Wall clock time and date at job start Tue Mar 31 2020 05:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99905 * 2 1 4 4 H 1.48496 * 109.47376 * 270.00039 * 3 2 1 5 5 H 1.48504 * 109.47075 * 30.00644 * 3 2 1 6 6 H 1.48500 * 109.47124 * 150.00231 * 3 2 1 7 7 C 1.37875 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99638 * 0.02562 * 7 2 1 10 10 N 1.46910 * 109.46507 * 179.97438 * 9 7 2 11 11 C 1.46959 * 110.99583 * 170.00041 * 10 9 7 12 12 C 1.53051 * 109.36152 * 183.18898 * 11 10 9 13 13 N 1.46952 * 109.36541 * 301.59735 * 12 11 10 14 14 C 1.46900 * 110.99932 * 183.19066 * 13 12 11 15 15 H 1.08995 * 110.66708 * 298.51800 * 14 13 12 16 16 C 1.54234 * 110.71035 * 175.64936 * 14 13 12 17 17 C 1.51311 * 103.55410 * 241.77585 * 16 14 13 18 18 O 1.21235 * 125.39512 * 179.79266 * 17 16 14 19 19 N 1.33879 * 109.21022 * 359.76992 * 17 16 14 20 20 C 1.40279 * 122.76441 * 180.02562 * 19 17 16 21 21 C 1.38806 * 120.04315 * 112.45960 * 20 19 17 22 22 C 1.38119 * 119.96185 * 179.76577 * 21 20 19 23 23 C 1.38473 * 120.03967 * 0.50995 * 22 21 20 24 24 F 1.35090 * 119.96246 * 179.76352 * 23 22 21 25 25 C 1.38480 * 120.07760 * 359.74540 * 23 22 21 26 26 C 1.38116 * 120.04364 * 359.97438 * 25 23 22 27 27 C 1.33882 * 114.47192 * 359.97438 * 19 17 16 28 28 O 1.21229 * 125.39306 * 179.97438 * 27 19 17 29 29 C 1.46952 * 110.88230 * 59.31921 * 13 12 11 30 30 C 1.46951 * 110.99884 * 293.79626 * 10 9 7 31 31 H 0.96999 * 119.99626 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47372 * 60.00442 * 9 7 2 33 33 H 1.08993 * 109.47453 * 299.99425 * 9 7 2 34 34 H 1.09002 * 109.49241 * 63.22025 * 11 10 9 35 35 H 1.09006 * 109.48878 * 303.15234 * 11 10 9 36 36 H 1.09008 * 109.48549 * 181.63107 * 12 11 10 37 37 H 1.09002 * 109.49126 * 61.56875 * 12 11 10 38 38 H 1.08993 * 110.80267 * 123.16224 * 16 14 13 39 39 H 1.08998 * 110.41013 * 0.19527 * 16 14 13 40 40 H 1.08002 * 120.01706 * 0.02562 * 21 20 19 41 41 H 1.07994 * 119.97981 * 180.25529 * 22 21 20 42 42 H 1.08008 * 119.97938 * 180.02562 * 25 23 22 43 43 H 1.07999 * 120.02483 * 180.02562 * 26 25 23 44 44 H 1.09002 * 109.48774 * 60.64902 * 29 13 12 45 45 H 1.08997 * 109.48882 * 180.70950 * 29 13 12 46 46 H 1.09000 * 109.49643 * 296.77668 * 30 10 9 47 47 H 1.09000 * 109.49279 * 56.85021 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0027 11 6 1.5209 -4.8942 0.2344 12 6 2.5564 -6.0190 0.3051 13 7 3.3194 -6.0584 -0.9502 14 6 4.2740 -7.1750 -0.9512 15 1 4.9978 -7.0630 -0.1440 16 6 4.9936 -7.2763 -2.3116 17 6 4.5906 -8.6413 -2.8252 18 8 4.9385 -9.1252 -3.8809 19 7 3.7895 -9.2304 -1.9288 20 6 3.2489 -10.5107 -2.1194 21 6 3.6543 -11.5636 -1.3108 22 6 3.1174 -12.8225 -1.4968 23 6 2.1831 -13.0370 -2.4961 24 9 1.6625 -14.2699 -2.6797 25 6 1.7814 -11.9889 -3.3071 26 6 2.3118 -10.7274 -3.1203 27 6 3.5476 -8.4973 -0.8349 28 8 2.8519 -8.8367 0.0981 29 6 4.0041 -4.7800 -1.1874 30 6 2.9686 -3.6551 -1.2580 31 1 -0.4849 0.8401 0.0004 32 1 0.6247 -2.5563 -0.8920 33 1 0.6241 -2.5575 0.8880 34 1 0.8253 -5.0910 -0.5814 35 1 0.9733 -4.8444 1.1756 36 1 2.0484 -6.9722 0.4520 37 1 3.2355 -5.8363 1.1379 38 1 6.0743 -7.2184 -2.1831 39 1 4.6439 -6.4943 -2.9857 40 1 4.3860 -11.3976 -0.5339 41 1 3.4295 -13.6410 -0.8652 42 1 1.0522 -12.1578 -4.0858 43 1 1.9981 -9.9101 -3.7528 44 1 4.6997 -4.5832 -0.3716 45 1 4.5517 -4.8299 -2.1285 46 1 2.2896 -3.8379 -2.0908 47 1 3.4766 -2.7019 -1.4050 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019371368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:29 Heat of formation + Delta-G solvation = -46.023214 kcal Electronic energy + Delta-G solvation = -32206.527828 eV Core-core repulsion = 27690.854313 eV Total energy + Delta-G solvation = -4515.673515 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.34345 -42.67118 -39.51069 -39.02452 -38.40898 -36.27649 -35.38777 -32.97971 -31.96475 -31.73484 -30.62086 -29.34798 -27.89226 -26.10433 -24.64210 -23.89513 -23.46815 -23.09542 -22.02500 -21.42550 -20.18159 -19.39264 -18.40916 -18.00057 -17.73647 -16.83603 -16.59881 -16.35532 -16.01158 -15.84481 -15.47059 -14.94322 -14.80805 -14.66832 -14.64420 -14.34128 -14.25472 -14.12634 -13.88331 -13.72987 -13.56713 -13.47863 -13.29121 -12.85987 -12.63174 -12.27744 -12.05327 -11.81027 -11.70197 -11.27660 -11.17347 -10.90501 -10.82072 -10.70233 -10.64867 -10.53608 -10.41165 -10.13194 -9.77425 -9.66235 -9.21045 -9.06253 -8.54552 -8.45283 -7.30453 -6.05977 -4.07891 0.46054 0.69344 1.12411 1.97450 2.25592 2.95212 3.28823 3.35565 3.38989 3.60767 3.73865 3.74351 3.87163 4.12061 4.22502 4.31756 4.38799 4.61415 4.67815 4.71652 4.82150 4.86570 4.98564 5.19116 5.27052 5.29763 5.33577 5.42692 5.53809 5.57164 5.59435 5.61051 5.73254 5.74039 5.76493 5.92395 6.12728 6.29326 6.31851 6.37502 6.46111 6.56436 6.82388 6.90345 6.92745 7.26575 7.30897 7.41516 7.75003 8.03938 8.14454 8.49266 8.99360 9.56525 11.04798 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.001982 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.759797 B =14125.063614 C =14610.782256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.058 3.942 12 C 0.049 3.951 13 N -0.521 5.521 14 C 0.050 3.950 15 H 0.099 0.901 16 C -0.151 4.151 17 C 0.535 3.465 18 O -0.472 6.472 19 N -0.528 5.528 20 C 0.102 3.898 21 C -0.071 4.071 22 C -0.143 4.143 23 C 0.109 3.891 24 F -0.135 7.135 25 C -0.142 4.142 26 C -0.068 4.068 27 C 0.541 3.459 28 O -0.459 6.459 29 C 0.055 3.945 30 C 0.067 3.933 31 H 0.261 0.739 32 H -0.008 1.008 33 H 0.030 0.970 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.139 0.861 44 H 0.048 0.952 45 H 0.077 0.923 46 H 0.031 0.969 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.804 -23.732 -4.954 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.071 4.071 12 C -0.079 4.079 13 N -0.249 5.249 14 C -0.062 4.062 15 H 0.117 0.883 16 C -0.191 4.191 17 C 0.325 3.675 18 O -0.342 6.342 19 N -0.269 5.269 20 C 0.013 3.987 21 C -0.090 4.090 22 C -0.162 4.162 23 C 0.090 3.910 24 F -0.113 7.113 25 C -0.161 4.161 26 C -0.087 4.087 27 C 0.330 3.670 28 O -0.327 6.327 29 C -0.072 4.072 30 C -0.062 4.062 31 H 0.071 0.929 32 H 0.010 0.990 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.144 0.856 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.157 0.843 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.049 0.951 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.427 -24.086 -4.999 26.344 hybrid contribution 0.159 0.706 -0.007 0.724 sum 9.586 -23.380 -5.006 25.760 Atomic orbital electron populations 1.69961 1.06073 1.26815 1.50837 1.25002 0.94869 0.99347 0.95441 0.86501 0.79780 0.83127 0.78014 1.20736 1.21283 1.19804 1.21132 0.93409 0.89908 1.50232 0.91898 1.19706 0.90017 0.87197 0.96211 1.62316 1.28301 1.02818 1.32963 1.22059 0.94620 0.89604 1.00788 1.22482 0.96440 1.00210 0.88721 1.62339 1.23617 1.02163 1.36751 1.22332 0.94733 0.90504 0.98581 0.88321 1.22691 1.03544 0.95439 0.97425 1.20940 0.76151 0.87594 0.82806 1.90796 1.53425 1.69146 1.20868 1.44417 1.45379 1.15601 1.21534 1.17662 0.97789 0.83992 0.99217 1.20961 0.98715 0.90810 0.98554 1.21011 0.98126 0.98201 0.98889 1.17761 0.95847 0.80324 0.97116 1.91524 1.85204 1.40016 1.94602 1.21048 1.02423 0.91595 1.01038 1.21024 0.93662 0.97346 0.96651 1.20815 0.79645 0.86156 0.80427 1.90757 1.34718 1.74559 1.32630 1.22415 0.96657 0.87463 1.00707 1.21997 0.95405 0.97170 0.91581 0.92892 0.99024 0.95153 0.95113 0.90651 0.89250 0.93584 0.85561 0.84568 0.84492 0.83753 0.83678 0.84285 0.93380 0.90480 0.95127 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 2 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -13.76 8.47 -34.44 -0.29 -14.06 16 8 H 0.06 1.67 7.13 -52.49 -0.37 1.29 16 9 C 0.19 4.90 4.72 -4.97 -0.02 4.87 16 10 N -0.54 -11.01 4.70 -235.90 -1.11 -12.12 16 11 C 0.06 1.03 5.61 -3.76 -0.02 1.01 16 12 C 0.05 0.70 5.34 -3.77 -0.02 0.68 16 13 N -0.52 -6.50 4.54 -226.74 -1.03 -7.53 16 14 C 0.05 0.47 2.80 -67.92 -0.19 0.28 16 15 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 16 C -0.15 -1.10 6.15 -26.94 -0.17 -1.27 16 17 C 0.54 5.29 7.95 -11.09 -0.09 5.21 16 18 O -0.47 -5.91 17.60 5.60 0.10 -5.81 16 19 N -0.53 -5.45 2.61 -59.40 -0.16 -5.60 16 20 C 0.10 1.06 4.94 -83.57 -0.41 0.64 16 21 C -0.07 -0.63 9.81 -39.42 -0.39 -1.02 16 22 C -0.14 -1.14 10.02 -39.54 -0.40 -1.54 16 23 C 0.11 0.96 7.30 -39.41 -0.29 0.67 16 24 F -0.13 -1.24 17.26 2.25 0.04 -1.20 16 25 C -0.14 -1.20 10.02 -39.54 -0.40 -1.59 16 26 C -0.07 -0.65 9.80 -39.41 -0.39 -1.04 16 27 C 0.54 6.00 7.25 -11.08 -0.08 5.92 16 28 O -0.46 -6.26 15.29 5.60 0.09 -6.18 16 29 C 0.05 0.70 5.35 -3.77 -0.02 0.68 16 30 C 0.07 1.18 5.43 -3.77 -0.02 1.16 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 33 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 36 H 0.09 1.30 5.62 -51.92 -0.29 1.01 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.14 0.98 6.52 -51.93 -0.34 0.64 16 40 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.76 6.32 -51.93 -0.33 0.43 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 1.71 6.79 -51.93 -0.35 1.36 16 LS Contribution 388.57 15.07 5.86 5.86 Total: -1.00 -32.38 388.57 -10.09 -42.47 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -6.31 Total: -2.47 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -3.28 Total: 2.04 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -1.56 Total: -50.75 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.18 Total: -11.99 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.38 -10.09 -42.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019371368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.551 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds