Wall clock time and date at job start Tue Mar 31 2020 05:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86795 * 120.00265 * 2 1 4 4 H 1.48497 * 109.47455 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46981 * 299.99590 * 3 2 1 6 6 H 1.48493 * 109.47200 * 59.99484 * 3 2 1 7 7 C 1.38636 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00320 * 180.02562 * 7 2 1 9 9 O 1.34822 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.35776 * 116.99775 * 174.80133 * 9 7 2 11 11 C 1.38909 * 119.99333 * 184.24149 * 10 9 7 12 12 C 1.38010 * 119.99785 * 179.72902 * 11 10 9 13 13 C 1.38915 * 119.99856 * 0.56819 * 12 11 10 14 14 N 1.39991 * 120.00507 * 179.72923 * 13 12 11 15 15 C 1.34773 * 119.99794 * 35.80522 * 14 13 12 16 16 O 1.21287 * 120.00255 * 354.98701 * 15 14 13 17 17 C 1.50705 * 119.99783 * 174.98935 * 15 14 13 18 18 C 1.53000 * 109.47000 * 160.71736 * 17 15 14 19 19 C 1.50698 * 109.62760 * 331.60947 * 18 17 15 20 20 O 1.20830 * 120.00167 * 120.19437 * 19 18 17 21 21 O 1.34234 * 119.99989 * 300.19127 * 19 18 17 22 22 C 1.50476 * 109.62954 * 211.22389 * 18 17 15 23 23 C 1.54268 * 112.38509 * 334.12719 * 22 18 17 24 24 C 1.54068 * 112.94713 * 318.57781 * 23 22 18 25 25 C 1.50470 * 112.50124 * 318.17139 * 24 23 22 26 26 C 1.54241 * 108.52320 * 94.14941 * 25 24 23 27 27 C 1.45545 * 112.40674 * 280.01291 * 26 25 24 28 28 C 1.38921 * 119.99540 * 359.70214 * 13 12 11 29 29 C 1.38005 * 120.00243 * 0.02562 * 28 13 12 30 30 H 0.97000 * 120.00178 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00365 * 359.97438 * 11 10 9 32 32 H 1.07996 * 119.99964 * 180.27221 * 12 11 10 33 33 H 0.97005 * 120.00090 * 215.81077 * 14 13 12 34 34 H 1.09003 * 109.46747 * 280.71068 * 17 15 14 35 35 H 1.08994 * 109.47257 * 40.71766 * 17 15 14 36 36 H 0.96696 * 117.00027 * 179.97438 * 21 19 18 37 37 H 1.08995 * 108.87926 * 95.21811 * 22 18 17 38 38 H 1.08999 * 108.87908 * 213.66644 * 22 18 17 39 39 H 1.09002 * 108.83365 * 197.62015 * 23 22 18 40 40 H 1.08994 * 108.57066 * 79.35445 * 23 22 18 41 41 H 1.09000 * 108.87594 * 197.39704 * 24 23 22 42 42 H 1.08997 * 108.79767 * 78.89776 * 24 23 22 43 43 H 1.09007 * 109.62795 * 334.44011 * 25 24 23 44 44 H 1.08997 * 109.63379 * 213.86631 * 25 24 23 45 45 H 1.09008 * 108.89234 * 159.26669 * 26 25 24 46 46 H 1.08991 * 108.89716 * 40.77123 * 26 25 24 47 47 H 1.08996 * 108.89804 * 301.18986 * 27 26 25 48 48 H 1.08996 * 108.81821 * 182.63879 * 27 26 25 49 49 H 1.08006 * 119.99937 * 179.97438 * 28 13 12 50 50 H 1.07991 * 120.00329 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8911 2.3963 -1.2126 6 1 1.8910 2.3964 1.2124 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3682 0.0005 10 6 2.0700 -3.5044 -0.1085 11 6 1.4348 -4.7361 -0.2038 12 6 2.1820 -5.8906 -0.3203 13 6 3.5694 -5.8220 -0.3304 14 7 4.3275 -6.9935 -0.4429 15 6 3.8887 -8.0086 -1.2132 16 8 2.7961 -7.9450 -1.7358 17 6 4.7557 -9.2230 -1.4250 18 6 3.8900 -10.3908 -1.9021 19 6 2.4887 -10.2323 -1.3707 20 8 1.5584 -10.1449 -2.1367 21 8 2.2741 -10.1881 -0.0464 22 6 4.4738 -11.6872 -1.4093 23 6 5.9931 -11.5901 -1.1599 24 6 6.7321 -10.7973 -2.2549 25 6 6.2396 -11.1288 -3.6375 26 6 5.1547 -10.1049 -4.0298 27 6 3.8595 -10.4171 -3.4440 28 6 4.2046 -4.5906 -0.2295 29 6 3.4573 -3.4357 -0.1186 30 1 -0.4850 0.8400 -0.0004 31 1 0.3562 -4.7899 -0.1908 32 1 1.6881 -6.8478 -0.3989 33 1 5.1685 -7.0746 0.0336 34 1 5.5135 -9.0017 -2.1766 35 1 5.2417 -9.4905 -0.4868 36 1 1.3584 -10.0850 0.2468 37 1 3.9758 -11.9680 -0.4813 38 1 4.2910 -12.4619 -2.1539 39 1 6.4073 -12.5974 -1.1150 40 1 6.1567 -11.1002 -0.2001 41 1 7.7968 -11.0234 -2.1962 42 1 6.5878 -9.7320 -2.0751 43 1 5.8151 -12.1327 -3.6441 44 1 7.0676 -11.0738 -4.3442 45 1 5.0573 -10.0924 -5.1154 46 1 5.4650 -9.1156 -3.6937 47 1 3.5528 -11.4096 -3.7740 48 1 3.1298 -9.6876 -3.7951 49 1 5.2833 -4.5372 -0.2369 50 1 3.9511 -2.4785 -0.0397 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016481118.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:49 Heat of formation + Delta-G solvation = -133.246705 kcal Electronic energy + Delta-G solvation = -33478.723735 eV Core-core repulsion = 29050.435480 eV Total energy + Delta-G solvation = -4428.288255 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.177 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.71051 -41.13717 -40.18839 -39.75275 -38.09697 -36.98987 -35.43531 -34.18852 -33.88608 -33.39002 -31.89437 -30.84153 -28.91137 -27.32110 -26.51264 -25.25091 -23.97444 -23.36107 -23.23240 -21.87423 -20.77502 -19.93306 -19.76178 -19.03308 -18.84118 -18.50483 -17.85720 -17.41166 -17.00439 -16.56744 -16.36852 -16.10566 -15.76519 -15.65709 -15.49604 -15.41269 -15.07733 -14.83537 -14.58241 -14.34566 -14.18036 -14.01570 -13.83057 -13.63562 -13.35521 -13.32816 -13.16920 -13.10488 -12.73107 -12.51098 -12.41639 -12.40804 -12.23198 -12.08232 -11.62602 -11.49757 -11.46195 -11.37988 -11.25415 -11.17496 -11.08719 -10.82474 -10.58541 -10.46117 -9.86688 -8.63960 -8.46722 -6.14551 0.48918 0.52252 1.36045 1.37145 1.45282 1.55132 1.69501 1.98722 2.18042 2.29498 2.81094 3.14010 3.35990 3.47974 3.50269 3.73284 3.84067 4.03796 4.10132 4.10555 4.15309 4.23408 4.32654 4.39389 4.46916 4.47321 4.49551 4.61004 4.62553 4.67609 4.76827 4.95668 5.00603 5.05500 5.07097 5.12891 5.17276 5.27812 5.29059 5.31724 5.36369 5.42740 5.45419 5.46476 5.54174 5.55195 5.66381 5.69549 5.76790 6.01512 6.15151 6.52393 6.97355 7.09222 7.23594 7.78264 8.76945 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.019902 B = 0.002144 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.564322 B =13059.031296 C =13642.843487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.027 4.027 3 Si 1.022 2.978 4 H -0.246 1.246 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.108 0.892 9 O -0.233 6.233 10 C 0.109 3.891 11 C -0.195 4.195 12 C -0.070 4.070 13 C 0.062 3.938 14 N -0.643 5.643 15 C 0.493 3.507 16 O -0.560 6.560 17 C -0.145 4.145 18 C -0.019 4.019 19 C 0.493 3.507 20 O -0.551 6.551 21 O -0.519 6.519 22 C -0.111 4.111 23 C -0.111 4.111 24 C -0.146 4.146 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.098 4.098 28 C -0.076 4.076 29 C -0.221 4.221 30 H 0.272 0.728 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.428 0.572 34 H 0.162 0.838 35 H 0.141 0.859 36 H 0.416 0.584 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.041 0.959 49 H 0.163 0.837 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.501 -25.808 -1.568 33.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.224 4.224 3 Si 0.841 3.159 4 H -0.168 1.168 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.125 0.875 9 O -0.140 6.140 10 C 0.058 3.942 11 C -0.215 4.215 12 C -0.090 4.090 13 C -0.032 4.032 14 N -0.290 5.290 15 C 0.283 3.717 16 O -0.439 6.439 17 C -0.183 4.183 18 C -0.020 4.020 19 C 0.337 3.663 20 O -0.441 6.441 21 O -0.332 6.332 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.183 4.183 25 C -0.152 4.152 26 C -0.161 4.161 27 C -0.136 4.136 28 C -0.096 4.096 29 C -0.240 4.240 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.144 0.856 33 H 0.267 0.733 34 H 0.179 0.821 35 H 0.159 0.841 36 H 0.276 0.724 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.060 0.940 49 H 0.180 0.820 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 20.525 -25.666 -2.256 32.941 hybrid contribution -1.366 1.128 0.252 1.789 sum 19.159 -24.539 -2.004 31.197 Atomic orbital electron populations 1.70217 1.08229 1.28744 1.49024 1.26675 0.96858 1.02981 0.95886 0.84481 0.78469 0.74553 0.78391 1.16850 1.19676 1.19419 1.21933 0.92733 0.81224 1.52892 0.87457 1.83966 1.36089 1.12630 1.81270 1.19856 0.91909 0.87555 0.94861 1.20243 0.99580 0.90544 1.11146 1.20762 0.93359 0.96868 0.98037 1.17368 0.90111 0.86716 1.08969 1.43122 1.25069 1.13314 1.47484 1.21791 0.87497 0.85381 0.77037 1.90801 1.23354 1.79656 1.50100 1.23018 0.98493 0.88888 1.07880 1.20043 0.86944 0.98205 0.96833 1.23483 0.92796 0.70061 0.79915 1.90655 1.46891 1.47337 1.59229 1.84401 1.38246 1.85232 1.25344 1.21523 0.97970 0.93261 1.02114 1.21948 0.91447 1.01994 0.99416 1.21960 1.00664 1.01733 0.93941 1.21366 0.97648 0.98815 0.97410 1.20613 0.94357 1.00176 1.00987 1.20405 0.99131 1.02551 0.91474 1.20887 1.00706 0.89063 0.98920 1.21144 0.92428 1.00072 1.10401 0.91901 0.87645 0.85632 0.73325 0.82113 0.84136 0.72420 0.90871 0.90710 0.90320 0.90200 0.90334 0.89852 0.91300 0.90639 0.91441 0.91472 0.91290 0.93991 0.81953 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.72 13.67 21.61 0.30 -57.42 16 2 C -0.03 -1.54 5.49 84.83 0.47 -1.08 16 3 Si 1.02 42.73 29.55 68.60 2.03 44.75 16 4 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.41 -23.98 9.48 67.92 0.64 -23.33 16 8 H 0.11 5.59 5.19 -2.91 -0.02 5.58 16 9 O -0.23 -14.32 9.76 -22.94 -0.22 -14.55 16 10 C 0.11 5.58 6.65 22.59 0.15 5.73 16 11 C -0.20 -9.23 9.99 22.38 0.22 -9.01 16 12 C -0.07 -2.82 8.69 22.38 0.19 -2.62 16 13 C 0.06 2.02 6.29 38.16 0.24 2.26 16 14 N -0.64 -14.15 5.33 -303.38 -1.62 -15.77 16 15 C 0.49 11.83 6.73 87.66 0.59 12.42 16 16 O -0.56 -19.53 10.81 21.61 0.23 -19.30 16 17 C -0.14 -1.95 3.29 29.85 0.10 -1.85 16 18 C -0.02 -0.32 0.46 -53.32 -0.02 -0.34 16 19 C 0.49 12.76 3.92 71.24 0.28 13.04 16 20 O -0.55 -19.58 15.61 28.67 0.45 -19.13 16 21 O -0.52 -11.13 12.51 -48.09 -0.60 -11.73 16 22 C -0.11 -1.18 4.72 30.21 0.14 -1.04 16 23 C -0.11 -0.53 5.13 31.39 0.16 -0.37 16 24 C -0.15 -0.65 5.27 30.14 0.16 -0.49 16 25 C -0.12 -0.82 5.61 30.20 0.17 -0.65 16 26 C -0.12 -1.57 5.17 28.74 0.15 -1.42 16 27 C -0.10 -1.86 4.06 28.74 0.12 -1.74 16 28 C -0.08 -2.44 9.96 22.38 0.22 -2.22 16 29 C -0.22 -9.33 9.16 22.37 0.20 -9.12 16 30 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 32 H 0.13 5.07 6.26 -2.91 -0.02 5.05 16 33 H 0.43 5.27 8.83 -92.70 -0.82 4.45 16 34 H 0.16 1.52 2.63 -2.39 -0.01 1.51 16 35 H 0.14 0.94 6.11 -2.39 -0.01 0.92 16 36 H 0.42 7.23 9.10 -74.06 -0.67 6.55 16 37 H 0.07 0.84 7.34 -2.39 -0.02 0.82 16 38 H 0.07 0.78 6.65 -2.39 -0.02 0.76 16 39 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.08 0.21 7.02 -2.39 -0.02 0.20 16 41 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.08 0.31 4.06 -2.39 -0.01 0.30 16 43 H 0.07 0.51 6.99 -2.38 -0.02 0.49 16 44 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 46 H 0.07 0.83 5.69 -2.39 -0.01 0.82 16 47 H 0.07 1.24 7.48 -2.39 -0.02 1.23 16 48 H 0.04 1.17 7.31 -2.39 -0.02 1.15 16 49 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 50 H 0.13 5.51 5.62 -2.91 -0.02 5.50 16 Total: -1.00 -87.81 381.91 4.28 -83.52 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: -0.46 Total: 31.46 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 4.19 Total: -21.84 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -1.32 Total: -73.19 kcal Atomic # 8 Polarization: -64.56 SS G_CDS: -0.14 Total: -64.71 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -87.81 4.28 -83.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016481118.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.725 kcal (2) G-P(sol) polarization free energy of solvation -87.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds