Wall clock time and date at job start Tue Mar 31 2020 05:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86799 * 119.99410 * 2 1 4 4 H 1.48503 * 109.47205 * 239.99714 * 3 2 1 5 5 H 1.48500 * 109.47629 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47102 * 120.00303 * 3 2 1 7 7 C 1.40116 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99673 * 179.97438 * 7 2 1 9 9 C 1.46195 * 120.00322 * 0.02562 * 7 2 1 10 10 O 1.21725 * 119.99863 * 359.97438 * 9 7 2 11 11 N 1.34772 * 120.00381 * 179.97438 * 9 7 2 12 12 C 1.39069 * 120.00307 * 185.27994 * 11 9 7 13 13 C 1.39274 * 119.93431 * 33.64211 * 12 11 9 14 14 C 1.37606 * 120.06686 * 180.02562 * 13 12 11 15 15 C 1.39829 * 119.93702 * 359.97438 * 14 13 12 16 16 C 1.47466 * 120.07058 * 179.97438 * 15 14 13 17 17 O 1.21500 * 119.99811 * 359.97438 * 16 15 14 18 18 O 1.34749 * 119.99994 * 180.02562 * 16 15 14 19 19 C 1.45196 * 116.99780 * 179.97438 * 18 16 15 20 20 C 1.50704 * 109.47268 * 179.97438 * 19 18 16 21 21 C 1.38254 * 119.99769 * 359.97438 * 20 19 18 22 22 C 1.38217 * 120.07421 * 180.02562 * 21 20 19 23 23 C 1.38258 * 120.06714 * 359.97438 * 22 21 20 24 24 C 1.38371 * 120.00052 * 0.02562 * 23 22 21 25 25 F 1.35094 * 120.03647 * 179.97438 * 24 23 22 26 26 C 1.38373 * 120.00304 * 180.02562 * 20 19 18 27 27 F 1.35100 * 120.03354 * 0.25539 * 26 20 19 28 28 C 1.39840 * 119.86194 * 0.25340 * 15 14 13 29 29 C 1.37600 * 119.93340 * 359.53482 * 28 15 14 30 30 H 0.96999 * 120.00683 * 359.97438 * 1 2 3 31 31 H 0.97009 * 119.99938 * 5.28113 * 11 9 7 32 32 H 1.07999 * 119.96322 * 0.02562 * 13 12 11 33 33 H 1.08006 * 120.02897 * 179.97438 * 14 13 12 34 34 H 1.09001 * 109.47207 * 60.00311 * 19 18 16 35 35 H 1.09000 * 109.47758 * 299.99733 * 19 18 16 36 36 H 1.07999 * 119.96572 * 0.02562 * 21 20 19 37 37 H 1.07997 * 119.96693 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.00144 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.02952 * 179.74557 * 28 15 14 40 40 H 1.07996 * 119.96874 * 180.20764 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.0940 1.6966 -1.2125 5 1 1.2752 2.7465 0.0006 6 1 3.0940 1.6965 1.2125 7 6 2.0070 -1.2134 0.0005 8 1 3.0870 -1.2133 0.0001 9 6 1.2762 -2.4796 0.0005 10 8 0.0589 -2.4797 0.0005 11 7 1.9501 -3.6467 0.0005 12 6 1.2592 -4.8486 -0.1103 13 6 0.0989 -4.9150 -0.8777 14 6 -0.5871 -6.1027 -0.9888 15 6 -0.1179 -7.2438 -0.3307 16 6 -0.8510 -8.5180 -0.4473 17 8 -1.8642 -8.5770 -1.1154 18 8 -0.3979 -9.6166 0.1879 19 6 -1.1704 -10.8356 0.0288 20 6 -0.5159 -11.9499 0.8043 21 6 0.6441 -11.7078 1.5165 22 6 1.2459 -12.7287 2.2278 23 6 0.6888 -13.9941 2.2290 24 6 -0.4721 -14.2396 1.5173 25 9 -1.0168 -15.4759 1.5176 26 6 -1.0754 -13.2155 0.8027 27 9 -2.2055 -13.4543 0.1019 28 6 1.0448 -7.1727 0.4429 29 6 1.7289 -5.9833 0.5467 30 1 -0.4851 0.8400 0.0004 31 1 2.9171 -3.6485 0.0779 32 1 -0.2628 -4.0335 -1.3861 33 1 -1.4871 -6.1535 -1.5838 34 1 -1.2124 -11.1041 -1.0268 35 1 -2.1814 -10.6767 0.4038 36 1 1.0805 -10.7199 1.5170 37 1 2.1522 -12.5378 2.7831 38 1 1.1597 -14.7909 2.7855 39 1 1.4074 -8.0514 0.9557 40 1 2.6287 -5.9286 1.1414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016218267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:00 Heat of formation + Delta-G solvation = -177.906621 kcal Electronic energy + Delta-G solvation = -29618.069307 eV Core-core repulsion = 24805.090748 eV Total energy + Delta-G solvation = -4812.978559 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.096 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.58879 -49.67390 -41.76374 -40.77694 -39.96753 -38.69632 -37.56380 -35.41950 -34.57011 -33.33468 -31.95953 -31.34331 -31.13163 -28.61639 -27.83550 -25.12004 -24.05185 -23.75190 -23.02664 -22.29963 -21.49603 -19.58604 -19.26192 -19.01426 -18.37373 -18.01678 -17.81418 -17.81291 -17.53813 -17.49752 -17.27543 -16.12506 -16.10603 -15.95551 -15.69296 -15.57290 -15.45965 -15.04797 -14.92883 -14.75705 -14.58546 -14.23498 -14.14976 -13.73257 -13.54475 -13.51697 -13.14445 -13.08353 -12.79660 -12.76154 -12.71933 -12.31124 -12.15174 -12.07998 -12.04318 -11.71224 -11.15897 -10.89786 -10.11024 -9.96936 -9.83639 -9.80499 -8.93652 -8.38736 -6.96882 -0.27291 -0.15000 -0.09196 0.48010 1.34097 1.39604 1.41672 1.50481 1.56492 2.20375 2.33172 2.36138 2.71641 2.79850 2.90379 3.14384 3.38383 3.54605 3.60043 3.81911 3.84745 3.92117 4.02518 4.06436 4.11681 4.23216 4.39043 4.47818 4.66537 4.68264 4.79542 4.95213 5.01722 5.05143 5.18257 5.22670 5.24817 5.33687 5.40611 5.42671 5.69521 5.71653 5.78647 6.13500 6.26078 6.63014 6.76382 7.27074 8.30370 8.54105 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.029732 B = 0.001582 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.521512 B =17689.859904 C =18438.360419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.029 3.971 3 Si 1.000 3.000 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.251 1.251 7 C -0.561 4.561 8 H 0.098 0.902 9 C 0.526 3.474 10 O -0.604 6.604 11 N -0.686 5.686 12 C 0.209 3.791 13 C -0.171 4.171 14 C -0.035 4.035 15 C -0.184 4.184 16 C 0.527 3.473 17 O -0.543 6.543 18 O -0.334 6.334 19 C 0.111 3.889 20 C -0.106 4.106 21 C -0.080 4.080 22 C -0.081 4.081 23 C -0.115 4.115 24 C 0.051 3.949 25 F -0.140 7.140 26 C 0.050 3.950 27 F -0.142 7.142 28 C -0.015 4.015 29 C -0.175 4.175 30 H 0.278 0.722 31 H 0.414 0.586 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.166 0.834 37 H 0.183 0.817 38 H 0.175 0.825 39 H 0.179 0.821 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.890 -24.960 5.899 27.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.177 1.177 5 H -0.202 1.202 6 H -0.175 1.175 7 C -0.597 4.597 8 H 0.116 0.884 9 C 0.333 3.667 10 O -0.489 6.489 11 N -0.329 5.329 12 C 0.109 3.891 13 C -0.193 4.193 14 C -0.054 4.054 15 C -0.187 4.187 16 C 0.375 3.625 17 O -0.435 6.435 18 O -0.250 6.250 19 C 0.037 3.963 20 C -0.107 4.107 21 C -0.098 4.098 22 C -0.099 4.099 23 C -0.134 4.134 24 C 0.031 3.969 25 F -0.118 7.118 26 C 0.030 3.970 27 F -0.120 7.120 28 C -0.033 4.033 29 C -0.195 4.195 30 H 0.088 0.912 31 H 0.251 0.749 32 H 0.122 0.878 33 H 0.143 0.857 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.184 0.816 37 H 0.200 0.800 38 H 0.192 0.808 39 H 0.197 0.803 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.523 -24.868 5.673 26.593 hybrid contribution -0.727 0.594 -0.677 1.158 sum 6.796 -24.274 4.996 25.697 Atomic orbital electron populations 1.70132 1.09615 1.29540 1.34791 1.27009 0.95516 1.05086 0.91120 0.85017 0.78171 0.74412 0.80472 1.17746 1.20207 1.17512 1.21414 0.95230 0.89359 1.53670 0.88401 1.18781 0.87193 0.83841 0.76868 1.90629 1.15698 1.87054 1.55519 1.43773 1.10758 1.03851 1.74526 1.18567 0.92327 0.87263 0.90983 1.21019 0.98442 0.97635 1.02175 1.20971 0.97917 0.90617 0.95913 1.18854 1.00626 0.90044 1.09126 1.21099 0.82144 0.83969 0.75266 1.90831 1.26303 1.85840 1.40491 1.86411 1.53215 1.18053 1.67333 1.21513 0.94154 0.79955 1.00639 1.19450 0.98515 0.90965 1.01732 1.21376 0.92475 1.02137 0.93809 1.21602 1.00770 0.90262 0.97243 1.21566 0.92825 1.00487 0.98496 1.17872 0.96702 0.79370 1.02985 1.91508 1.85613 1.39364 1.95340 1.17565 0.86513 0.94035 0.98934 1.91496 1.48615 1.95049 1.76888 1.21479 0.90578 0.98371 0.92914 1.21208 1.04378 0.91354 1.02598 0.91200 0.74874 0.87808 0.85680 0.89399 0.89662 0.81609 0.79953 0.80774 0.80346 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.11 11.82 21.85 0.26 -46.86 16 2 C 0.03 1.53 5.50 85.33 0.47 2.00 16 3 Si 1.00 37.98 29.56 68.60 2.03 40.01 16 4 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 5 H -0.28 -10.34 7.11 99.48 0.71 -9.64 16 6 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 7 C -0.56 -29.19 9.54 24.79 0.24 -28.96 16 8 H 0.10 4.41 7.85 -2.91 -0.02 4.39 16 9 C 0.53 28.21 7.46 86.31 0.64 28.86 16 10 O -0.60 -37.83 12.69 -4.43 -0.06 -37.88 16 11 N -0.69 -28.05 5.30 -307.51 -1.63 -29.68 16 12 C 0.21 7.83 6.27 38.49 0.24 8.07 16 13 C -0.17 -7.19 8.62 22.37 0.19 -6.99 16 14 C -0.04 -1.26 9.58 22.51 0.22 -1.05 16 15 C -0.18 -5.42 5.88 -20.07 -0.12 -5.53 16 16 C 0.53 14.91 7.89 70.25 0.55 15.46 16 17 O -0.54 -18.75 16.13 19.84 0.32 -18.43 16 18 O -0.33 -7.02 7.93 -56.60 -0.45 -7.47 16 19 C 0.11 2.21 5.44 71.24 0.39 2.60 16 20 C -0.11 -1.73 5.88 -19.83 -0.12 -1.85 16 21 C -0.08 -0.85 9.38 22.27 0.21 -0.65 16 22 C -0.08 -0.50 10.04 22.27 0.22 -0.28 16 23 C -0.12 -1.00 10.02 22.31 0.22 -0.78 16 24 C 0.05 0.81 7.31 22.41 0.16 0.97 16 25 F -0.14 -2.65 17.18 44.97 0.77 -1.88 16 26 C 0.05 0.93 7.25 22.41 0.16 1.09 16 27 F -0.14 -3.22 16.72 44.97 0.75 -2.47 16 28 C -0.01 -0.34 9.60 22.51 0.22 -0.13 16 29 C -0.17 -4.60 9.94 22.37 0.22 -4.38 16 30 H 0.28 14.68 8.29 -92.71 -0.77 13.91 16 31 H 0.41 13.50 8.79 -92.70 -0.81 12.68 16 32 H 0.10 5.24 6.41 -2.91 -0.02 5.22 16 33 H 0.13 4.51 7.64 -2.91 -0.02 4.49 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.17 1.31 6.99 -2.91 -0.02 1.29 16 37 H 0.18 -0.19 8.06 -2.91 -0.02 -0.21 16 38 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 39 H 0.18 2.43 7.60 -2.91 -0.02 2.41 16 40 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -77.43 368.29 6.45 -70.99 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.32 Total: 25.19 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 4.13 Total: 8.48 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -1.37 Total: -76.54 kcal Atomic # 8 Polarization: -63.59 SS G_CDS: -0.19 Total: -63.78 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 1.52 Total: -4.35 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Total: -77.43 6.45 -70.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016218267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.920 kcal (2) G-P(sol) polarization free energy of solvation -77.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds