 7.65 -2.39 -0.02 1.67 16 34 H 0.15 4.50 6.28 -2.91 -0.02 4.48 16 35 H 0.12 3.55 7.38 -2.91 -0.02 3.53 16 36 H 0.15 3.03 6.06 -2.91 -0.02 3.02 16 37 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 40 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.08 0.36 8.08 -2.38 -0.02 0.34 16 42 H 0.08 0.34 8.07 -2.39 -0.02 0.32 16 43 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 44 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 45 H 0.15 4.03 6.15 -2.91 -0.02 4.01 16 46 H 0.14 5.74 5.62 -2.91 -0.02 5.73 16 47 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -81.42 400.08 6.37 -75.04 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 1.01 Total: 27.93 kcal Atomic # 6 Polarization: -50.62 SS G_CDS: 5.57 Total: -45.05 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -1.36 Total: -72.67 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.88 Total: -30.05 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -81.42 6.37 -75.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015349096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.366 kcal (2) G-P(sol) polarization free energy of solvation -81.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds