Wall clock time and date at job start Tue Mar 31 2020 05:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47144 * 72.86109 * 3 2 1 5 5 H 1.09003 * 109.47084 * 305.44133 * 4 3 2 6 6 C 1.53003 * 109.47065 * 65.43940 * 4 3 2 7 7 C 1.53005 * 109.47056 * 185.24776 * 6 4 3 8 8 H 1.08994 * 109.46968 * 304.43989 * 7 6 4 9 9 C 1.50706 * 109.46764 * 64.43583 * 7 6 4 10 10 H 1.07995 * 120.00268 * 241.32421 * 9 7 6 11 11 C 1.37877 * 119.99674 * 61.32802 * 9 7 6 12 12 N 1.31513 * 120.00633 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 119.99741 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47151 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47232 * 119.99795 * 13 11 9 16 16 H 1.48501 * 109.47432 * 239.99991 * 13 11 9 17 17 C 1.50697 * 109.46985 * 184.43559 * 7 6 4 18 18 O 1.21252 * 120.00123 * 334.99891 * 17 7 6 19 19 C 1.47167 * 119.99697 * 155.00372 * 17 7 6 20 20 C 1.39854 * 120.17341 * 359.72073 * 19 17 7 21 21 C 1.37884 * 119.82208 * 179.81324 * 20 19 17 22 22 C 1.38402 * 120.17694 * 0.44315 * 21 20 19 23 23 C 1.38401 * 120.34618 * 359.79139 * 22 21 20 24 24 C 1.37884 * 120.17472 * 359.97438 * 23 22 21 25 25 C 1.50702 * 109.47355 * 185.43956 * 4 3 2 26 26 O 1.21249 * 119.99829 * 270.00111 * 25 4 3 27 27 C 1.47165 * 119.99651 * 89.99560 * 25 4 3 28 28 C 1.39850 * 120.16901 * 180.02562 * 27 25 4 29 29 C 1.37890 * 119.82304 * 180.02562 * 28 27 25 30 30 C 1.38403 * 120.17442 * 0.02562 * 29 28 27 31 31 C 1.38409 * 120.34601 * 0.23717 * 30 29 28 32 32 C 1.37891 * 120.17200 * 359.48508 * 31 30 29 33 33 H 1.08997 * 109.47873 * 312.85763 * 3 2 1 34 34 H 1.09002 * 109.46651 * 192.85600 * 3 2 1 35 35 H 1.09002 * 109.47229 * 305.25057 * 6 4 3 36 36 H 1.09000 * 109.47078 * 65.25158 * 6 4 3 37 37 H 0.96997 * 120.00583 * 180.02562 * 12 11 9 38 38 H 1.08001 * 120.08670 * 0.02562 * 20 19 17 39 39 H 1.08005 * 119.91296 * 180.21068 * 21 20 19 40 40 H 1.07998 * 119.82747 * 179.76708 * 22 21 20 41 41 H 1.07996 * 119.91557 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.09332 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.08715 * 0.02562 * 28 27 25 44 44 H 1.08003 * 119.91030 * 179.97438 * 29 28 27 45 45 H 1.07997 * 119.82517 * 179.97438 * 30 29 28 46 46 H 1.07998 * 119.90688 * 179.72005 * 31 30 29 47 47 H 1.07992 * 120.08670 * 180.23699 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.4242 -1.3784 5 1 2.6779 -1.3840 -1.6489 6 6 2.7224 0.6288 -2.4156 7 6 3.1168 0.1429 -3.8118 8 1 4.1809 -0.0927 -3.8273 9 6 2.3240 -1.0915 -4.1566 10 1 2.8332 -2.0241 -4.3491 11 6 0.9483 -1.0300 -4.2264 12 7 0.3280 0.1057 -3.9916 13 14 -0.0344 -2.5597 -4.6545 14 1 0.8929 -3.6993 -4.8708 15 1 -0.9610 -2.8810 -3.5395 16 1 -0.8163 -2.3153 -5.8931 17 6 2.8269 1.2243 -4.8204 18 8 1.9770 2.0575 -4.5887 19 6 3.5752 1.2691 -6.0869 20 6 4.5602 0.3133 -6.3554 21 6 5.2542 0.3597 -7.5460 22 6 4.9847 1.3542 -8.4701 23 6 4.0148 2.3065 -8.2096 24 6 3.3087 2.2708 -7.0258 25 6 4.6192 -0.5529 -1.3409 26 8 5.3165 0.4041 -1.6020 27 6 5.2387 -1.8401 -0.9870 28 6 6.6313 -1.9634 -0.9505 29 6 7.2042 -3.1729 -0.6185 30 6 6.4048 -4.2633 -0.3225 31 6 5.0259 -4.1507 -0.3617 32 6 4.4378 -2.9464 -0.6863 33 1 2.9718 -0.6981 0.7533 34 1 2.9708 1.0028 0.2287 35 1 1.6449 0.7892 -2.3775 36 1 3.2370 1.5646 -2.1978 37 1 -0.6398 0.1489 -4.0404 38 1 4.7743 -0.4611 -5.6337 39 1 6.0129 -0.3797 -7.7564 40 1 5.5343 1.3874 -9.3991 41 1 3.8104 3.0796 -8.9354 42 1 2.5525 3.0149 -6.8237 43 1 7.2563 -1.1135 -1.1816 44 1 8.2795 -3.2698 -0.5903 45 1 6.8595 -5.2081 -0.0636 46 1 4.4089 -5.0073 -0.1338 47 1 3.3618 -2.8591 -0.7128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018116505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:58 Heat of formation + Delta-G solvation = 1.837122 kcal Electronic energy + Delta-G solvation = -32121.174324 eV Core-core repulsion = 28006.052663 eV Total energy + Delta-G solvation = -4115.121661 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.10157 -39.03525 -38.14638 -37.13824 -36.35208 -34.42555 -32.81250 -31.20419 -30.94943 -30.89523 -30.39384 -29.58484 -26.16374 -24.89006 -24.06104 -22.84212 -22.32240 -21.87267 -20.92313 -18.98834 -18.68926 -17.55637 -17.04315 -16.61743 -16.07623 -15.62811 -15.27662 -15.03648 -14.77283 -14.70029 -14.46092 -14.09588 -14.06076 -13.80405 -13.62147 -13.44985 -13.36167 -13.06237 -12.97486 -12.52984 -12.48224 -12.30650 -12.11368 -11.95680 -11.66235 -11.57984 -11.40516 -11.12764 -11.08361 -11.00953 -10.84134 -10.67181 -10.59896 -10.32108 -10.21989 -9.56213 -9.26321 -9.10109 -8.97438 -8.90922 -8.63092 -8.49772 -8.30748 -8.02903 -6.06698 -4.24027 0.79597 1.39610 1.48207 1.87509 2.63155 3.21943 3.31287 3.31843 3.33001 3.33301 3.65780 3.89763 4.20541 4.31694 4.58599 4.61146 4.85458 4.93240 5.05734 5.07938 5.20312 5.29187 5.35439 5.36834 5.40474 5.45516 5.45991 5.58009 5.61351 5.69463 5.86723 5.93205 5.97357 5.99013 6.16860 6.32046 6.37052 6.38653 6.44092 6.44732 6.55766 6.65568 6.78133 6.87057 6.90489 6.98146 7.04957 7.11444 7.31315 7.44300 7.61151 7.83930 7.96734 8.11365 8.15703 8.73101 9.15585 9.42607 10.89652 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.007518 B = 0.004328 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3723.590979 B = 6468.159867 C = 7925.043751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.212 3.788 3 C -0.013 4.013 4 C -0.119 4.119 5 H 0.117 0.883 6 C -0.096 4.096 7 C 0.016 3.984 8 H 0.040 0.960 9 C -0.527 4.527 10 H 0.064 0.936 11 C 0.071 3.929 12 N -0.840 5.840 13 Si 0.878 3.122 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.284 1.284 17 C 0.398 3.602 18 O -0.439 6.439 19 C -0.133 4.133 20 C -0.068 4.068 21 C -0.140 4.140 22 C -0.114 4.114 23 C -0.140 4.140 24 C -0.080 4.080 25 C 0.411 3.589 26 O -0.446 6.446 27 C -0.158 4.158 28 C -0.065 4.065 29 C -0.138 4.138 30 C -0.096 4.096 31 C -0.135 4.135 32 C -0.067 4.067 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.038 0.962 37 H 0.264 0.736 38 H 0.133 0.867 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.132 0.868 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.126 0.874 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.302 -5.225 4.277 14.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.105 4.105 3 C -0.054 4.054 4 C -0.139 4.139 5 H 0.135 0.865 6 C -0.134 4.134 7 C -0.003 4.003 8 H 0.058 0.942 9 C -0.564 4.564 10 H 0.082 0.918 11 C -0.136 4.136 12 N -0.474 5.474 13 Si 0.705 3.295 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.210 1.210 17 C 0.274 3.726 18 O -0.312 6.312 19 C -0.134 4.134 20 C -0.086 4.086 21 C -0.158 4.158 22 C -0.132 4.132 23 C -0.158 4.158 24 C -0.098 4.098 25 C 0.287 3.713 26 O -0.320 6.320 27 C -0.159 4.159 28 C -0.084 4.084 29 C -0.156 4.156 30 C -0.114 4.114 31 C -0.153 4.153 32 C -0.085 4.085 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.151 0.849 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.149 0.851 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.144 0.856 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.304 -4.153 4.286 12.782 hybrid contribution -0.209 -1.165 -0.688 1.369 sum 11.095 -5.318 3.598 12.819 Atomic orbital electron populations 1.81161 1.12889 1.08274 1.08203 1.28701 0.94864 0.93637 0.93346 1.19120 0.82807 1.04841 0.98583 1.21675 0.92375 1.05237 0.94595 0.86549 1.21510 1.05224 0.93434 0.93207 1.19066 0.96120 0.93926 0.91202 0.94218 1.20762 0.90825 0.93900 1.50915 0.91761 1.25057 0.98035 0.95744 0.94756 1.70002 1.09180 1.23623 1.44603 0.86734 0.80596 0.83733 0.78393 1.19466 1.20792 1.20959 1.22930 0.79914 0.83657 0.86070 1.90379 1.26147 1.36523 1.78171 1.21215 0.98133 0.95929 0.98120 1.21575 0.93539 0.97019 0.96472 1.21079 1.00866 0.99118 0.94741 1.21176 0.97877 0.95251 0.98916 1.21009 0.97679 0.99686 0.97466 1.21442 0.97890 0.97657 0.92843 1.22484 0.91327 0.85956 0.71495 1.90475 1.65747 1.40163 1.35647 1.20690 0.94277 0.96251 1.04683 1.21439 0.94066 0.97791 0.95063 1.21101 0.99947 0.93079 1.01431 1.21361 0.93988 0.98484 0.97596 1.21155 0.94949 0.97823 1.01343 1.21638 1.00629 0.91828 0.94414 0.87946 0.87488 0.87040 0.94331 0.92574 0.84905 0.86348 0.86691 0.86519 0.85664 0.85060 0.85842 0.86056 0.85632 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.77 18.54 42.15 0.78 -7.99 16 2 C 0.21 3.68 14.34 -20.76 -0.30 3.39 16 3 C -0.01 -0.18 5.16 -29.52 -0.15 -0.33 16 4 C -0.12 -1.98 1.50 -91.77 -0.14 -2.12 16 5 H 0.12 2.02 5.52 -51.93 -0.29 1.73 16 6 C -0.10 -2.04 3.07 -26.73 -0.08 -2.13 16 7 C 0.02 0.36 1.61 -92.92 -0.15 0.21 16 8 H 0.04 0.85 5.56 -51.93 -0.29 0.56 16 9 C -0.53 -12.60 7.57 -34.44 -0.26 -12.87 16 10 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 11 C 0.07 1.82 5.13 -17.82 -0.09 1.72 16 12 N -0.84 -22.88 9.30 55.43 0.52 -22.37 16 13 Si 0.88 20.30 29.54 -169.99 -5.02 15.28 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 C 0.40 9.56 5.54 -30.69 -0.17 9.39 16 18 O -0.44 -11.73 14.56 5.58 0.08 -11.65 16 19 C -0.13 -2.80 5.87 -105.06 -0.62 -3.42 16 20 C -0.07 -1.25 9.37 -39.11 -0.37 -1.62 16 21 C -0.14 -2.16 10.03 -39.65 -0.40 -2.56 16 22 C -0.11 -1.66 10.04 -39.46 -0.40 -2.06 16 23 C -0.14 -2.21 10.03 -39.65 -0.40 -2.61 16 24 C -0.08 -1.53 9.60 -39.10 -0.38 -1.91 16 25 C 0.41 6.43 5.24 -30.68 -0.16 6.27 16 26 O -0.45 -7.98 15.66 5.58 0.09 -7.89 16 27 C -0.16 -2.11 5.87 -105.07 -0.62 -2.73 16 28 C -0.07 -0.79 9.60 -39.11 -0.38 -1.17 16 29 C -0.14 -1.37 10.03 -39.65 -0.40 -1.76 16 30 C -0.10 -0.90 10.04 -39.46 -0.40 -1.29 16 31 C -0.13 -1.37 10.03 -39.65 -0.40 -1.77 16 32 C -0.07 -0.80 9.37 -39.10 -0.37 -1.16 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.11 2.75 5.05 -51.93 -0.26 2.49 16 36 H 0.04 0.82 7.66 -51.93 -0.40 0.43 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.13 2.41 6.47 -52.49 -0.34 2.07 16 39 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 40 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.13 2.43 7.65 -52.49 -0.40 2.03 16 43 H 0.13 1.55 7.65 -52.49 -0.40 1.15 16 44 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 46 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.14 1.56 6.36 -52.49 -0.33 1.22 16 LS Contribution 400.63 15.07 6.04 6.04 Total: -1.00 -31.94 400.63 -9.76 -41.70 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.64 Total: 7.40 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -6.60 Total: -20.51 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 1.30 Total: -30.36 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.17 Total: -19.54 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.94 -9.76 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018116505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.536 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds