Wall clock time and date at job start Tue Mar 31 2020 04:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35169 * 125.60802 * 2 1 4 4 C 1.40310 * 107.12345 * 180.02562 * 3 2 1 5 5 C 1.36642 * 106.70410 * 0.02562 * 4 3 2 6 6 C 1.46468 * 125.99797 * 179.97438 * 5 4 3 7 7 O 1.21619 * 119.99752 * 0.02562 * 6 5 4 8 8 O 1.34900 * 120.00226 * 179.97438 * 6 5 4 9 9 C 1.45194 * 116.99944 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47026 * 180.02562 * 9 8 6 11 11 O 1.21291 * 119.99949 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00099 * 180.02562 * 10 9 8 13 13 C 1.39938 * 120.00173 * 185.73862 * 12 10 9 14 14 C 1.38684 * 120.11224 * 24.75033 * 13 12 10 15 15 C 1.38220 * 120.01894 * 180.02562 * 14 13 12 16 16 C 1.38394 * 120.24875 * 359.96079 * 15 14 13 17 17 C 1.38081 * 120.23064 * 0.02562 * 16 15 14 18 18 C 1.38994 * 119.97779 * 0.03492 * 17 16 15 19 19 S 1.76195 * 120.12502 * 179.97438 * 18 17 16 20 20 C 1.76203 * 100.00020 * 5.61963 * 19 18 17 21 21 H 1.07993 * 119.99677 * 354.96047 * 20 19 18 22 22 C 1.38687 * 119.99706 * 174.96929 * 20 19 18 23 23 N 1.31653 * 119.99452 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00514 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46999 * 90.00064 * 24 22 20 26 26 H 1.48496 * 109.47505 * 210.00502 * 24 22 20 27 27 H 1.48503 * 109.47162 * 330.00382 * 24 22 20 28 28 O 1.33912 * 125.60741 * 180.32934 * 2 1 3 29 29 H 1.08997 * 109.47102 * 89.99456 * 1 2 3 30 30 H 1.08998 * 109.47472 * 209.99938 * 1 2 3 31 31 H 1.09006 * 109.46894 * 330.00008 * 1 2 3 32 32 H 1.07995 * 126.43990 * 0.02562 * 3 2 1 33 33 H 1.07994 * 126.64737 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47189 * 60.00395 * 9 8 6 35 35 H 1.08997 * 109.47559 * 300.00327 * 9 8 6 36 36 H 0.97001 * 119.99900 * 5.72904 * 12 10 9 37 37 H 1.07998 * 119.98998 * 0.02562 * 14 13 12 38 38 H 1.08000 * 119.87651 * 179.97438 * 15 14 13 39 39 H 1.08000 * 119.88668 * 179.74737 * 16 15 14 40 40 H 1.08001 * 120.01017 * 179.97438 * 17 16 15 41 41 H 0.97004 * 119.99986 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0989 0.0000 4 6 3.6248 0.6541 -0.0006 5 6 3.5823 -0.7117 -0.0015 6 6 4.7400 -1.6089 -0.0029 7 8 5.8658 -1.1489 -0.0029 8 8 4.5574 -2.9455 -0.0032 9 6 5.7500 -3.7737 -0.0040 10 6 5.3523 -5.2272 -0.0049 11 8 4.1790 -5.5349 -0.0043 12 7 6.3002 -6.1853 -0.0052 13 6 5.9351 -7.5307 -0.1272 14 6 4.7406 -7.8746 -0.7421 15 6 4.3817 -9.2040 -0.8610 16 6 5.2110 -10.1968 -0.3690 17 6 6.4028 -9.8661 0.2448 18 6 6.7725 -8.5321 0.3706 19 16 8.2922 -8.1057 1.1538 20 6 8.9688 -9.7132 1.4044 21 1 8.3866 -10.5886 1.1575 22 6 10.2490 -9.8542 1.9189 23 7 10.7543 -11.0553 2.1066 24 14 11.2562 -8.3400 2.3456 25 1 10.9993 -7.9562 3.7570 26 1 12.6998 -8.6397 2.1690 27 1 10.8700 -7.2201 1.4500 28 8 2.2867 -1.0887 -0.0063 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9612 2.1263 0.0004 33 1 4.5108 1.2715 -0.0011 34 1 6.3420 -3.5592 0.8857 35 1 6.3412 -3.5586 -0.8942 36 1 7.2354 -5.9422 0.0789 37 1 4.0905 -7.1033 -1.1281 38 1 3.4507 -9.4692 -1.3399 39 1 4.9229 -11.2335 -0.4615 40 1 7.0471 -10.6436 0.6278 41 1 11.6498 -11.1539 2.4662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021177912.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:20 Heat of formation + Delta-G solvation = -84.473715 kcal Electronic energy + Delta-G solvation = -27802.401548 eV Core-core repulsion = 23547.314930 eV Total energy + Delta-G solvation = -4255.086618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.086 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.83930 -41.94533 -41.19777 -39.33597 -37.74510 -35.97895 -34.78746 -34.38643 -33.13799 -31.99033 -31.60192 -29.61902 -28.15766 -28.02753 -24.51421 -23.99396 -23.46637 -22.74141 -21.67212 -21.55554 -20.31170 -19.76360 -18.82314 -18.22460 -18.05171 -18.00220 -17.62876 -17.29673 -17.14598 -16.42947 -16.29434 -15.80850 -15.53743 -15.27055 -15.05723 -14.50294 -14.43446 -14.31474 -14.20190 -14.04726 -13.93599 -13.89731 -13.72220 -13.71744 -13.11608 -12.98782 -12.87584 -12.83444 -12.37909 -12.24222 -12.10664 -11.71499 -11.51257 -11.38301 -11.15515 -10.94439 -10.85350 -10.58020 -9.66443 -9.30448 -8.59133 -8.55358 -6.31957 -0.34677 0.22883 0.43534 0.80214 1.00309 1.16148 1.29522 1.34653 1.39206 1.55852 1.65359 1.69974 2.13851 2.19241 2.50041 2.77787 2.89870 3.28674 3.46585 3.76725 3.81277 3.91161 3.93254 3.99489 4.21991 4.42011 4.42639 4.49943 4.55493 4.59002 4.64335 4.70947 4.80395 4.92427 4.95589 5.09085 5.23829 5.32040 5.38367 5.51063 5.63710 5.68170 5.77268 6.06073 6.19889 6.20252 6.36582 6.82965 6.83290 8.53913 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.002131 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.134170 B =13136.163133 C =14891.343906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.037 3.963 3 C -0.228 4.228 4 C -0.086 4.086 5 C -0.111 4.111 6 C 0.557 3.443 7 O -0.502 6.502 8 O -0.339 6.339 9 C 0.053 3.947 10 C 0.518 3.482 11 O -0.533 6.533 12 N -0.649 5.649 13 C 0.133 3.867 14 C -0.123 4.123 15 C -0.119 4.119 16 C -0.116 4.116 17 C -0.135 4.135 18 C -0.111 4.111 19 S -0.047 6.047 20 C -0.550 4.550 21 H 0.083 0.917 22 C 0.046 3.954 23 N -0.909 5.909 24 Si 0.911 3.089 25 H -0.262 1.262 26 H -0.261 1.261 27 H -0.218 1.218 28 O -0.173 6.173 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.195 0.805 33 H 0.180 0.820 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.422 0.578 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.144 0.856 40 H 0.121 0.879 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.886 24.815 -6.407 31.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.016 4.016 3 C -0.247 4.247 4 C -0.106 4.106 5 C -0.160 4.160 6 C 0.403 3.597 7 O -0.393 6.393 8 O -0.254 6.254 9 C -0.024 4.024 10 C 0.306 3.694 11 O -0.409 6.409 12 N -0.295 5.295 13 C 0.032 3.968 14 C -0.144 4.144 15 C -0.141 4.141 16 C -0.136 4.136 17 C -0.160 4.160 18 C -0.227 4.227 19 S 0.202 5.798 20 C -0.697 4.697 21 H 0.101 0.899 22 C -0.160 4.160 23 N -0.545 5.545 24 Si 0.731 3.269 25 H -0.186 1.186 26 H -0.185 1.185 27 H -0.141 1.141 28 O -0.069 6.069 29 H 0.123 0.877 30 H 0.100 0.900 31 H 0.141 0.859 32 H 0.212 0.788 33 H 0.197 0.803 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.260 0.740 37 H 0.162 0.838 38 H 0.172 0.828 39 H 0.162 0.838 40 H 0.138 0.862 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.627 25.428 -5.970 31.511 hybrid contribution 1.205 -1.518 0.210 1.949 sum -16.422 23.911 -5.760 29.573 Atomic orbital electron populations 1.20751 0.81442 1.06135 1.05637 1.23952 0.96200 0.83516 0.97962 1.22041 0.90765 1.01496 1.10363 1.22363 1.00700 0.91160 0.96360 1.20589 0.81293 0.93097 1.21042 1.19372 0.87012 0.80488 0.72826 1.90945 1.23331 1.77261 1.47757 1.86673 1.36979 1.17747 1.84003 1.22843 0.85945 0.85253 1.08331 1.20438 0.85487 0.87525 0.75994 1.90698 1.18942 1.83194 1.48113 1.43190 1.11255 1.03733 1.71358 1.17286 0.96390 0.82036 1.01114 1.21333 0.95632 0.98000 0.99438 1.21289 1.00601 0.91407 1.00756 1.21304 0.93341 1.00714 0.98247 1.21399 0.98315 0.94925 1.01361 1.21896 1.00457 0.96191 1.04121 1.82028 1.13883 1.13460 1.70454 1.22870 1.04463 0.91925 1.50427 0.89924 1.25702 0.97538 0.99479 0.93319 1.70022 1.17726 1.23900 1.42868 0.85955 0.79417 0.80557 0.80925 1.18649 1.18506 1.14060 1.84135 1.15752 1.36283 1.70748 0.87667 0.89955 0.85866 0.78762 0.80292 0.85146 0.84538 0.73981 0.83806 0.82777 0.83820 0.86182 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.41 71.24 0.74 0.33 16 2 C 0.04 0.50 7.31 24.98 0.18 0.68 16 3 C -0.23 -2.58 10.77 22.07 0.24 -2.34 16 4 C -0.09 -1.39 10.62 22.40 0.24 -1.15 16 5 C -0.11 -2.47 7.18 24.04 0.17 -2.30 16 6 C 0.56 13.95 7.93 69.97 0.55 14.51 16 7 O -0.50 -13.22 16.66 19.45 0.32 -12.90 16 8 O -0.34 -9.12 9.77 -51.14 -0.50 -9.62 16 9 C 0.05 1.18 5.96 71.24 0.42 1.60 16 10 C 0.52 15.14 7.71 87.66 0.68 15.82 16 11 O -0.53 -19.16 13.68 15.74 0.22 -18.94 16 12 N -0.65 -19.88 5.17 -303.00 -1.57 -21.45 16 13 C 0.13 4.91 6.44 38.31 0.25 5.15 16 14 C -0.12 -4.19 8.71 22.37 0.19 -3.99 16 15 C -0.12 -3.64 10.04 22.30 0.22 -3.42 16 16 C -0.12 -3.91 10.03 22.27 0.22 -3.68 16 17 C -0.14 -5.68 9.26 22.41 0.21 -5.47 16 18 C -0.11 -4.68 6.12 22.81 0.14 -4.54 16 19 S -0.05 -2.13 18.34 -56.49 -1.04 -3.16 16 20 C -0.55 -30.32 9.62 67.93 0.65 -29.67 16 21 H 0.08 4.91 5.04 -2.91 -0.01 4.90 16 22 C 0.05 2.54 5.50 84.83 0.47 3.01 16 23 N -0.91 -53.03 13.97 21.63 0.30 -52.73 16 24 Si 0.91 40.21 27.73 68.60 1.90 42.11 16 25 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.22 -8.82 6.74 99.48 0.67 -8.15 16 28 O -0.17 -3.81 10.67 -4.85 -0.05 -3.86 16 29 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.12 -0.05 8.14 -2.38 -0.02 -0.07 16 32 H 0.20 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 34 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.42 11.41 7.65 -92.71 -0.71 10.71 16 37 H 0.14 4.83 5.79 -2.91 -0.02 4.81 16 38 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 39 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 40 H 0.12 5.69 4.93 -2.91 -0.01 5.67 16 41 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -74.58 375.21 5.54 -69.04 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.37 Total: 26.97 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 5.58 Total: -15.47 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -1.26 Total: -74.17 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -0.01 Total: -45.32 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 1.90 Total: 42.11 kcal Atomic # 16 Polarization: -2.13 SS G_CDS: -1.04 Total: -3.16 kcal Total: -74.58 5.54 -69.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021177912.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.431 kcal (2) G-P(sol) polarization free energy of solvation -74.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds