Wall clock time and date at job start Tue Mar 31 2020 05:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99987 * 2 1 4 4 H 1.48494 * 109.47488 * 269.99536 * 3 2 1 5 5 H 1.48500 * 109.47313 * 29.99985 * 3 2 1 6 6 H 1.48502 * 109.47297 * 149.99751 * 3 2 1 7 7 C 1.37878 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00121 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47397 * 180.02562 * 9 7 2 11 11 C 1.46957 * 110.99434 * 293.79773 * 10 9 7 12 12 C 1.53051 * 109.36247 * 176.80849 * 11 10 9 13 13 N 1.46962 * 109.36374 * 58.40025 * 12 11 10 14 14 C 1.46896 * 110.99940 * 176.80957 * 13 12 11 15 15 H 1.09001 * 109.46932 * 181.16375 * 14 13 12 16 16 C 1.50698 * 109.47074 * 61.16714 * 14 13 12 17 17 O 1.20826 * 120.00346 * 359.97438 * 16 14 13 18 18 O 1.34234 * 119.99816 * 179.97438 * 16 14 13 19 19 C 1.50697 * 109.47725 * 301.16442 * 14 13 12 20 20 C 1.34214 * 126.49621 * 104.21645 * 19 14 13 21 21 N 1.36905 * 109.91939 * 179.83899 * 20 19 14 22 22 H 0.96997 * 125.06645 * 180.18996 * 21 20 19 23 23 C 1.37690 * 109.86578 * 0.44636 * 21 20 19 24 24 C 1.39127 * 133.47136 * 179.76073 * 23 21 20 25 25 C 1.37951 * 119.75645 * 179.97438 * 24 23 21 26 26 F 1.35093 * 119.69146 * 180.02562 * 25 24 23 27 27 C 1.39034 * 120.60740 * 359.97438 * 25 24 23 28 28 C 1.36593 * 120.50958 * 0.04190 * 27 25 24 29 29 C 1.39640 * 119.79821 * 359.95662 * 28 27 25 30 30 C 1.46952 * 110.88145 * 300.68319 * 13 12 11 31 31 C 1.46948 * 111.00148 * 170.00029 * 10 9 7 32 32 H 0.96992 * 119.99997 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.47273 * 59.99760 * 9 7 2 34 34 H 1.09000 * 109.47397 * 299.99867 * 9 7 2 35 35 H 1.08993 * 109.49091 * 296.77487 * 11 10 9 36 36 H 1.09002 * 109.49034 * 56.84890 * 11 10 9 37 37 H 1.09002 * 109.49303 * 298.43662 * 12 11 10 38 38 H 1.09001 * 109.50993 * 178.37698 * 12 11 10 39 39 H 0.96704 * 116.99835 * 179.97438 * 18 16 14 40 40 H 1.08000 * 125.04035 * 0.02562 * 20 19 14 41 41 H 1.07994 * 120.12404 * 359.97438 * 24 23 21 42 42 H 1.08003 * 119.74120 * 180.02562 * 27 25 24 43 43 H 1.07999 * 120.10261 * 180.02562 * 28 27 25 44 44 H 1.09004 * 109.48799 * 299.34696 * 30 13 12 45 45 H 1.09002 * 109.50969 * 179.30008 * 30 13 12 46 46 H 1.09002 * 109.48818 * 303.15004 * 31 10 9 47 47 H 1.09000 * 109.49240 * 63.20075 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6158 0.0018 11 6 2.9696 -3.6568 -1.2530 12 6 4.0051 -4.7815 -1.1801 13 7 3.3202 -6.0597 -0.9417 14 6 4.2748 -7.1762 -0.9406 15 1 3.7389 -8.1122 -0.7827 16 6 5.2776 -6.9785 0.1668 17 8 5.2049 -6.0070 0.8814 18 8 6.2517 -7.8819 0.3592 19 6 4.9921 -7.2254 -2.2650 20 6 6.2512 -6.8280 -2.5061 21 7 6.5587 -7.0274 -3.8252 22 1 7.4123 -6.8190 -4.2361 23 6 5.4737 -7.5624 -4.4829 24 6 5.2468 -7.9451 -5.8011 25 6 4.0202 -8.4629 -6.1622 26 9 3.8013 -8.8346 -7.4424 27 6 3.0075 -8.6068 -5.2204 28 6 3.2108 -8.2365 -3.9214 29 6 4.4452 -7.7102 -3.5349 30 6 2.5562 -6.0186 0.3129 31 6 1.5208 -4.8939 0.2400 32 1 -0.4850 0.8400 -0.0004 33 1 0.6247 -2.5571 -0.8896 34 1 0.6241 -2.5567 0.8903 35 1 2.2911 -3.8406 -2.0860 36 1 3.4777 -2.7038 -1.4007 37 1 4.7001 -4.5837 -0.3640 38 1 4.5537 -4.8327 -2.1206 39 1 6.8716 -7.7118 1.0817 40 1 6.9232 -6.4151 -1.7683 41 1 6.0279 -7.8372 -6.5389 42 1 2.0527 -9.0142 -5.5184 43 1 2.4198 -8.3515 -3.1952 44 1 3.2347 -5.8349 1.1460 45 1 2.0482 -6.9716 0.4612 46 1 0.9725 -4.8428 1.1808 47 1 0.8256 -5.0916 -0.5759 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020744999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:02 Heat of formation + Delta-G solvation = -45.014910 kcal Electronic energy + Delta-G solvation = -32984.618175 eV Core-core repulsion = 28468.988383 eV Total energy + Delta-G solvation = -4515.629792 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.03822 -41.81882 -40.62083 -38.37287 -36.92428 -36.25699 -35.17810 -32.87889 -32.00087 -30.42828 -30.18788 -29.36934 -28.04270 -26.41638 -24.35419 -23.40104 -23.03665 -22.45994 -21.88794 -21.29631 -19.70711 -19.24539 -18.57681 -18.02211 -17.44737 -16.69529 -16.42433 -16.23667 -15.85573 -15.71834 -15.47911 -15.43396 -14.81142 -14.54383 -14.38124 -14.16718 -14.06893 -13.91671 -13.79132 -13.44061 -13.26175 -13.09283 -12.63881 -12.39832 -12.06423 -11.92586 -11.73562 -11.66230 -11.57232 -11.26755 -11.16134 -10.89651 -10.78379 -10.64068 -10.42911 -10.37072 -10.24357 -9.86192 -9.67208 -9.12329 -8.46786 -8.40114 -8.20283 -7.92171 -7.12008 -5.98054 -3.98851 0.74362 1.24121 2.01700 2.25273 2.68976 2.89675 3.34228 3.40234 3.44986 3.50835 4.01902 4.15743 4.39471 4.46388 4.48884 4.60342 4.81531 4.94187 5.02338 5.03532 5.14091 5.22638 5.32818 5.37660 5.39690 5.58214 5.68166 5.80598 5.80668 5.92939 5.95402 6.03626 6.13784 6.17431 6.27442 6.34438 6.37795 6.42110 6.51945 6.70631 6.77385 6.81033 7.05864 7.14259 7.16450 7.39301 7.43196 7.77397 7.86206 8.15970 8.28698 8.62614 9.08945 9.65013 11.12913 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.010064 B = 0.002831 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.547530 B = 9887.944508 C =11093.061189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.073 3.927 12 C 0.041 3.959 13 N -0.497 5.497 14 C 0.171 3.829 15 H 0.124 0.876 16 C 0.443 3.557 17 O -0.490 6.490 18 O -0.519 6.519 19 C -0.146 4.146 20 C 0.071 3.929 21 N -0.588 5.588 22 H 0.419 0.581 23 C 0.121 3.879 24 C -0.170 4.170 25 C 0.119 3.881 26 F -0.140 7.140 27 C -0.179 4.179 28 C -0.026 4.026 29 C -0.090 4.090 30 C 0.040 3.960 31 C 0.061 3.939 32 H 0.260 0.740 33 H -0.009 1.009 34 H 0.029 0.971 35 H 0.026 0.974 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.402 0.598 40 H 0.166 0.834 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.437 -21.763 -7.438 26.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.056 4.056 12 C -0.087 4.087 13 N -0.221 5.221 14 C 0.059 3.941 15 H 0.141 0.859 16 C 0.282 3.718 17 O -0.376 6.376 18 O -0.330 6.330 19 C -0.154 4.154 20 C -0.057 4.057 21 N -0.190 5.190 22 H 0.256 0.744 23 C 0.013 3.987 24 C -0.191 4.191 25 C 0.099 3.901 26 F -0.119 7.119 27 C -0.199 4.199 28 C -0.045 4.045 29 C -0.095 4.095 30 C -0.087 4.087 31 C -0.068 4.068 32 H 0.070 0.930 33 H 0.009 0.991 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.261 0.739 40 H 0.184 0.816 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 13.079 -21.392 -7.614 26.204 hybrid contribution 1.187 1.207 0.055 1.694 sum 14.266 -20.185 -7.559 25.847 Atomic orbital electron populations 1.69957 1.06030 1.26671 1.51230 1.24982 0.94847 0.99236 0.95566 0.86524 0.79841 0.83240 0.77972 1.20793 1.21288 1.19817 1.21166 0.93452 0.89996 1.49722 0.91968 1.19690 0.90039 0.87342 0.96030 1.62254 1.27923 1.02620 1.33240 1.21917 0.95296 0.97253 0.91126 1.22559 0.97251 0.87826 1.01035 1.62788 1.21633 1.03228 1.34429 1.19854 0.88752 0.98751 0.86695 0.85856 1.25387 0.80885 0.79966 0.85531 1.90773 1.71628 1.29168 1.46042 1.84658 1.41034 1.52054 1.55277 1.19371 0.93805 1.09374 0.92834 1.21556 0.96956 1.02057 0.85098 1.41638 1.13580 1.55791 1.07997 0.74360 1.17738 0.88022 1.00065 0.92846 1.19716 0.97722 1.07566 0.94134 1.17171 0.94097 0.99962 0.78885 1.91489 1.95190 1.89257 1.35969 1.20630 0.99465 1.06680 0.93102 1.20174 0.95202 0.93955 0.95145 1.18817 0.94068 1.04485 0.92105 1.22507 0.96613 0.98671 0.90910 1.21995 0.94447 0.89932 1.00408 0.92992 0.99128 0.95271 0.95588 0.89771 0.91367 0.91432 0.73943 0.81649 0.85078 0.84657 0.84463 0.91338 0.91405 0.90986 0.95288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.50 -14.47 8.47 -34.44 -0.29 -14.76 16 8 H 0.06 1.77 7.13 -52.48 -0.37 1.40 16 9 C 0.19 5.19 4.72 -4.97 -0.02 5.17 16 10 N -0.54 -12.00 4.70 -235.92 -1.11 -13.11 16 11 C 0.07 1.49 5.43 -3.77 -0.02 1.47 16 12 C 0.04 0.67 4.97 -3.76 -0.02 0.65 16 13 N -0.50 -7.14 4.71 -229.28 -1.08 -8.22 16 14 C 0.17 1.94 2.84 -70.02 -0.20 1.74 16 15 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 16 C 0.44 5.03 6.00 36.00 0.22 5.25 16 17 O -0.49 -7.34 12.33 -18.75 -0.23 -7.57 16 18 O -0.52 -4.25 12.97 -39.27 -0.51 -4.76 16 19 C -0.15 -1.57 4.30 -102.70 -0.44 -2.01 16 20 C 0.07 0.64 10.17 -16.70 -0.17 0.47 16 21 N -0.59 -4.67 6.07 -10.64 -0.06 -4.73 16 22 H 0.42 2.02 8.96 -40.82 -0.37 1.66 16 23 C 0.12 1.21 7.27 -83.99 -0.61 0.60 16 24 C -0.17 -1.63 10.05 -39.36 -0.40 -2.02 16 25 C 0.12 1.24 7.28 -39.39 -0.29 0.96 16 26 F -0.14 -1.53 17.25 2.25 0.04 -1.49 16 27 C -0.18 -1.77 9.95 -39.88 -0.40 -2.16 16 28 C -0.03 -0.27 10.05 -39.65 -0.40 -0.67 16 29 C -0.09 -0.99 6.35 -105.12 -0.67 -1.66 16 30 C 0.04 0.62 5.24 -3.77 -0.02 0.60 16 31 C 0.06 1.14 5.61 -3.77 -0.02 1.12 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 33 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 34 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 1.85 6.79 -51.93 -0.35 1.50 16 37 H 0.07 1.23 5.54 -51.93 -0.29 0.95 16 38 H 0.07 1.04 6.54 -51.93 -0.34 0.70 16 39 H 0.40 1.79 9.10 45.56 0.41 2.21 16 40 H 0.17 1.26 7.44 -52.49 -0.39 0.87 16 41 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 43 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.07 1.17 5.66 -51.93 -0.29 0.87 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 382.77 15.07 5.77 5.77 Total: -1.00 -34.47 382.77 -10.66 -45.12 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.34 Total: 2.20 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -3.84 Total: -3.78 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -1.52 Total: -52.46 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.74 Total: -12.33 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.47 -10.66 -45.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020744999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.107 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds