Wall clock time and date at job start Tue Mar 31 2020 05:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99905 * 2 1 4 4 H 1.48496 * 109.47376 * 270.00039 * 3 2 1 5 5 H 1.48504 * 109.47075 * 30.00644 * 3 2 1 6 6 H 1.48500 * 109.47124 * 150.00231 * 3 2 1 7 7 C 1.37875 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99638 * 0.02562 * 7 2 1 10 10 N 1.46910 * 109.46507 * 179.97438 * 9 7 2 11 11 C 1.46959 * 110.99583 * 170.00041 * 10 9 7 12 12 C 1.53051 * 109.36152 * 183.18898 * 11 10 9 13 13 N 1.46952 * 109.36541 * 301.59735 * 12 11 10 14 14 C 1.46900 * 110.99932 * 183.19066 * 13 12 11 15 15 H 1.08995 * 110.66708 * 298.51800 * 14 13 12 16 16 C 1.54234 * 110.71035 * 175.64936 * 14 13 12 17 17 C 1.51311 * 103.55410 * 241.77585 * 16 14 13 18 18 O 1.21235 * 125.39512 * 179.79266 * 17 16 14 19 19 N 1.33879 * 109.21022 * 359.76992 * 17 16 14 20 20 C 1.40279 * 122.76441 * 180.02562 * 19 17 16 21 21 C 1.38806 * 120.04315 * 112.45960 * 20 19 17 22 22 C 1.38119 * 119.96185 * 179.76577 * 21 20 19 23 23 C 1.38473 * 120.03967 * 0.50995 * 22 21 20 24 24 F 1.35090 * 119.96246 * 179.76352 * 23 22 21 25 25 C 1.38480 * 120.07760 * 359.74540 * 23 22 21 26 26 C 1.38116 * 120.04364 * 359.97438 * 25 23 22 27 27 C 1.33882 * 114.47192 * 359.97438 * 19 17 16 28 28 O 1.21229 * 125.39306 * 179.97438 * 27 19 17 29 29 C 1.46952 * 110.88230 * 59.31921 * 13 12 11 30 30 C 1.46951 * 110.99884 * 293.79626 * 10 9 7 31 31 H 0.96999 * 119.99626 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47372 * 60.00442 * 9 7 2 33 33 H 1.08993 * 109.47453 * 299.99425 * 9 7 2 34 34 H 1.09002 * 109.49241 * 63.22025 * 11 10 9 35 35 H 1.09006 * 109.48878 * 303.15234 * 11 10 9 36 36 H 1.09008 * 109.48549 * 181.63107 * 12 11 10 37 37 H 1.09002 * 109.49126 * 61.56875 * 12 11 10 38 38 H 1.08993 * 110.80267 * 123.16224 * 16 14 13 39 39 H 1.08998 * 110.41013 * 0.19527 * 16 14 13 40 40 H 1.08002 * 120.01706 * 0.02562 * 21 20 19 41 41 H 1.07994 * 119.97981 * 180.25529 * 22 21 20 42 42 H 1.08008 * 119.97938 * 180.02562 * 25 23 22 43 43 H 1.07999 * 120.02483 * 180.02562 * 26 25 23 44 44 H 1.09002 * 109.48774 * 60.64902 * 29 13 12 45 45 H 1.08997 * 109.48882 * 180.70950 * 29 13 12 46 46 H 1.09000 * 109.49643 * 296.77668 * 30 10 9 47 47 H 1.09000 * 109.49279 * 56.85021 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0027 11 6 1.5209 -4.8942 0.2344 12 6 2.5564 -6.0190 0.3051 13 7 3.3194 -6.0584 -0.9502 14 6 4.2740 -7.1750 -0.9512 15 1 4.9978 -7.0630 -0.1440 16 6 4.9936 -7.2763 -2.3116 17 6 4.5906 -8.6413 -2.8252 18 8 4.9385 -9.1252 -3.8809 19 7 3.7895 -9.2304 -1.9288 20 6 3.2489 -10.5107 -2.1194 21 6 3.6543 -11.5636 -1.3108 22 6 3.1174 -12.8225 -1.4968 23 6 2.1831 -13.0370 -2.4961 24 9 1.6625 -14.2699 -2.6797 25 6 1.7814 -11.9889 -3.3071 26 6 2.3118 -10.7274 -3.1203 27 6 3.5476 -8.4973 -0.8349 28 8 2.8519 -8.8367 0.0981 29 6 4.0041 -4.7800 -1.1874 30 6 2.9686 -3.6551 -1.2580 31 1 -0.4849 0.8401 0.0004 32 1 0.6247 -2.5563 -0.8920 33 1 0.6241 -2.5575 0.8880 34 1 0.8253 -5.0910 -0.5814 35 1 0.9733 -4.8444 1.1756 36 1 2.0484 -6.9722 0.4520 37 1 3.2355 -5.8363 1.1379 38 1 6.0743 -7.2184 -2.1831 39 1 4.6439 -6.4943 -2.9857 40 1 4.3860 -11.3976 -0.5339 41 1 3.4295 -13.6410 -0.8652 42 1 1.0522 -12.1578 -4.0858 43 1 1.9981 -9.9101 -3.7528 44 1 4.6997 -4.5832 -0.3716 45 1 4.5517 -4.8299 -2.1285 46 1 2.2896 -3.8379 -2.0908 47 1 3.4766 -2.7019 -1.4050 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019371368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:28 Heat of formation + Delta-G solvation = -67.880113 kcal Electronic energy + Delta-G solvation = -32207.475614 eV Core-core repulsion = 27690.854313 eV Total energy + Delta-G solvation = -4516.621301 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.04100 -43.45785 -40.45651 -39.80977 -39.50836 -37.24624 -36.60724 -34.71754 -33.17343 -32.39203 -31.87662 -30.29257 -29.31753 -27.34493 -25.99424 -24.77967 -24.26868 -24.07877 -23.41410 -22.66446 -20.93769 -20.71417 -19.17838 -18.71779 -18.56061 -18.45608 -17.70009 -17.38835 -16.82206 -16.70747 -16.64444 -16.20185 -15.88463 -15.76583 -15.65910 -15.47923 -15.27680 -15.21530 -15.01336 -14.75695 -14.48363 -14.36091 -14.25252 -14.04145 -13.60147 -13.54999 -13.25085 -13.14175 -12.78174 -12.65795 -12.53668 -12.41308 -12.24283 -12.18621 -12.07454 -11.62471 -11.48451 -11.41325 -11.29128 -10.94170 -10.60065 -10.32007 -9.78282 -9.51056 -9.02473 -8.18450 -6.28942 -0.24220 0.03511 0.30982 1.21538 1.44014 1.45530 1.49884 1.56906 2.26965 2.42278 2.71194 2.97298 3.07429 3.14175 3.15524 3.31413 3.39263 3.57857 3.69258 3.89332 3.93499 4.04417 4.10039 4.17110 4.20958 4.35182 4.41504 4.54438 4.56570 4.64458 4.70793 4.71422 4.84150 4.91492 4.92467 4.95514 4.98389 5.04348 5.05741 5.08193 5.27281 5.28999 5.55796 5.63269 5.65852 5.80810 5.87606 6.06612 6.13042 6.35299 6.61750 6.62470 6.87630 7.41097 8.92884 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.001982 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.759797 B =14125.063614 C =14610.782256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.519 4.519 8 H 0.069 0.931 9 C 0.208 3.792 10 N -0.542 5.542 11 C 0.058 3.942 12 C 0.065 3.935 13 N -0.532 5.532 14 C 0.056 3.944 15 H 0.128 0.872 16 C -0.137 4.137 17 C 0.536 3.464 18 O -0.501 6.501 19 N -0.527 5.527 20 C 0.078 3.922 21 C -0.077 4.077 22 C -0.138 4.138 23 C 0.098 3.902 24 F -0.138 7.138 25 C -0.141 4.141 26 C -0.082 4.082 27 C 0.541 3.459 28 O -0.490 6.490 29 C 0.067 3.933 30 C 0.064 3.936 31 H 0.263 0.737 32 H -0.042 1.042 33 H -0.001 1.001 34 H 0.016 0.984 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.168 0.832 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.168 0.832 42 H 0.162 0.838 43 H 0.139 0.861 44 H 0.057 0.943 45 H 0.118 0.882 46 H 0.016 0.984 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.810 -24.104 -5.189 27.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.082 3.918 10 N -0.266 5.266 11 C -0.071 4.071 12 C -0.063 4.063 13 N -0.259 5.259 14 C -0.056 4.056 15 H 0.145 0.855 16 C -0.176 4.176 17 C 0.328 3.672 18 O -0.373 6.373 19 N -0.267 5.267 20 C -0.010 4.010 21 C -0.096 4.096 22 C -0.157 4.157 23 C 0.079 3.921 24 F -0.117 7.117 25 C -0.161 4.161 26 C -0.101 4.101 27 C 0.331 3.669 28 O -0.360 6.360 29 C -0.059 4.059 30 C -0.065 4.065 31 H 0.072 0.928 32 H -0.024 1.024 33 H 0.017 0.983 34 H 0.035 0.965 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.185 0.815 39 H 0.162 0.838 40 H 0.168 0.832 41 H 0.186 0.814 42 H 0.180 0.820 43 H 0.157 0.843 44 H 0.076 0.924 45 H 0.136 0.864 46 H 0.034 0.966 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.459 -24.485 -5.247 27.969 hybrid contribution -0.846 0.710 0.043 1.105 sum 11.614 -23.774 -5.204 26.966 Atomic orbital electron populations 1.70108 1.07917 1.27858 1.51917 1.25978 0.95726 1.03427 0.94895 0.85338 0.78568 0.78012 0.78421 1.19725 1.21246 1.18530 1.21451 0.93778 0.90686 1.49773 0.91260 1.19349 0.90164 0.89195 0.93130 1.62254 1.27087 1.02501 1.34806 1.22093 0.95598 0.89654 0.99757 1.22216 0.95825 0.98246 0.90021 1.62203 1.24986 1.03142 1.35568 1.22427 0.94197 0.87957 1.00979 0.85466 1.22802 1.05635 0.93514 0.95642 1.21402 0.75347 0.88313 0.82152 1.90789 1.54476 1.70028 1.22042 1.44493 1.45180 1.15646 1.21422 1.17989 0.98516 0.84559 0.99974 1.21153 0.99062 0.90770 0.98643 1.21279 0.97266 0.98598 0.98584 1.17926 0.96296 0.80269 0.97619 1.91516 1.85315 1.40173 1.94671 1.21244 1.02390 0.91140 1.01277 1.21124 0.94159 0.97880 0.96979 1.21119 0.79068 0.86735 0.80004 1.90744 1.36112 1.75314 1.33798 1.22319 0.94850 0.85503 1.03258 1.22064 0.95846 0.98996 0.89565 0.92800 1.02411 0.98251 0.96540 0.91527 0.89253 0.93074 0.81491 0.83812 0.83217 0.81450 0.81992 0.84327 0.92427 0.86442 0.96593 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.29 13.29 21.45 0.28 -56.01 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.52 -28.56 8.47 25.60 0.22 -28.35 16 8 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 9 C 0.21 11.02 4.72 85.56 0.40 11.42 16 10 N -0.54 -22.54 4.70 -900.24 -4.23 -26.77 16 11 C 0.06 2.09 5.61 86.31 0.48 2.58 16 12 C 0.06 1.79 5.34 86.31 0.46 2.25 16 13 N -0.53 -11.93 4.54 -871.26 -3.96 -15.89 16 14 C 0.06 0.84 2.80 44.78 0.13 0.97 16 15 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 16 C -0.14 -1.41 6.15 30.46 0.19 -1.22 16 17 C 0.54 9.37 7.95 87.99 0.70 10.07 16 18 O -0.50 -11.74 17.60 -2.89 -0.05 -11.79 16 19 N -0.53 -10.05 2.61 -579.65 -1.52 -11.56 16 20 C 0.08 1.56 4.94 38.06 0.19 1.75 16 21 C -0.08 -1.28 9.81 22.38 0.22 -1.07 16 22 C -0.14 -2.03 10.02 22.30 0.22 -1.81 16 23 C 0.10 1.64 7.30 22.38 0.16 1.81 16 24 F -0.14 -2.42 17.26 44.97 0.78 -1.65 16 25 C -0.14 -2.32 10.02 22.30 0.22 -2.09 16 26 C -0.08 -1.56 9.80 22.38 0.22 -1.34 16 27 C 0.54 10.96 7.25 87.99 0.64 11.60 16 28 O -0.49 -12.86 15.29 -2.87 -0.04 -12.91 16 29 C 0.07 1.50 5.35 86.31 0.46 1.96 16 30 C 0.06 2.20 5.43 86.31 0.47 2.67 16 31 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 32 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 33 H 0.00 -0.04 8.03 -2.39 -0.02 -0.06 16 34 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 2.47 8.07 -2.38 -0.02 2.45 16 36 H 0.09 2.54 5.62 -2.38 -0.01 2.53 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.17 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.14 1.40 6.52 -2.39 -0.02 1.38 16 40 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 44 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.12 1.73 6.32 -2.39 -0.02 1.71 16 46 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.08 2.88 6.79 -2.39 -0.02 2.86 16 Total: -1.00 -73.47 388.57 0.13 -73.33 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.00 Total: 6.50 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 5.85 Total: 11.52 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -9.42 Total: -110.23 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.09 Total: -24.70 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -73.47 0.13 -73.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019371368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.455 kcal (2) G-P(sol) polarization free energy of solvation -73.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds