Wall clock time and date at job start Tue Mar 31 2020 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47144 * 72.86109 * 3 2 1 5 5 H 1.09003 * 109.47084 * 305.44133 * 4 3 2 6 6 C 1.53003 * 109.47065 * 65.43940 * 4 3 2 7 7 C 1.53005 * 109.47056 * 185.24776 * 6 4 3 8 8 H 1.08994 * 109.46968 * 304.43989 * 7 6 4 9 9 C 1.50706 * 109.46764 * 64.43583 * 7 6 4 10 10 H 1.07995 * 120.00268 * 241.32421 * 9 7 6 11 11 C 1.37877 * 119.99674 * 61.32802 * 9 7 6 12 12 N 1.31513 * 120.00633 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 119.99741 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47151 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47232 * 119.99795 * 13 11 9 16 16 H 1.48501 * 109.47432 * 239.99991 * 13 11 9 17 17 C 1.50697 * 109.46985 * 184.43559 * 7 6 4 18 18 O 1.21252 * 120.00123 * 334.99891 * 17 7 6 19 19 C 1.47167 * 119.99697 * 155.00372 * 17 7 6 20 20 C 1.39854 * 120.17341 * 359.72073 * 19 17 7 21 21 C 1.37884 * 119.82208 * 179.81324 * 20 19 17 22 22 C 1.38402 * 120.17694 * 0.44315 * 21 20 19 23 23 C 1.38401 * 120.34618 * 359.79139 * 22 21 20 24 24 C 1.37884 * 120.17472 * 359.97438 * 23 22 21 25 25 C 1.50702 * 109.47355 * 185.43956 * 4 3 2 26 26 O 1.21249 * 119.99829 * 270.00111 * 25 4 3 27 27 C 1.47165 * 119.99651 * 89.99560 * 25 4 3 28 28 C 1.39850 * 120.16901 * 180.02562 * 27 25 4 29 29 C 1.37890 * 119.82304 * 180.02562 * 28 27 25 30 30 C 1.38403 * 120.17442 * 0.02562 * 29 28 27 31 31 C 1.38409 * 120.34601 * 0.23717 * 30 29 28 32 32 C 1.37891 * 120.17200 * 359.48508 * 31 30 29 33 33 H 1.08997 * 109.47873 * 312.85763 * 3 2 1 34 34 H 1.09002 * 109.46651 * 192.85600 * 3 2 1 35 35 H 1.09002 * 109.47229 * 305.25057 * 6 4 3 36 36 H 1.09000 * 109.47078 * 65.25158 * 6 4 3 37 37 H 0.96997 * 120.00583 * 180.02562 * 12 11 9 38 38 H 1.08001 * 120.08670 * 0.02562 * 20 19 17 39 39 H 1.08005 * 119.91296 * 180.21068 * 21 20 19 40 40 H 1.07998 * 119.82747 * 179.76708 * 22 21 20 41 41 H 1.07996 * 119.91557 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.09332 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.08715 * 0.02562 * 28 27 25 44 44 H 1.08003 * 119.91030 * 179.97438 * 29 28 27 45 45 H 1.07997 * 119.82517 * 179.97438 * 30 29 28 46 46 H 1.07998 * 119.90688 * 179.72005 * 31 30 29 47 47 H 1.07992 * 120.08670 * 180.23699 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.4242 -1.3784 5 1 2.6779 -1.3840 -1.6489 6 6 2.7224 0.6288 -2.4156 7 6 3.1168 0.1429 -3.8118 8 1 4.1809 -0.0927 -3.8273 9 6 2.3240 -1.0915 -4.1566 10 1 2.8332 -2.0241 -4.3491 11 6 0.9483 -1.0300 -4.2264 12 7 0.3280 0.1057 -3.9916 13 14 -0.0344 -2.5597 -4.6545 14 1 0.8929 -3.6993 -4.8708 15 1 -0.9610 -2.8810 -3.5395 16 1 -0.8163 -2.3153 -5.8931 17 6 2.8269 1.2243 -4.8204 18 8 1.9770 2.0575 -4.5887 19 6 3.5752 1.2691 -6.0869 20 6 4.5602 0.3133 -6.3554 21 6 5.2542 0.3597 -7.5460 22 6 4.9847 1.3542 -8.4701 23 6 4.0148 2.3065 -8.2096 24 6 3.3087 2.2708 -7.0258 25 6 4.6192 -0.5529 -1.3409 26 8 5.3165 0.4041 -1.6020 27 6 5.2387 -1.8401 -0.9870 28 6 6.6313 -1.9634 -0.9505 29 6 7.2042 -3.1729 -0.6185 30 6 6.4048 -4.2633 -0.3225 31 6 5.0259 -4.1507 -0.3617 32 6 4.4378 -2.9464 -0.6863 33 1 2.9718 -0.6981 0.7533 34 1 2.9708 1.0028 0.2287 35 1 1.6449 0.7892 -2.3775 36 1 3.2370 1.5646 -2.1978 37 1 -0.6398 0.1489 -4.0404 38 1 4.7743 -0.4611 -5.6337 39 1 6.0129 -0.3797 -7.7564 40 1 5.5343 1.3874 -9.3991 41 1 3.8104 3.0796 -8.9354 42 1 2.5525 3.0149 -6.8237 43 1 7.2563 -1.1135 -1.1816 44 1 8.2795 -3.2698 -0.5903 45 1 6.8595 -5.2081 -0.0636 46 1 4.4089 -5.0073 -0.1338 47 1 3.3618 -2.8591 -0.7128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000018116505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:57 Heat of formation + Delta-G solvation = -13.032850 kcal Electronic energy + Delta-G solvation = -32121.819134 eV Core-core repulsion = 28006.052663 eV Total energy + Delta-G solvation = -4115.766472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.33543 -40.51759 -39.18220 -38.69092 -37.80731 -36.10709 -34.46254 -32.62792 -32.08052 -31.75173 -31.72379 -31.11904 -27.67680 -26.40939 -25.58970 -23.99239 -23.47034 -23.05120 -22.26357 -20.47542 -20.14382 -18.78830 -18.36832 -18.00247 -17.71556 -16.90741 -16.51261 -16.37188 -16.29145 -16.15661 -15.68232 -15.44440 -15.29016 -15.08830 -14.94843 -14.82841 -14.58660 -14.35317 -14.27880 -14.08829 -14.03574 -13.53311 -13.51974 -13.31599 -13.22667 -12.95305 -12.88687 -12.65243 -12.47067 -12.45402 -12.30658 -12.10444 -11.92511 -11.83956 -11.65395 -11.31498 -11.11083 -10.60425 -10.42184 -9.86438 -9.83119 -9.79086 -9.77554 -9.71902 -8.03769 -6.23948 -0.16077 0.03526 0.53793 0.58434 1.33851 1.39542 1.47417 1.52299 1.92139 1.95931 2.04347 2.40199 2.96432 3.01644 3.06217 3.22722 3.38244 3.63010 4.02574 4.03738 4.09231 4.15334 4.17216 4.19115 4.28574 4.33746 4.42054 4.55210 4.59847 4.63422 4.64106 4.68745 4.77920 4.84728 4.93541 5.00638 5.08222 5.13994 5.22190 5.31034 5.32317 5.44235 5.55647 5.56444 5.58393 5.62704 5.64585 5.65665 5.74296 6.04362 6.11169 6.11484 6.24282 6.68325 6.73699 6.77186 7.33723 7.44414 8.89712 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.007518 B = 0.004328 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3723.590979 B = 6468.159867 C = 7925.043751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.234 3.766 3 C -0.010 4.010 4 C -0.114 4.114 5 H 0.111 0.889 6 C -0.089 4.089 7 C 0.016 3.984 8 H 0.046 0.954 9 C -0.513 4.513 10 H 0.071 0.929 11 C 0.030 3.970 12 N -0.869 5.869 13 Si 0.926 3.074 14 H -0.249 1.249 15 H -0.290 1.290 16 H -0.296 1.296 17 C 0.388 3.612 18 O -0.484 6.484 19 C -0.175 4.175 20 C -0.078 4.078 21 C -0.133 4.133 22 C -0.096 4.096 23 C -0.136 4.136 24 C -0.101 4.101 25 C 0.420 3.580 26 O -0.478 6.478 27 C -0.179 4.179 28 C -0.076 4.076 29 C -0.136 4.136 30 C -0.086 4.086 31 C -0.137 4.137 32 C -0.075 4.075 33 H 0.153 0.847 34 H 0.124 0.876 35 H 0.077 0.923 36 H 0.024 0.976 37 H 0.250 0.750 38 H 0.128 0.872 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.149 0.851 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.150 0.850 45 H 0.155 0.845 46 H 0.149 0.851 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.946 -8.222 3.391 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.082 4.082 3 C -0.050 4.050 4 C -0.134 4.134 5 H 0.128 0.872 6 C -0.128 4.128 7 C -0.004 4.004 8 H 0.065 0.935 9 C -0.550 4.550 10 H 0.089 0.911 11 C -0.174 4.174 12 N -0.504 5.504 13 Si 0.753 3.247 14 H -0.172 1.172 15 H -0.217 1.217 16 H -0.223 1.223 17 C 0.268 3.732 18 O -0.361 6.361 19 C -0.176 4.176 20 C -0.097 4.097 21 C -0.151 4.151 22 C -0.114 4.114 23 C -0.153 4.153 24 C -0.120 4.120 25 C 0.300 3.700 26 O -0.355 6.355 27 C -0.179 4.179 28 C -0.094 4.094 29 C -0.153 4.153 30 C -0.104 4.104 31 C -0.155 4.155 32 C -0.094 4.094 33 H 0.171 0.829 34 H 0.142 0.858 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.060 0.940 38 H 0.146 0.854 39 H 0.175 0.825 40 H 0.180 0.820 41 H 0.167 0.833 42 H 0.124 0.876 43 H 0.144 0.856 44 H 0.168 0.832 45 H 0.172 0.828 46 H 0.166 0.834 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.977 -7.187 3.400 16.956 hybrid contribution -1.170 -0.258 -0.505 1.300 sum 13.806 -7.445 2.895 15.951 Atomic orbital electron populations 1.81164 1.14880 1.10480 1.10190 1.29375 0.95552 0.91771 0.91541 1.19407 0.80235 1.07240 0.98119 1.21527 0.93909 1.03145 0.94815 0.87154 1.21305 1.02729 0.94479 0.94243 1.19094 0.96180 0.93374 0.91705 0.93535 1.20932 0.90585 0.94395 1.49127 0.91067 1.25625 0.99124 0.97391 0.95212 1.70223 1.08157 1.25351 1.46709 0.85966 0.79524 0.82089 0.77084 1.17169 1.21661 1.22280 1.23446 0.79159 0.83059 0.87567 1.90341 1.28246 1.38207 1.79328 1.21101 1.00170 0.98576 0.97778 1.21634 0.93572 0.96391 0.98055 1.21513 1.00509 0.99892 0.93179 1.21734 0.96411 0.93267 0.99995 1.21382 0.96935 1.00720 0.96310 1.21482 0.98750 0.97306 0.94438 1.22450 0.90259 0.86786 0.70551 1.90467 1.65950 1.41457 1.37588 1.20452 0.95055 0.95232 1.07206 1.21532 0.93467 0.98832 0.95598 1.21421 1.01501 0.92184 1.00237 1.21791 0.93622 0.99515 0.95435 1.21476 0.95849 0.97671 1.00476 1.21730 1.00631 0.92239 0.94758 0.82946 0.85804 0.90479 0.95767 0.94040 0.85392 0.82549 0.81950 0.83291 0.87592 0.85621 0.83198 0.82760 0.83357 0.84565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -21.03 18.54 20.01 0.37 -20.66 16 2 C 0.23 8.39 14.34 89.44 1.28 9.67 16 3 C -0.01 -0.28 5.16 28.79 0.15 -0.13 16 4 C -0.11 -3.88 1.50 -11.54 -0.02 -3.89 16 5 H 0.11 3.90 5.52 -2.39 -0.01 3.89 16 6 C -0.09 -4.05 3.07 30.60 0.09 -3.96 16 7 C 0.02 0.74 1.61 -12.28 -0.02 0.72 16 8 H 0.05 2.09 5.56 -2.39 -0.01 2.07 16 9 C -0.51 -25.19 7.57 25.60 0.19 -24.99 16 10 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 11 C 0.03 1.58 5.13 84.65 0.43 2.02 16 12 N -0.87 -50.31 9.30 21.45 0.20 -50.11 16 13 Si 0.93 42.60 29.54 68.60 2.03 44.62 16 14 H -0.25 -10.44 7.11 99.48 0.71 -9.74 16 15 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 16 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 17 C 0.39 19.88 5.54 28.03 0.16 20.04 16 18 O -0.48 -28.12 14.56 -2.94 -0.04 -28.16 16 19 C -0.18 -7.66 5.87 -20.15 -0.12 -7.78 16 20 C -0.08 -2.86 9.37 22.58 0.21 -2.65 16 21 C -0.13 -3.67 10.03 22.22 0.22 -3.45 16 22 C -0.10 -2.39 10.04 22.35 0.22 -2.16 16 23 C -0.14 -3.98 10.03 22.22 0.22 -3.76 16 24 C -0.10 -3.99 9.60 22.58 0.22 -3.78 16 25 C 0.42 13.23 5.24 28.03 0.15 13.38 16 26 O -0.48 -17.57 15.66 -2.93 -0.05 -17.62 16 27 C -0.18 -4.57 5.87 -20.15 -0.12 -4.68 16 28 C -0.08 -1.71 9.60 22.58 0.22 -1.49 16 29 C -0.14 -2.22 10.03 22.23 0.22 -2.00 16 30 C -0.09 -1.23 10.04 22.35 0.22 -1.00 16 31 C -0.14 -2.30 10.03 22.23 0.22 -2.07 16 32 C -0.08 -1.65 9.37 22.58 0.21 -1.43 16 33 H 0.15 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.08 4.08 5.05 -2.39 -0.01 4.07 16 36 H 0.02 1.11 7.66 -2.39 -0.02 1.09 16 37 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.13 4.66 6.47 -2.91 -0.02 4.64 16 39 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 41 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 42 H 0.11 4.44 7.65 -2.91 -0.02 4.42 16 43 H 0.13 2.89 7.65 -2.91 -0.02 2.87 16 44 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 45 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 46 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 47 H 0.14 2.91 6.36 -2.91 -0.02 2.89 16 Total: -1.00 -77.05 400.63 7.90 -69.15 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 1.01 Total: 26.18 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 4.38 Total: -23.40 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: 0.57 Total: -70.77 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -0.09 Total: -45.78 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -77.05 7.90 -69.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018116505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.116 kcal (2) G-P(sol) polarization free energy of solvation -77.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds