Wall clock time and date at job start Tue Mar 31 2020 05:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99987 * 2 1 4 4 H 1.48494 * 109.47488 * 269.99536 * 3 2 1 5 5 H 1.48500 * 109.47313 * 29.99985 * 3 2 1 6 6 H 1.48502 * 109.47297 * 149.99751 * 3 2 1 7 7 C 1.37878 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00121 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47397 * 180.02562 * 9 7 2 11 11 C 1.46957 * 110.99434 * 293.79773 * 10 9 7 12 12 C 1.53051 * 109.36247 * 176.80849 * 11 10 9 13 13 N 1.46962 * 109.36374 * 58.40025 * 12 11 10 14 14 C 1.46896 * 110.99940 * 176.80957 * 13 12 11 15 15 H 1.09001 * 109.46932 * 181.16375 * 14 13 12 16 16 C 1.50698 * 109.47074 * 61.16714 * 14 13 12 17 17 O 1.20826 * 120.00346 * 359.97438 * 16 14 13 18 18 O 1.34234 * 119.99816 * 179.97438 * 16 14 13 19 19 C 1.50697 * 109.47725 * 301.16442 * 14 13 12 20 20 C 1.34214 * 126.49621 * 104.21645 * 19 14 13 21 21 N 1.36905 * 109.91939 * 179.83899 * 20 19 14 22 22 H 0.96997 * 125.06645 * 180.18996 * 21 20 19 23 23 C 1.37690 * 109.86578 * 0.44636 * 21 20 19 24 24 C 1.39127 * 133.47136 * 179.76073 * 23 21 20 25 25 C 1.37951 * 119.75645 * 179.97438 * 24 23 21 26 26 F 1.35093 * 119.69146 * 180.02562 * 25 24 23 27 27 C 1.39034 * 120.60740 * 359.97438 * 25 24 23 28 28 C 1.36593 * 120.50958 * 0.04190 * 27 25 24 29 29 C 1.39640 * 119.79821 * 359.95662 * 28 27 25 30 30 C 1.46952 * 110.88145 * 300.68319 * 13 12 11 31 31 C 1.46948 * 111.00148 * 170.00029 * 10 9 7 32 32 H 0.96992 * 119.99997 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.47273 * 59.99760 * 9 7 2 34 34 H 1.09000 * 109.47397 * 299.99867 * 9 7 2 35 35 H 1.08993 * 109.49091 * 296.77487 * 11 10 9 36 36 H 1.09002 * 109.49034 * 56.84890 * 11 10 9 37 37 H 1.09002 * 109.49303 * 298.43662 * 12 11 10 38 38 H 1.09001 * 109.50993 * 178.37698 * 12 11 10 39 39 H 0.96704 * 116.99835 * 179.97438 * 18 16 14 40 40 H 1.08000 * 125.04035 * 0.02562 * 20 19 14 41 41 H 1.07994 * 120.12404 * 359.97438 * 24 23 21 42 42 H 1.08003 * 119.74120 * 180.02562 * 27 25 24 43 43 H 1.07999 * 120.10261 * 180.02562 * 28 27 25 44 44 H 1.09004 * 109.48799 * 299.34696 * 30 13 12 45 45 H 1.09002 * 109.50969 * 179.30008 * 30 13 12 46 46 H 1.09002 * 109.48818 * 303.15004 * 31 10 9 47 47 H 1.09000 * 109.49240 * 63.20075 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6158 0.0018 11 6 2.9696 -3.6568 -1.2530 12 6 4.0051 -4.7815 -1.1801 13 7 3.3202 -6.0597 -0.9417 14 6 4.2748 -7.1762 -0.9406 15 1 3.7389 -8.1122 -0.7827 16 6 5.2776 -6.9785 0.1668 17 8 5.2049 -6.0070 0.8814 18 8 6.2517 -7.8819 0.3592 19 6 4.9921 -7.2254 -2.2650 20 6 6.2512 -6.8280 -2.5061 21 7 6.5587 -7.0274 -3.8252 22 1 7.4123 -6.8190 -4.2361 23 6 5.4737 -7.5624 -4.4829 24 6 5.2468 -7.9451 -5.8011 25 6 4.0202 -8.4629 -6.1622 26 9 3.8013 -8.8346 -7.4424 27 6 3.0075 -8.6068 -5.2204 28 6 3.2108 -8.2365 -3.9214 29 6 4.4452 -7.7102 -3.5349 30 6 2.5562 -6.0186 0.3129 31 6 1.5208 -4.8939 0.2400 32 1 -0.4850 0.8400 -0.0004 33 1 0.6247 -2.5571 -0.8896 34 1 0.6241 -2.5567 0.8903 35 1 2.2911 -3.8406 -2.0860 36 1 3.4777 -2.7038 -1.4007 37 1 4.7001 -4.5837 -0.3640 38 1 4.5537 -4.8327 -2.1206 39 1 6.8716 -7.7118 1.0817 40 1 6.9232 -6.4151 -1.7683 41 1 6.0279 -7.8372 -6.5389 42 1 2.0527 -9.0142 -5.5184 43 1 2.4198 -8.3515 -3.1952 44 1 3.2347 -5.8349 1.1460 45 1 2.0482 -6.9716 0.4612 46 1 0.9725 -4.8428 1.1808 47 1 0.8256 -5.0916 -0.5759 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020744999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:01 Heat of formation + Delta-G solvation = -70.305386 kcal Electronic energy + Delta-G solvation = -32985.714852 eV Core-core repulsion = 28468.988383 eV Total energy + Delta-G solvation = -4516.726469 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.83247 -42.60679 -41.51837 -39.67656 -37.66467 -37.29041 -36.44245 -34.73075 -33.20948 -31.81955 -31.20205 -30.22676 -29.39425 -27.84056 -25.91099 -24.49400 -24.10096 -23.59228 -22.96800 -22.63670 -20.70407 -20.51504 -19.31841 -18.84381 -18.48321 -18.22622 -17.70202 -17.27153 -16.89441 -16.60065 -16.54653 -16.33038 -16.18976 -15.87598 -15.71352 -15.37269 -15.25532 -14.93232 -14.83702 -14.68412 -14.54613 -14.10378 -13.87349 -13.65702 -13.36814 -13.30887 -12.98810 -12.78188 -12.74283 -12.66606 -12.46039 -12.31571 -12.20313 -12.06300 -11.91447 -11.81666 -11.72787 -11.48852 -11.18946 -10.63824 -10.60663 -9.36414 -9.20587 -8.96421 -8.67972 -8.20429 -6.30611 0.00404 0.48994 1.14894 1.39461 1.41345 1.49285 1.53078 2.01671 2.13952 2.39974 2.71294 2.96129 3.11474 3.33747 3.42386 3.65570 3.74660 3.88067 4.00265 4.09053 4.17517 4.24160 4.28012 4.40699 4.42610 4.48453 4.55379 4.58057 4.68477 4.69313 4.83990 4.89513 5.03418 5.07078 5.08400 5.10822 5.22460 5.24229 5.29370 5.43876 5.59473 5.63297 5.64250 5.72929 5.91310 5.94068 6.06673 6.08167 6.36751 6.58646 6.66439 6.85252 7.03522 7.38889 8.90819 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.010064 B = 0.002831 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.547530 B = 9887.944508 C =11093.061189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.210 3.790 10 N -0.544 5.544 11 C 0.076 3.924 12 C 0.061 3.939 13 N -0.500 5.500 14 C 0.173 3.827 15 H 0.145 0.855 16 C 0.456 3.544 17 O -0.529 6.529 18 O -0.506 6.506 19 C -0.168 4.168 20 C 0.082 3.918 21 N -0.574 5.574 22 H 0.434 0.566 23 C 0.110 3.890 24 C -0.166 4.166 25 C 0.101 3.899 26 F -0.147 7.147 27 C -0.182 4.182 28 C -0.037 4.037 29 C -0.105 4.105 30 C 0.052 3.948 31 C 0.058 3.942 32 H 0.265 0.735 33 H -0.040 1.040 34 H 0.003 0.997 35 H 0.013 0.987 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.422 0.578 40 H 0.183 0.817 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.056 0.944 45 H 0.104 0.896 46 H 0.069 0.931 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.717 -22.817 -7.690 28.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.078 0.922 9 C 0.084 3.916 10 N -0.269 5.269 11 C -0.053 4.053 12 C -0.067 4.067 13 N -0.224 5.224 14 C 0.063 3.937 15 H 0.163 0.837 16 C 0.297 3.703 17 O -0.419 6.419 18 O -0.318 6.318 19 C -0.176 4.176 20 C -0.046 4.046 21 N -0.178 5.178 22 H 0.275 0.725 23 C 0.002 3.998 24 C -0.188 4.188 25 C 0.080 3.920 26 F -0.125 7.125 27 C -0.201 4.201 28 C -0.056 4.056 29 C -0.109 4.109 30 C -0.076 4.076 31 C -0.070 4.070 32 H 0.073 0.927 33 H -0.023 1.023 34 H 0.021 0.979 35 H 0.031 0.969 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.284 0.716 40 H 0.200 0.800 41 H 0.168 0.832 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.074 0.926 45 H 0.122 0.878 46 H 0.088 0.912 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 15.410 -22.497 -7.881 28.385 hybrid contribution 0.521 1.424 0.121 1.521 sum 15.931 -21.073 -7.760 27.533 Atomic orbital electron populations 1.70085 1.07708 1.27901 1.51769 1.25918 0.95767 1.03176 0.94777 0.85383 0.78543 0.78235 0.78464 1.19705 1.20553 1.19026 1.21437 0.93456 0.91165 1.50064 0.92228 1.19329 0.90036 0.89000 0.93231 1.62187 1.27186 1.03142 1.34372 1.21873 0.95561 0.98137 0.89726 1.22243 0.95500 0.87603 1.01334 1.62706 1.22764 1.03022 1.33890 1.19837 0.88686 0.97886 0.87319 0.83726 1.25093 0.81034 0.79435 0.84709 1.90783 1.72741 1.30882 1.47481 1.84590 1.40571 1.50626 1.56024 1.19328 0.94554 1.11250 0.92456 1.21827 0.96679 1.00504 0.85636 1.41633 1.13842 1.54747 1.07550 0.72517 1.17835 0.88522 1.00535 0.92923 1.19905 0.97863 1.06532 0.94474 1.17374 0.94825 1.00947 0.78822 1.91470 1.95281 1.89448 1.36348 1.20815 0.99964 1.06349 0.93022 1.20324 0.95479 0.94290 0.95470 1.19050 0.94612 1.04699 0.92584 1.22385 0.95639 0.98584 0.90961 1.22102 0.95526 0.89405 1.00012 0.92654 1.02256 0.97866 0.96866 0.91998 0.92479 0.89981 0.71633 0.80000 0.83246 0.83453 0.83647 0.92631 0.87819 0.91214 0.95731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.52 -30.90 8.47 25.60 0.22 -30.68 16 8 H 0.06 3.48 7.13 -2.91 -0.02 3.46 16 9 C 0.21 11.83 4.72 85.55 0.40 12.23 16 10 N -0.54 -25.26 4.70 -900.30 -4.23 -29.49 16 11 C 0.08 3.18 5.43 86.31 0.47 3.65 16 12 C 0.06 1.98 4.97 86.31 0.43 2.41 16 13 N -0.50 -13.67 4.71 -879.29 -4.14 -17.81 16 14 C 0.17 3.50 2.84 43.42 0.12 3.63 16 15 H 0.15 2.33 8.14 -2.39 -0.02 2.31 16 16 C 0.46 9.21 6.00 71.24 0.43 9.63 16 17 O -0.53 -15.04 12.33 21.96 0.27 -14.77 16 18 O -0.51 -6.57 12.97 -51.45 -0.67 -7.24 16 19 C -0.17 -3.19 4.30 -18.62 -0.08 -3.27 16 20 C 0.08 1.26 10.17 82.98 0.84 2.10 16 21 N -0.57 -7.54 6.07 -187.58 -1.14 -8.68 16 22 H 0.43 2.88 8.96 -92.71 -0.83 2.05 16 23 C 0.11 1.97 7.27 39.03 0.28 2.26 16 24 C -0.17 -2.90 10.05 22.42 0.23 -2.68 16 25 C 0.10 1.99 7.28 22.39 0.16 2.16 16 26 F -0.15 -3.09 17.25 44.97 0.78 -2.32 16 27 C -0.18 -3.41 9.95 22.08 0.22 -3.19 16 28 C -0.04 -0.71 10.05 22.22 0.22 -0.49 16 29 C -0.10 -2.11 6.35 -20.19 -0.13 -2.24 16 30 C 0.05 1.52 5.24 86.31 0.45 1.98 16 31 C 0.06 2.21 5.61 86.31 0.48 2.69 16 32 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 33 H -0.04 -2.46 8.12 -2.39 -0.02 -2.48 16 34 H 0.00 0.20 8.03 -2.39 -0.02 0.18 16 35 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.06 2.82 6.79 -2.39 -0.02 2.81 16 37 H 0.06 2.03 5.54 -2.39 -0.01 2.02 16 38 H 0.08 2.41 6.54 -2.39 -0.02 2.40 16 39 H 0.42 2.32 9.10 -74.05 -0.67 1.64 16 40 H 0.18 2.15 7.44 -2.91 -0.02 2.13 16 41 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 43 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 44 H 0.06 1.84 5.66 -2.38 -0.01 1.82 16 45 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.07 2.63 8.07 -2.39 -0.02 2.61 16 47 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -76.56 382.77 -2.07 -78.63 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -0.46 Total: 10.88 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 5.22 Total: 0.72 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -9.23 Total: -113.39 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.40 Total: -22.01 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -76.56 -2.07 -78.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020744999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.321 kcal (2) G-P(sol) polarization free energy of solvation -76.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds