Wall clock time and date at job start Tue Mar 31 2020 05:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38309 * 119.96908 * 2 1 4 4 C 1.38254 * 120.15273 * 179.97438 * 3 2 1 5 5 C 1.38155 * 120.09714 * 359.79460 * 4 3 2 6 6 C 1.38836 * 119.93505 * 0.46018 * 5 4 3 7 7 N 1.39900 * 120.07402 * 179.78996 * 6 5 4 8 8 C 1.36621 * 119.99965 * 32.10064 * 7 6 5 9 9 N 1.36538 * 120.00272 * 173.54144 * 8 7 6 10 10 N 1.32409 * 119.99864 * 353.54098 * 8 7 6 11 11 C 1.33891 * 119.99617 * 190.53808 * 10 8 7 12 12 N 1.32705 * 118.81731 * 6.91197 * 11 10 8 13 13 C 1.31940 * 122.29292 * 179.74512 * 12 11 10 14 14 C 1.50695 * 120.18602 * 180.28712 * 13 12 11 15 15 C 1.40849 * 119.63627 * 0.51700 * 13 12 11 16 16 C 1.40501 * 121.07738 * 179.72928 * 15 13 12 17 17 H 1.08004 * 119.99749 * 320.68099 * 16 15 13 18 18 C 1.39872 * 120.00412 * 140.68030 * 16 15 13 19 19 N 1.30981 * 120.00000 * 354.49895 * 18 16 15 20 20 Si 1.86804 * 119.99980 * 174.50355 * 18 16 15 21 21 H 1.48495 * 109.47340 * 89.99923 * 20 18 16 22 22 H 1.48499 * 109.46975 * 209.99888 * 20 18 16 23 23 H 1.48500 * 109.47081 * 329.99374 * 20 18 16 24 24 C 1.47416 * 117.85063 * 359.74900 * 15 13 12 25 25 O 1.21765 * 121.06051 * 180.02562 * 24 15 13 26 26 N 1.35154 * 117.88203 * 359.97438 * 24 15 13 27 27 H 0.96998 * 120.01841 * 180.02562 * 26 24 15 28 28 C 1.38176 * 119.97010 * 180.02562 * 2 1 3 29 29 Cl 1.73594 * 120.04926 * 359.95379 * 28 2 1 30 30 H 1.08996 * 109.46994 * 269.97549 * 1 2 3 31 31 H 1.09004 * 109.47006 * 29.97680 * 1 2 3 32 32 H 1.08995 * 109.46952 * 149.97768 * 1 2 3 33 33 H 1.08000 * 119.92330 * 0.02562 * 3 2 1 34 34 H 1.08007 * 119.95245 * 180.02562 * 4 3 2 35 35 H 1.07999 * 120.03089 * 180.25042 * 5 4 3 36 36 H 0.96996 * 120.00094 * 212.37236 * 7 6 5 37 37 H 0.97002 * 119.99889 * 25.70978 * 9 8 7 38 38 H 0.96997 * 120.00279 * 205.71125 * 9 8 7 39 39 H 1.09003 * 109.47204 * 270.23653 * 14 13 12 40 40 H 1.09006 * 109.46748 * 30.22960 * 14 13 12 41 41 H 1.08997 * 109.47359 * 150.22722 * 14 13 12 42 42 H 0.96997 * 120.00505 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1982 0.0000 4 6 3.5805 1.2026 0.0005 5 6 4.2771 0.0095 0.0054 6 6 3.5875 -1.1954 0.0000 7 7 4.2900 -2.4052 0.0004 8 6 5.4972 -2.4940 0.6340 9 7 6.1208 -3.7032 0.7488 10 7 6.0624 -1.4072 1.1368 11 6 7.3296 -1.4498 1.5671 12 7 8.0412 -2.5493 1.3532 13 6 9.2964 -2.6636 1.7433 14 6 10.0623 -3.9323 1.4697 15 6 9.9151 -1.5952 2.4211 16 6 11.2483 -1.6865 2.8550 17 1 11.6197 -2.6129 3.2676 18 6 12.0947 -0.5776 2.7525 19 7 11.6784 0.5110 2.1547 20 14 13.8188 -0.6492 3.4681 21 1 14.7620 -1.1522 2.4374 22 1 14.2335 0.7107 3.8971 23 1 13.8313 -1.5628 4.6387 24 6 9.1185 -0.3783 2.6611 25 8 9.5952 0.5805 3.2409 26 7 7.8425 -0.3601 2.2160 27 1 7.2905 0.4250 2.3568 28 6 2.1973 -1.1970 -0.0005 29 17 1.3298 -2.7007 0.0000 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6562 2.1325 0.0004 34 1 4.1167 2.1401 0.0010 35 1 5.3571 0.0143 0.0099 36 1 3.9219 -3.1800 -0.4525 37 1 5.9401 -4.4052 0.1042 38 1 6.7443 -3.8603 1.4750 39 1 9.9290 -4.6238 2.3017 40 1 9.6906 -4.3906 0.5532 41 1 11.1212 -3.7001 1.3563 42 1 12.2651 1.2801 2.0840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020503618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:28 Heat of formation + Delta-G solvation = 82.742015 kcal Electronic energy + Delta-G solvation = -29444.469214 eV Core-core repulsion = 25259.175410 eV Total energy + Delta-G solvation = -4185.293804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.105 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.23191 -39.46194 -38.00755 -36.53559 -36.02212 -34.54458 -33.98342 -32.77069 -32.25498 -31.30248 -29.69888 -29.10808 -27.60974 -26.92428 -24.84345 -23.04305 -22.58298 -21.59465 -20.79541 -19.65583 -18.21833 -18.12567 -17.00576 -16.58477 -16.52383 -15.99808 -15.54717 -15.47038 -15.30937 -14.73582 -14.21621 -14.18842 -14.14134 -13.46632 -13.35718 -13.28504 -13.00070 -12.50775 -12.49044 -12.30525 -12.05251 -11.83879 -11.67010 -11.51108 -11.47157 -11.32555 -11.20072 -11.12443 -10.84803 -10.74759 -10.38898 -10.00491 -9.41211 -9.18437 -8.93684 -8.61473 -8.54135 -8.41404 -8.08661 -7.89110 -6.87921 -6.40685 -4.10506 1.11597 1.29595 1.92112 2.03575 2.82457 2.96069 3.08743 3.12912 3.22637 3.68241 3.91877 3.96365 4.16875 4.58897 4.66110 4.79323 4.84882 5.14732 5.20834 5.39234 5.43828 5.48365 5.52687 5.63889 5.81905 5.85232 5.98298 6.23104 6.29016 6.31854 6.54035 6.61350 6.69019 6.83025 6.85466 6.94012 7.06735 7.13891 7.36499 7.49387 7.61320 7.96730 8.03807 8.17536 8.40791 8.62299 8.70878 9.05949 9.64926 9.69119 10.19829 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.002492 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.212639 B =11231.859475 C =12395.733465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.064 4.064 3 C -0.136 4.136 4 C -0.093 4.093 5 C -0.110 4.110 6 C 0.193 3.807 7 N -0.653 5.653 8 C 0.636 3.364 9 N -0.842 5.842 10 N -0.598 5.598 11 C 0.426 3.574 12 N -0.524 5.524 13 C -0.064 4.064 14 C -0.052 4.052 15 C -0.011 4.011 16 C -0.402 4.402 17 H 0.088 0.912 18 C 0.063 3.937 19 N -0.740 5.740 20 Si 0.917 3.083 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.261 1.261 24 C 0.522 3.478 25 O -0.522 6.522 26 N -0.627 5.627 27 H 0.392 0.608 28 C -0.078 4.078 29 Cl -0.076 7.076 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.169 0.831 36 H 0.413 0.587 37 H 0.380 0.620 38 H 0.428 0.572 39 H 0.037 0.963 40 H 0.041 0.959 41 H 0.061 0.939 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.898 -4.023 -6.724 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.065 4.065 3 C -0.156 4.156 4 C -0.112 4.112 5 C -0.131 4.131 6 C 0.095 3.905 7 N -0.285 5.285 8 C 0.274 3.726 9 N -0.405 5.405 10 N -0.342 5.342 11 C 0.075 3.925 12 N -0.253 5.253 13 C -0.189 4.189 14 C -0.109 4.109 15 C -0.021 4.021 16 C -0.431 4.431 17 H 0.106 0.894 18 C -0.160 4.160 19 N -0.362 5.362 20 Si 0.741 3.259 21 H -0.195 1.195 22 H -0.201 1.201 23 H -0.185 1.185 24 C 0.315 3.685 25 O -0.397 6.397 26 N -0.273 5.273 27 H 0.227 0.773 28 C -0.108 4.108 29 Cl -0.047 7.047 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.186 0.814 36 H 0.251 0.749 37 H 0.208 0.792 38 H 0.274 0.726 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.780 -3.237 -6.536 19.218 hybrid contribution 1.123 -0.390 0.554 1.312 sum -16.657 -3.627 -5.982 18.066 Atomic orbital electron populations 1.20818 0.90560 1.03096 1.02710 1.19449 0.96223 0.90933 0.99920 1.20917 0.94352 0.96692 1.03607 1.21202 0.93794 0.98340 0.97877 1.21762 1.03156 0.89387 0.98764 1.17235 0.87804 0.86271 0.99210 1.41233 1.18502 1.12202 1.56596 1.18228 0.82774 0.83600 0.88038 1.43568 1.50676 1.11864 1.34368 1.68373 1.10052 1.23352 1.32416 1.18796 0.89335 0.85295 0.99111 1.67317 1.10188 1.21081 1.26719 1.20373 0.91548 0.99349 1.07627 1.19986 0.98985 0.93286 0.98669 1.20113 0.94768 0.90330 0.96870 1.19150 0.93368 0.97896 1.32725 0.89420 1.26011 1.01182 0.94281 0.94521 1.69856 1.35950 1.02355 1.28046 0.86163 0.81034 0.78654 0.80001 1.19454 1.20119 1.18493 1.19390 0.79362 0.89943 0.79781 1.90732 1.69128 1.37035 1.42762 1.44110 1.14828 1.16588 1.51800 0.77271 1.20536 0.90130 0.87018 1.13124 1.98325 1.76590 1.32560 1.97239 0.90891 0.91262 0.91112 0.85620 0.85295 0.81398 0.74931 0.79201 0.72562 0.94416 0.93993 0.91979 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.61 36.01 0.35 -0.56 16 2 C -0.06 -0.66 5.88 -104.62 -0.62 -1.28 16 3 C -0.14 -1.38 9.70 -39.55 -0.38 -1.76 16 4 C -0.09 -1.07 10.04 -39.61 -0.40 -1.47 16 5 C -0.11 -1.49 8.66 -39.39 -0.34 -1.83 16 6 C 0.19 2.48 6.37 -83.66 -0.53 1.95 16 7 N -0.65 -7.96 5.16 -11.16 -0.06 -8.01 16 8 C 0.64 9.63 8.40 -320.04 -2.69 6.94 16 9 N -0.84 -11.48 7.78 30.14 0.23 -11.24 16 10 N -0.60 -10.88 6.69 -14.54 -0.10 -10.97 16 11 C 0.43 9.21 8.25 -323.00 -2.67 6.55 16 12 N -0.52 -11.33 6.15 -9.71 -0.06 -11.39 16 13 C -0.06 -1.52 6.89 -81.56 -0.56 -2.08 16 14 C -0.05 -1.03 9.70 36.00 0.35 -0.68 16 15 C -0.01 -0.30 5.57 -104.32 -0.58 -0.88 16 16 C -0.40 -10.55 7.72 -38.12 -0.29 -10.85 16 17 H 0.09 2.15 7.51 -52.48 -0.39 1.75 16 18 C 0.06 1.64 5.03 -17.30 -0.09 1.55 16 19 N -0.74 -20.38 10.40 55.55 0.58 -19.80 16 20 Si 0.92 19.21 29.56 -169.99 -5.03 14.18 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 24 C 0.52 14.12 7.43 -12.35 -0.09 14.03 16 25 O -0.52 -15.44 14.78 5.13 0.08 -15.37 16 26 N -0.63 -14.56 5.34 -14.07 -0.08 -14.63 16 27 H 0.39 8.34 8.91 -40.82 -0.36 7.98 16 28 C -0.08 -0.89 6.33 -39.31 -0.25 -1.14 16 29 Cl -0.08 -0.75 26.25 -51.86 -1.36 -2.11 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.07 0.54 6.90 -51.93 -0.36 0.18 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.17 2.68 5.71 -52.49 -0.30 2.38 16 36 H 0.41 3.99 8.12 -40.82 -0.33 3.66 16 37 H 0.38 3.87 8.95 -40.82 -0.37 3.51 16 38 H 0.43 6.86 6.21 -40.82 -0.25 6.61 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.26 7.09 -51.93 -0.37 0.89 16 42 H 0.28 7.17 8.30 -40.82 -0.34 6.83 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -31.31 365.34 -13.48 -44.79 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -4.40 Total: 20.57 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: -8.79 Total: 8.49 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: 0.52 Total: -76.06 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.08 Total: -15.37 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.36 Total: -2.11 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.31 -13.48 -44.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020503618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.532 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds