Wall clock time and date at job start Tue Mar 31 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99588 * 2 1 4 4 H 1.48499 * 109.47267 * 269.99783 * 3 2 1 5 5 H 1.48505 * 109.47062 * 29.99963 * 3 2 1 6 6 H 1.48496 * 109.46947 * 149.99606 * 3 2 1 7 7 C 1.37877 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99663 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99793 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.46882 * 180.02562 * 9 7 2 11 11 C 1.46963 * 110.99595 * 66.17766 * 10 9 7 12 12 C 1.53056 * 109.35944 * 183.16796 * 11 10 9 13 13 N 1.46956 * 109.38342 * 301.62902 * 12 11 10 14 14 C 1.46899 * 111.00293 * 183.17592 * 13 12 11 15 15 H 1.08993 * 109.47127 * 300.00706 * 14 13 12 16 16 C 1.50708 * 109.46572 * 60.00072 * 14 13 12 17 17 O 1.20820 * 120.00145 * 0.02562 * 16 14 13 18 18 O 1.34224 * 119.99739 * 179.97438 * 16 14 13 19 19 C 1.50699 * 109.47316 * 180.02562 * 14 13 12 20 20 C 1.34204 * 126.49782 * 340.02953 * 19 14 13 21 21 N 1.36910 * 109.92172 * 179.97438 * 20 19 14 22 22 H 0.96995 * 125.06480 * 179.97438 * 21 20 19 23 23 C 1.37679 * 109.86474 * 0.02562 * 21 20 19 24 24 C 1.39128 * 133.47638 * 180.02562 * 23 21 20 25 25 C 1.37950 * 119.75958 * 179.24552 * 24 23 21 26 26 F 1.35100 * 119.69506 * 180.20569 * 25 24 23 27 27 C 1.39031 * 120.60827 * 0.62715 * 25 24 23 28 28 C 1.36599 * 120.50615 * 359.59974 * 27 25 24 29 29 C 1.39632 * 119.80128 * 0.02562 * 28 27 25 30 30 C 1.46962 * 110.87987 * 59.31148 * 13 12 11 31 31 C 1.46956 * 111.00102 * 189.99751 * 10 9 7 32 32 H 0.96996 * 120.00421 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.47655 * 60.00120 * 9 7 2 34 34 H 1.08997 * 109.47272 * 299.99809 * 9 7 2 35 35 H 1.08992 * 109.47287 * 63.21185 * 11 10 9 36 36 H 1.08994 * 109.50466 * 303.13858 * 11 10 9 37 37 H 1.09002 * 109.48813 * 181.65179 * 12 11 10 38 38 H 1.09002 * 109.48870 * 61.61068 * 12 11 10 39 39 H 0.96701 * 117.00070 * 180.02562 * 18 16 14 40 40 H 1.07998 * 125.04147 * 359.93625 * 20 19 14 41 41 H 1.08000 * 120.11999 * 359.97438 * 24 23 21 42 42 H 1.08009 * 119.74374 * 179.58312 * 27 25 24 43 43 H 1.07999 * 120.10343 * 180.02562 * 28 27 25 44 44 H 1.09001 * 109.48625 * 60.64585 * 30 13 12 45 45 H 1.09003 * 109.48941 * 180.69193 * 30 13 12 46 46 H 1.09002 * 109.48806 * 56.84348 * 31 10 9 47 47 H 1.09003 * 109.49203 * 296.77991 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0011 10 7 4.0014 -2.5788 0.0010 11 6 3.6550 -3.2597 -1.2545 12 6 4.1119 -4.7187 -1.1831 13 7 5.5612 -4.7649 -0.9444 14 6 6.0510 -6.1498 -0.9444 15 1 5.5490 -6.7127 -0.1576 16 6 5.7608 -6.7851 -2.2799 17 8 5.2036 -6.1493 -3.1430 18 8 6.1222 -8.0570 -2.5106 19 6 7.5374 -6.1570 -0.6966 20 6 8.3804 -5.1271 -0.8691 21 7 9.6545 -5.5074 -0.5427 22 1 10.4358 -4.9343 -0.5874 23 6 9.6616 -6.8248 -0.1428 24 6 10.6635 -7.6898 0.2856 25 6 10.3449 -8.9841 0.6410 26 9 11.3182 -9.8217 1.0608 27 6 9.0328 -9.4371 0.5629 28 6 8.0358 -8.6045 0.1403 29 6 8.3355 -7.2883 -0.2168 30 6 5.9071 -4.0840 0.3112 31 6 5.4507 -2.6249 0.2397 32 1 -0.4850 0.8400 -0.0004 33 1 3.8746 -0.6798 0.8911 34 1 3.8753 -0.6802 -0.8888 35 1 4.1533 -2.7629 -2.0868 36 1 2.5757 -3.2235 -1.4023 37 1 3.8823 -5.2181 -2.1244 38 1 3.5928 -5.2229 -0.3679 39 1 5.9152 -8.4210 -3.3823 40 1 8.0961 -4.1442 -1.2148 41 1 11.6851 -7.3458 0.3509 42 1 8.8001 -10.4552 0.8383 43 1 7.0187 -8.9630 0.0825 44 1 5.4084 -4.5807 1.1435 45 1 6.9864 -4.1209 0.4595 46 1 5.6803 -2.1255 1.1810 47 1 5.9698 -2.1210 -0.5756 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020745000.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:05 Heat of formation + Delta-G solvation = -64.561515 kcal Electronic energy + Delta-G solvation = -32625.935699 eV Core-core repulsion = 28109.458303 eV Total energy + Delta-G solvation = -4516.477396 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.83025 -42.54943 -41.30853 -39.89947 -37.73489 -37.19989 -36.60353 -34.67606 -33.29852 -31.88496 -31.32780 -30.33408 -29.34803 -28.32454 -25.83519 -24.60753 -24.07008 -23.03445 -22.82686 -22.67498 -20.83567 -20.44316 -19.29874 -18.89913 -18.81009 -18.20049 -17.64893 -17.33900 -16.99014 -16.58931 -16.52903 -16.31348 -16.17796 -15.85507 -15.53234 -15.37790 -15.26122 -15.09365 -14.83973 -14.75360 -14.58213 -14.28100 -13.96347 -13.82652 -13.57582 -13.22904 -13.10594 -12.95132 -12.64531 -12.51199 -12.43306 -12.32160 -12.19319 -12.15139 -12.03159 -11.76638 -11.67244 -11.30024 -11.15559 -10.77670 -10.53653 -9.47568 -9.20657 -9.01308 -8.68375 -8.26709 -6.30014 -0.00624 0.46850 1.16500 1.35838 1.37324 1.48269 1.53344 2.01097 2.07026 2.35778 2.72813 2.89894 3.05886 3.24912 3.41586 3.66264 3.75524 3.89805 3.95486 4.10931 4.19006 4.20526 4.32410 4.37899 4.39752 4.42607 4.51613 4.54984 4.65903 4.68435 4.83454 4.85505 4.89757 4.99324 5.02275 5.07460 5.13432 5.18020 5.21439 5.42124 5.55114 5.57927 5.64158 5.71769 5.85889 5.93091 6.03053 6.10095 6.37342 6.59303 6.68400 6.76180 7.08252 7.33492 8.89936 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.018244 B = 0.002289 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.417872 B =12228.958486 C =13060.526435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.005 3.995 3 Si 0.949 3.051 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.245 1.245 7 C -0.515 4.515 8 H 0.036 0.964 9 C 0.173 3.827 10 N -0.545 5.545 11 C 0.077 3.923 12 C 0.060 3.940 13 N -0.522 5.522 14 C 0.177 3.823 15 H 0.092 0.908 16 C 0.493 3.507 17 O -0.529 6.529 18 O -0.502 6.502 19 C -0.187 4.187 20 C 0.100 3.900 21 N -0.576 5.576 22 H 0.435 0.565 23 C 0.110 3.890 24 C -0.165 4.165 25 C 0.101 3.899 26 F -0.146 7.146 27 C -0.178 4.178 28 C -0.037 4.037 29 C -0.108 4.108 30 C 0.066 3.934 31 C 0.053 3.947 32 H 0.266 0.734 33 H 0.034 0.966 34 H -0.016 1.016 35 H 0.024 0.976 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.034 0.966 39 H 0.426 0.574 40 H 0.192 0.808 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.040 0.960 45 H 0.111 0.889 46 H 0.085 0.915 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.629 -18.166 -1.036 31.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.169 1.169 7 C -0.553 4.553 8 H 0.054 0.946 9 C 0.046 3.954 10 N -0.270 5.270 11 C -0.051 4.051 12 C -0.068 4.068 13 N -0.249 5.249 14 C 0.067 3.933 15 H 0.109 0.891 16 C 0.335 3.665 17 O -0.418 6.418 18 O -0.315 6.315 19 C -0.195 4.195 20 C -0.028 4.028 21 N -0.180 5.180 22 H 0.275 0.725 23 C 0.002 3.998 24 C -0.187 4.187 25 C 0.081 3.919 26 F -0.125 7.125 27 C -0.198 4.198 28 C -0.056 4.056 29 C -0.113 4.113 30 C -0.061 4.061 31 C -0.075 4.075 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.002 0.998 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.052 0.948 39 H 0.288 0.712 40 H 0.209 0.791 41 H 0.167 0.833 42 H 0.168 0.832 43 H 0.162 0.838 44 H 0.058 0.942 45 H 0.129 0.871 46 H 0.103 0.897 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 25.572 -17.663 -0.884 31.092 hybrid contribution -0.215 0.786 -0.684 1.064 sum 25.357 -16.877 -1.568 30.500 Atomic orbital electron populations 1.70055 1.08165 1.28069 1.52702 1.25876 0.95627 1.03229 0.94423 0.85690 0.79576 0.78521 0.78974 1.19587 1.20759 1.16889 1.21268 0.91201 0.93167 1.49714 0.94559 1.19911 0.94140 0.86345 0.95009 1.62049 1.13451 1.17006 1.34456 1.21826 0.99643 0.93614 0.90023 1.22341 0.86490 0.96230 1.01745 1.61845 1.14416 1.12844 1.35757 1.19119 0.93072 0.89800 0.91327 0.89073 1.23230 0.73641 0.79840 0.89754 1.90686 1.40057 1.63801 1.47242 1.84477 1.76113 1.27620 1.43270 1.19340 0.91905 0.94323 1.13905 1.21988 0.82180 1.00097 0.98530 1.41781 1.09647 1.09282 1.57253 0.72453 1.17837 0.94478 0.85761 1.01688 1.19919 0.99664 0.91988 1.07088 1.17369 0.85742 0.87931 1.00874 1.91478 1.62282 1.70848 1.87909 1.20807 0.90732 1.02279 1.05933 1.20277 0.99984 0.90630 0.94679 1.19085 0.92219 0.94613 1.05409 1.22326 1.02001 0.92811 0.88933 1.22258 0.87426 0.96710 1.01155 0.92490 0.94814 0.99801 0.95775 0.92575 0.88562 0.94764 0.71242 0.79124 0.83291 0.83214 0.83774 0.94195 0.87122 0.89690 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 2 C 0.01 0.32 5.47 84.65 0.46 0.79 16 3 Si 0.95 44.10 27.47 68.60 1.88 45.99 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.25 -10.45 6.54 99.48 0.65 -9.79 16 7 C -0.52 -30.03 9.03 25.60 0.23 -29.80 16 8 H 0.04 2.37 7.37 -2.91 -0.02 2.35 16 9 C 0.17 8.28 3.79 85.56 0.32 8.61 16 10 N -0.54 -22.37 4.70 -900.27 -4.23 -26.60 16 11 C 0.08 3.11 5.43 86.31 0.47 3.58 16 12 C 0.06 1.93 5.21 86.31 0.45 2.38 16 13 N -0.52 -13.50 4.00 -879.26 -3.51 -17.01 16 14 C 0.18 3.75 2.50 43.43 0.11 3.86 16 15 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 16 C 0.49 10.96 7.32 71.24 0.52 11.49 16 17 O -0.53 -15.48 14.59 21.98 0.32 -15.16 16 18 O -0.50 -7.71 13.34 -51.36 -0.69 -8.40 16 19 C -0.19 -3.39 4.68 -18.62 -0.09 -3.47 16 20 C 0.10 1.50 9.24 82.98 0.77 2.27 16 21 N -0.58 -6.66 6.07 -187.58 -1.14 -7.80 16 22 H 0.43 2.31 8.96 -92.71 -0.83 1.48 16 23 C 0.11 1.70 7.28 39.03 0.28 1.99 16 24 C -0.17 -2.41 10.05 22.42 0.23 -2.18 16 25 C 0.10 1.66 7.28 22.39 0.16 1.82 16 26 F -0.15 -2.61 17.25 44.97 0.78 -1.84 16 27 C -0.18 -2.64 9.95 22.08 0.22 -2.42 16 28 C -0.04 -0.58 10.05 22.22 0.22 -0.36 16 29 C -0.11 -1.89 6.35 -20.19 -0.13 -2.01 16 30 C 0.07 1.61 4.98 86.31 0.43 2.04 16 31 C 0.05 1.60 5.61 86.31 0.48 2.09 16 32 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 33 H 0.03 1.58 7.08 -2.39 -0.02 1.56 16 34 H -0.02 -0.75 7.55 -2.39 -0.02 -0.77 16 35 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 2.62 6.79 -2.39 -0.02 2.61 16 37 H 0.10 3.20 5.30 -2.39 -0.01 3.18 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.43 3.20 9.10 -74.06 -0.67 2.52 16 40 H 0.19 2.60 7.34 -2.91 -0.02 2.58 16 41 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 42 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 44 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.11 2.03 5.09 -2.39 -0.01 2.02 16 46 H 0.08 2.40 8.07 -2.39 -0.02 2.39 16 47 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -75.72 382.20 -1.66 -77.38 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -0.52 Total: 12.35 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 5.15 Total: 0.64 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -8.59 Total: -110.97 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.36 Total: -23.55 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.84 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Total: -75.72 -1.66 -77.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020745000.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.816 kcal (2) G-P(sol) polarization free energy of solvation -75.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds