Wall clock time and date at job start Tue Mar 31 2020 05:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38309 * 119.96908 * 2 1 4 4 C 1.38254 * 120.15273 * 179.97438 * 3 2 1 5 5 C 1.38155 * 120.09714 * 359.79460 * 4 3 2 6 6 C 1.38836 * 119.93505 * 0.46018 * 5 4 3 7 7 N 1.39900 * 120.07402 * 179.78996 * 6 5 4 8 8 C 1.36621 * 119.99965 * 32.10064 * 7 6 5 9 9 N 1.36538 * 120.00272 * 173.54144 * 8 7 6 10 10 N 1.32409 * 119.99864 * 353.54098 * 8 7 6 11 11 C 1.33891 * 119.99617 * 190.53808 * 10 8 7 12 12 N 1.32705 * 118.81731 * 6.91197 * 11 10 8 13 13 C 1.31940 * 122.29292 * 179.74512 * 12 11 10 14 14 C 1.50695 * 120.18602 * 180.28712 * 13 12 11 15 15 C 1.40849 * 119.63627 * 0.51700 * 13 12 11 16 16 C 1.40501 * 121.07738 * 179.72928 * 15 13 12 17 17 H 1.08004 * 119.99749 * 320.68099 * 16 15 13 18 18 C 1.39872 * 120.00412 * 140.68030 * 16 15 13 19 19 N 1.30981 * 120.00000 * 354.49895 * 18 16 15 20 20 Si 1.86804 * 119.99980 * 174.50355 * 18 16 15 21 21 H 1.48495 * 109.47340 * 89.99923 * 20 18 16 22 22 H 1.48499 * 109.46975 * 209.99888 * 20 18 16 23 23 H 1.48500 * 109.47081 * 329.99374 * 20 18 16 24 24 C 1.47416 * 117.85063 * 359.74900 * 15 13 12 25 25 O 1.21765 * 121.06051 * 180.02562 * 24 15 13 26 26 N 1.35154 * 117.88203 * 359.97438 * 24 15 13 27 27 H 0.96998 * 120.01841 * 180.02562 * 26 24 15 28 28 C 1.38176 * 119.97010 * 180.02562 * 2 1 3 29 29 Cl 1.73594 * 120.04926 * 359.95379 * 28 2 1 30 30 H 1.08996 * 109.46994 * 269.97549 * 1 2 3 31 31 H 1.09004 * 109.47006 * 29.97680 * 1 2 3 32 32 H 1.08995 * 109.46952 * 149.97768 * 1 2 3 33 33 H 1.08000 * 119.92330 * 0.02562 * 3 2 1 34 34 H 1.08007 * 119.95245 * 180.02562 * 4 3 2 35 35 H 1.07999 * 120.03089 * 180.25042 * 5 4 3 36 36 H 0.96996 * 120.00094 * 212.37236 * 7 6 5 37 37 H 0.97002 * 119.99889 * 25.70978 * 9 8 7 38 38 H 0.96997 * 120.00279 * 205.71125 * 9 8 7 39 39 H 1.09003 * 109.47204 * 270.23653 * 14 13 12 40 40 H 1.09006 * 109.46748 * 30.22960 * 14 13 12 41 41 H 1.08997 * 109.47359 * 150.22722 * 14 13 12 42 42 H 0.96997 * 120.00505 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1982 0.0000 4 6 3.5805 1.2026 0.0005 5 6 4.2771 0.0095 0.0054 6 6 3.5875 -1.1954 0.0000 7 7 4.2900 -2.4052 0.0004 8 6 5.4972 -2.4940 0.6340 9 7 6.1208 -3.7032 0.7488 10 7 6.0624 -1.4072 1.1368 11 6 7.3296 -1.4498 1.5671 12 7 8.0412 -2.5493 1.3532 13 6 9.2964 -2.6636 1.7433 14 6 10.0623 -3.9323 1.4697 15 6 9.9151 -1.5952 2.4211 16 6 11.2483 -1.6865 2.8550 17 1 11.6197 -2.6129 3.2676 18 6 12.0947 -0.5776 2.7525 19 7 11.6784 0.5110 2.1547 20 14 13.8188 -0.6492 3.4681 21 1 14.7620 -1.1522 2.4374 22 1 14.2335 0.7107 3.8971 23 1 13.8313 -1.5628 4.6387 24 6 9.1185 -0.3783 2.6611 25 8 9.5952 0.5805 3.2409 26 7 7.8425 -0.3601 2.2160 27 1 7.2905 0.4250 2.3568 28 6 2.1973 -1.1970 -0.0005 29 17 1.3298 -2.7007 0.0000 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6562 2.1325 0.0004 34 1 4.1167 2.1401 0.0010 35 1 5.3571 0.0143 0.0099 36 1 3.9219 -3.1800 -0.4525 37 1 5.9401 -4.4052 0.1042 38 1 6.7443 -3.8603 1.4750 39 1 9.9290 -4.6238 2.3017 40 1 9.6906 -4.3906 0.5532 41 1 11.1212 -3.7001 1.3563 42 1 12.2651 1.2801 2.0840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020503618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:26 Heat of formation + Delta-G solvation = 67.273076 kcal Electronic energy + Delta-G solvation = -29445.139998 eV Core-core repulsion = 25259.175410 eV Total energy + Delta-G solvation = -4185.964587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.105 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.66161 -40.91173 -39.37303 -37.75429 -37.39306 -36.26227 -35.32276 -34.50545 -33.34659 -32.72367 -31.26767 -30.26434 -29.31723 -27.74060 -26.56280 -24.55304 -23.62920 -22.93488 -22.48281 -21.00120 -19.99387 -19.34105 -18.54376 -18.16488 -17.63897 -17.54969 -17.07999 -16.73181 -16.44418 -16.34377 -15.91510 -15.37467 -15.09811 -15.02506 -14.75100 -14.62651 -14.22741 -14.00425 -13.67156 -13.50044 -13.23217 -13.19350 -13.02951 -12.95441 -12.83759 -12.63673 -12.46121 -12.36269 -12.29309 -12.06093 -11.72192 -11.20443 -11.11707 -10.76447 -10.62416 -10.42701 -10.20926 -9.69099 -9.50101 -9.00540 -8.62523 -8.19420 -5.97450 0.00996 0.31551 0.49585 1.13939 1.32553 1.38431 1.48937 1.52821 1.61231 2.15614 2.27305 2.39012 2.77674 2.97708 3.35193 3.67835 3.82684 3.90373 4.06180 4.11280 4.32657 4.36628 4.54101 4.63840 4.73375 4.86863 4.97411 5.01245 5.11968 5.18719 5.22019 5.28372 5.32668 5.43414 5.59028 5.64701 5.71252 5.76940 5.80192 5.97605 6.11212 6.16787 6.26476 6.64202 6.86140 6.93931 7.08708 7.44732 7.75323 7.82471 8.49053 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.002492 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.212639 B =11231.859475 C =12395.733465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.066 4.066 3 C -0.127 4.127 4 C -0.099 4.099 5 C -0.129 4.129 6 C 0.170 3.830 7 N -0.635 5.635 8 C 0.667 3.333 9 N -0.828 5.828 10 N -0.626 5.626 11 C 0.469 3.531 12 N -0.541 5.541 13 C -0.030 4.030 14 C -0.049 4.049 15 C -0.071 4.071 16 C -0.449 4.449 17 H 0.089 0.911 18 C 0.017 3.983 19 N -0.805 5.805 20 Si 0.984 3.016 21 H -0.256 1.256 22 H -0.282 1.282 23 H -0.256 1.256 24 C 0.503 3.497 25 O -0.561 6.561 26 N -0.622 5.622 27 H 0.398 0.602 28 C -0.079 4.079 29 Cl -0.061 7.061 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.155 0.845 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.428 0.572 37 H 0.404 0.596 38 H 0.425 0.575 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.865 -6.010 -8.134 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.067 4.067 3 C -0.146 4.146 4 C -0.118 4.118 5 C -0.150 4.150 6 C 0.073 3.927 7 N -0.268 5.268 8 C 0.305 3.695 9 N -0.389 5.389 10 N -0.374 5.374 11 C 0.116 3.884 12 N -0.273 5.273 13 C -0.153 4.153 14 C -0.107 4.107 15 C -0.080 4.080 16 C -0.481 4.481 17 H 0.107 0.893 18 C -0.199 4.199 19 N -0.430 5.430 20 Si 0.805 3.195 21 H -0.180 1.180 22 H -0.208 1.208 23 H -0.179 1.179 24 C 0.299 3.701 25 O -0.440 6.440 26 N -0.267 5.267 27 H 0.235 0.765 28 C -0.109 4.109 29 Cl -0.032 7.032 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.173 0.827 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.269 0.731 37 H 0.235 0.765 38 H 0.269 0.731 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.846 -5.312 -8.010 23.867 hybrid contribution 1.453 0.019 0.677 1.603 sum -20.393 -5.293 -7.332 22.308 Atomic orbital electron populations 1.20892 0.88460 1.04257 1.03500 1.19863 0.97782 0.90527 0.98537 1.21268 0.93776 0.97973 1.01582 1.21393 0.94730 0.98111 0.97578 1.21616 1.02125 0.90773 1.00503 1.17310 0.88538 0.85856 1.00994 1.41205 1.17009 1.12998 1.55545 1.18488 0.83086 0.83419 0.84523 1.43530 1.49298 1.11811 1.34271 1.68590 1.08559 1.24696 1.35535 1.19546 0.90406 0.84081 0.94392 1.67636 1.09624 1.21032 1.28978 1.21107 0.91789 0.99313 1.03119 1.20043 0.98107 0.91945 1.00566 1.20331 0.95764 0.91301 1.00651 1.19162 0.93942 0.98582 1.36368 0.89299 1.26827 1.04761 0.93822 0.94447 1.69980 1.37357 1.03355 1.32300 0.85181 0.76681 0.78103 0.79532 1.18010 1.20774 1.17919 1.19755 0.80093 0.90288 0.79968 1.90674 1.70029 1.38438 1.44812 1.44192 1.14165 1.17434 1.50937 0.76536 1.20635 0.89650 0.88221 1.12393 1.98334 1.76117 1.31611 1.97136 0.90139 0.89301 0.90885 0.82742 0.84230 0.83937 0.73097 0.76525 0.73096 0.92146 0.91640 0.92718 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.61 71.24 0.68 -0.64 16 2 C -0.07 -1.13 5.88 -19.86 -0.12 -1.24 16 3 C -0.13 -2.14 9.70 22.29 0.22 -1.92 16 4 C -0.10 -2.08 10.04 22.25 0.22 -1.86 16 5 C -0.13 -3.32 8.66 22.39 0.19 -3.13 16 6 C 0.17 3.94 6.37 38.18 0.24 4.18 16 7 N -0.63 -13.46 5.16 -189.22 -0.98 -14.44 16 8 C 0.67 18.30 8.40 260.52 2.19 20.49 16 9 N -0.83 -19.59 7.78 -58.55 -0.46 -20.05 16 10 N -0.63 -21.81 6.69 -199.91 -1.34 -23.15 16 11 C 0.47 20.05 8.25 261.55 2.16 22.21 16 12 N -0.54 -22.71 6.15 -184.63 -1.14 -23.85 16 13 C -0.03 -1.40 6.89 43.18 0.30 -1.10 16 14 C -0.05 -1.88 9.70 71.23 0.69 -1.19 16 15 C -0.07 -3.96 5.57 -19.67 -0.11 -4.07 16 16 C -0.45 -25.04 7.72 23.22 0.18 -24.86 16 17 H 0.09 4.61 7.51 -2.91 -0.02 4.58 16 18 C 0.02 0.94 5.03 85.22 0.43 1.37 16 19 N -0.80 -47.98 10.40 21.82 0.23 -47.76 16 20 Si 0.98 42.08 29.56 68.60 2.03 44.11 16 21 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 24 C 0.50 28.73 7.43 86.60 0.64 29.37 16 25 O -0.56 -35.64 14.78 -4.56 -0.07 -35.71 16 26 N -0.62 -29.74 5.34 -316.39 -1.69 -31.43 16 27 H 0.40 17.54 8.91 -92.71 -0.83 16.71 16 28 C -0.08 -1.56 6.33 22.44 0.14 -1.42 16 29 Cl -0.06 -0.99 26.25 -2.72 -0.07 -1.07 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.71 8.09 -2.38 -0.02 0.69 16 32 H 0.07 0.83 6.90 -2.39 -0.02 0.82 16 33 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.14 4.47 5.71 -2.91 -0.02 4.46 16 36 H 0.43 6.60 8.12 -92.71 -0.75 5.84 16 37 H 0.40 6.41 8.95 -92.71 -0.83 5.58 16 38 H 0.42 12.18 6.21 -92.71 -0.58 11.61 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.05 2.22 7.09 -2.39 -0.02 2.20 16 42 H 0.28 15.37 8.30 -92.71 -0.77 14.60 16 Total: -1.00 -74.08 365.34 2.76 -71.33 By element: Atomic # 1 Polarization: 47.65 SS G_CDS: -1.83 Total: 45.82 kcal Atomic # 6 Polarization: 28.12 SS G_CDS: 8.06 Total: 36.19 kcal Atomic # 7 Polarization: -155.30 SS G_CDS: -5.37 Total: -160.67 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.07 Total: -35.71 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.07 Total: -1.07 kcal Total: -74.08 2.76 -71.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020503618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.601 kcal (2) G-P(sol) polarization free energy of solvation -74.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds