Wall clock time and date at job start Tue Mar 31 2020 05:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46964 * 2 1 4 4 C 1.36013 * 116.99555 * 179.97438 * 3 2 1 5 5 C 1.38500 * 120.08378 * 359.97438 * 4 3 2 6 6 C 1.38288 * 120.02064 * 180.02562 * 5 4 3 7 7 C 1.38252 * 120.17653 * 359.97438 * 6 5 4 8 8 C 1.38222 * 120.16182 * 359.71882 * 7 6 5 9 9 C 1.38722 * 119.97983 * 0.57552 * 8 7 6 10 10 N 1.39965 * 120.09011 * 179.69794 * 9 8 7 11 11 C 1.46963 * 110.99906 * 246.25643 * 10 9 8 12 12 C 1.53054 * 109.36041 * 183.18707 * 11 10 9 13 13 N 1.46957 * 109.36882 * 301.60180 * 12 11 10 14 14 C 1.46896 * 110.99868 * 183.19360 * 13 12 11 15 15 C 1.50700 * 109.46771 * 170.00175 * 14 13 12 16 16 O 1.21281 * 120.00512 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99733 * 179.97438 * 15 14 13 18 18 C 1.46501 * 120.00425 * 359.97438 * 17 15 14 19 19 C 1.46508 * 120.00140 * 179.97438 * 17 15 14 20 20 C 1.50701 * 109.46738 * 89.99866 * 19 17 15 21 21 H 1.08004 * 120.00411 * 0.02562 * 20 19 17 22 22 C 1.37881 * 119.99851 * 180.02562 * 20 19 17 23 23 N 1.31514 * 119.99876 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99893 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47338 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46948 * 120.00152 * 24 22 20 27 27 H 1.48503 * 109.47160 * 239.99488 * 24 22 20 28 28 C 1.46950 * 110.88139 * 59.31978 * 13 12 11 29 29 C 1.46958 * 111.00134 * 10.05521 * 10 9 8 30 30 H 1.09001 * 109.47199 * 60.00022 * 1 2 3 31 31 H 1.08997 * 109.47019 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47248 * 300.00048 * 1 2 3 33 33 H 1.08994 * 109.47248 * 239.99952 * 2 1 3 34 34 H 1.09001 * 109.47199 * 119.99978 * 2 1 3 35 35 H 1.07998 * 119.99226 * 0.02562 * 5 4 3 36 36 H 1.07999 * 119.90905 * 179.97438 * 6 5 4 37 37 H 1.08003 * 119.92026 * 180.02562 * 7 6 5 38 38 H 1.08002 * 120.01258 * 180.30256 * 8 7 6 39 39 H 1.08998 * 109.48808 * 63.22721 * 11 10 9 40 40 H 1.08993 * 109.48748 * 303.15378 * 11 10 9 41 41 H 1.09004 * 109.48507 * 181.62795 * 12 11 10 42 42 H 1.09002 * 109.50584 * 61.58210 * 12 11 10 43 43 H 1.09008 * 109.46780 * 289.99341 * 14 13 12 44 44 H 1.08994 * 109.47551 * 49.99420 * 14 13 12 45 45 H 1.08999 * 109.47298 * 89.99775 * 18 17 15 46 46 H 1.08996 * 109.47149 * 210.00056 * 18 17 15 47 47 H 1.09004 * 109.46948 * 330.00434 * 18 17 15 48 48 H 1.08996 * 109.47538 * 209.99770 * 19 17 15 49 49 H 1.08999 * 109.47044 * 330.00423 * 19 17 15 50 50 H 0.96996 * 119.99851 * 180.02562 * 23 22 20 51 51 H 1.08995 * 109.49152 * 60.64781 * 28 13 12 52 52 H 1.09001 * 109.49213 * 180.71487 * 28 13 12 53 53 H 1.08996 * 109.49008 * 296.78161 * 29 10 9 54 54 H 1.09000 * 109.48731 * 56.82368 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3547 1.5255 0.0005 5 6 4.2000 0.4283 0.0016 6 6 5.5707 0.6109 0.0027 7 6 6.1017 1.8874 0.0022 8 6 5.2651 2.9876 -0.0053 9 6 3.8890 2.8121 -0.0002 10 7 3.0397 3.9246 -0.0013 11 6 2.2851 4.0124 1.2567 12 6 1.3131 5.1924 1.1841 13 7 2.0665 6.4299 0.9377 14 6 1.1751 7.5975 0.9365 15 6 1.9996 8.8589 0.9280 16 8 3.2105 8.7919 0.9237 17 7 1.3912 10.0615 0.9250 18 6 -0.0715 10.1426 0.9296 19 6 2.1927 11.2879 0.9172 20 6 2.4627 11.7024 -0.5063 21 1 2.0757 11.1117 -1.3235 22 6 3.2040 12.8358 -0.7655 23 7 3.6748 13.5553 0.2295 24 14 3.5393 13.3492 -2.5300 25 1 2.9036 12.3789 -3.4572 26 1 2.9754 14.7023 -2.7674 27 1 5.0049 13.3750 -2.7680 28 6 2.8210 6.3421 -0.3203 29 6 3.7931 5.1621 -0.2477 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.7884 -0.5702 0.0016 36 1 6.2282 -0.2459 0.0039 37 1 7.1729 2.0252 0.0026 38 1 5.6825 3.9837 -0.0106 39 1 2.9767 4.1615 2.0859 40 1 1.7259 3.0896 1.4104 41 1 0.7729 5.2771 2.1270 42 1 0.6041 5.0305 0.3721 43 1 0.5426 7.5708 0.0491 44 1 0.5497 7.5781 1.8291 45 1 -0.4309 10.1670 1.9583 46 1 -0.3868 11.0492 0.4130 47 1 -0.4853 9.2719 0.4208 48 1 1.6483 12.0811 1.4295 49 1 3.1382 11.1073 1.4286 50 1 4.1959 14.3528 0.0472 51 1 2.1295 6.1931 -1.1495 52 1 3.3803 7.2650 -0.4741 53 1 4.5018 5.3242 0.5644 54 1 4.3336 5.0773 -1.1904 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021578637.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:06 Heat of formation + Delta-G solvation = -37.210208 kcal Electronic energy + Delta-G solvation = -33062.950689 eV Core-core repulsion = 28806.952735 eV Total energy + Delta-G solvation = -4255.997955 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.72863 -40.82212 -39.65874 -38.31047 -36.65605 -36.08258 -34.71637 -32.81149 -32.10271 -31.50676 -30.67541 -29.96356 -28.47492 -27.21948 -25.94825 -25.51014 -24.24607 -24.12755 -22.66591 -22.32390 -20.73771 -20.00111 -19.29027 -18.68969 -17.98927 -17.70235 -17.18211 -17.01286 -16.95999 -16.58810 -16.40787 -16.00368 -15.88372 -15.76539 -15.38691 -15.09901 -14.94215 -14.84354 -14.41292 -14.23148 -14.17102 -13.84733 -13.78796 -13.43909 -13.35604 -13.14338 -13.09100 -12.94739 -12.85672 -12.74985 -12.66266 -12.55676 -12.53548 -12.26967 -12.20038 -12.15193 -11.94219 -11.68491 -11.63246 -11.55188 -10.65235 -10.57030 -10.46582 -9.53568 -9.38088 -9.29260 -8.62777 -8.22343 -6.37113 0.32904 0.48921 1.35220 1.37652 1.49379 1.88527 2.23461 2.31077 2.40637 2.63206 2.86652 2.97140 3.06836 3.71805 3.78785 3.87690 4.00976 4.06723 4.10989 4.11618 4.15366 4.24460 4.25809 4.29544 4.35580 4.42141 4.46714 4.48218 4.52554 4.54362 4.61647 4.73320 4.74815 4.79715 4.86742 4.90964 4.93409 4.96848 4.99317 5.01673 5.04741 5.19462 5.24225 5.28902 5.37324 5.57342 5.58155 5.76425 5.83252 5.88517 5.91501 6.06846 6.09657 6.11233 6.62783 6.71319 6.83707 7.29263 7.55200 8.84656 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.002117 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.642734 B =13223.889890 C =14323.756341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.321 6.321 4 C 0.109 3.891 5 C -0.193 4.193 6 C -0.102 4.102 7 C -0.140 4.140 8 C -0.147 4.147 9 C 0.054 3.946 10 N -0.485 5.485 11 C 0.070 3.930 12 C 0.063 3.937 13 N -0.539 5.539 14 C 0.054 3.946 15 C 0.495 3.505 16 O -0.578 6.578 17 N -0.614 5.614 18 C 0.079 3.921 19 C 0.261 3.739 20 C -0.538 4.538 21 H 0.051 0.949 22 C 0.006 3.994 23 N -0.929 5.929 24 Si 0.967 3.033 25 H -0.267 1.267 26 H -0.269 1.269 27 H -0.282 1.282 28 C 0.061 3.939 29 C 0.068 3.932 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.033 0.967 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.131 0.869 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.023 0.977 49 H -0.004 1.004 50 H 0.267 0.733 51 H 0.038 0.962 52 H 0.069 0.931 53 H 0.041 0.959 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.540 -31.390 0.942 32.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.235 6.235 4 C 0.062 3.938 5 C -0.212 4.212 6 C -0.121 4.121 7 C -0.159 4.159 8 C -0.167 4.167 9 C -0.043 4.043 10 N -0.203 5.203 11 C -0.055 4.055 12 C -0.064 4.064 13 N -0.265 5.265 14 C -0.077 4.077 15 C 0.283 3.717 16 O -0.458 6.458 17 N -0.346 5.346 18 C -0.064 4.064 19 C 0.139 3.861 20 C -0.577 4.577 21 H 0.070 0.930 22 C -0.193 4.193 23 N -0.568 5.568 24 Si 0.792 3.208 25 H -0.192 1.192 26 H -0.194 1.194 27 H -0.208 1.208 28 C -0.067 4.067 29 C -0.059 4.059 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.169 0.831 36 H 0.169 0.831 37 H 0.158 0.842 38 H 0.145 0.855 39 H 0.051 0.949 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.149 0.851 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.110 0.890 48 H 0.041 0.959 49 H 0.014 0.986 50 H 0.076 0.924 51 H 0.056 0.944 52 H 0.087 0.913 53 H 0.059 0.941 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.075 -31.061 1.005 31.873 hybrid contribution 0.708 0.928 -0.857 1.448 sum -6.367 -30.134 0.148 30.799 Atomic orbital electron populations 1.21773 0.91839 1.03903 1.02976 1.23023 0.96662 0.81191 1.02038 1.86160 1.18173 1.30552 1.88588 1.18719 0.83298 0.92350 0.99449 1.21417 0.94379 0.98157 1.07252 1.21242 0.94570 0.97739 0.98518 1.21210 1.00524 0.92165 1.01995 1.21432 0.91933 1.00587 1.02783 1.18497 0.91023 0.89276 1.05468 1.59454 1.25545 1.01312 1.33968 1.22192 0.95973 0.99215 0.88139 1.22251 0.94643 0.87004 1.02521 1.61749 1.27033 1.02538 1.35179 1.21953 0.93739 0.87201 1.04771 1.21187 0.88582 0.85657 0.76251 1.90605 1.16732 1.87269 1.51198 1.48199 1.08494 1.06207 1.71746 1.21926 0.77967 1.03837 1.02625 1.18719 0.90098 0.81341 0.95909 1.21706 1.33681 1.09292 0.92998 0.93038 1.25869 0.95098 0.96368 1.01969 1.70059 1.36586 1.17132 1.33072 0.85373 0.77864 0.78403 0.79189 1.19168 1.19369 1.20791 1.22139 0.96466 0.98251 0.89887 1.22141 0.94988 0.87662 1.01136 0.92418 0.88342 0.91866 0.91464 0.91046 0.83055 0.83112 0.84185 0.85505 0.94874 0.88238 0.87700 0.93235 0.90273 0.85132 0.90968 0.91652 0.89013 0.95942 0.98556 0.92435 0.94409 0.91256 0.94108 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 71.98 0.74 -0.64 16 2 C 0.05 0.54 5.46 71.98 0.39 0.94 16 3 O -0.32 -6.45 8.24 -93.70 -0.77 -7.22 16 4 C 0.11 2.36 6.44 22.59 0.15 2.50 16 5 C -0.19 -3.20 9.04 22.34 0.20 -3.00 16 6 C -0.10 -1.59 10.04 22.29 0.22 -1.37 16 7 C -0.14 -2.60 10.04 22.27 0.22 -2.38 16 8 C -0.15 -3.43 8.84 22.38 0.20 -3.23 16 9 C 0.05 1.36 5.44 38.22 0.21 1.57 16 10 N -0.49 -12.94 4.57 -694.25 -3.18 -16.11 16 11 C 0.07 1.69 5.37 86.31 0.46 2.16 16 12 C 0.06 1.44 5.61 86.31 0.48 1.92 16 13 N -0.54 -16.32 4.44 -900.29 -4.00 -20.32 16 14 C 0.05 1.56 4.00 85.56 0.34 1.91 16 15 C 0.49 20.95 7.37 87.66 0.65 21.60 16 16 O -0.58 -30.51 13.92 -3.03 -0.04 -30.55 16 17 N -0.61 -26.40 2.86 -851.12 -2.43 -28.83 16 18 C 0.08 2.32 10.24 127.77 1.31 3.63 16 19 C 0.26 14.36 5.16 85.63 0.44 14.80 16 20 C -0.54 -31.51 9.39 25.60 0.24 -31.27 16 21 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 22 C 0.01 0.34 5.46 84.66 0.46 0.80 16 23 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 24 Si 0.97 45.66 29.54 68.60 2.03 47.69 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 27 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 28 C 0.06 2.00 5.26 86.31 0.45 2.46 16 29 C 0.07 2.01 4.32 86.31 0.37 2.38 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.68 7.67 -2.39 -0.02 0.67 16 34 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 35 H 0.15 1.65 6.30 -2.91 -0.02 1.63 16 36 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.13 3.05 5.88 -2.91 -0.02 3.03 16 39 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 2.18 6.36 -2.39 -0.02 2.17 16 41 H 0.10 1.88 8.07 -2.38 -0.02 1.86 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 2.00 7.38 -2.38 -0.02 1.98 16 44 H 0.13 2.90 7.99 -2.39 -0.02 2.88 16 45 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 47 H 0.09 2.04 6.44 -2.38 -0.02 2.02 16 48 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 49 H 0.00 -0.24 7.42 -2.39 -0.02 -0.25 16 50 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 51 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.07 2.85 5.85 -2.39 -0.01 2.84 16 53 H 0.04 1.30 7.12 -2.39 -0.02 1.28 16 54 H 0.08 2.37 7.68 -2.39 -0.02 2.35 16 Total: -1.00 -79.17 423.12 0.32 -78.86 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.88 Total: 18.48 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 7.55 Total: 14.77 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -9.32 Total: -122.02 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.81 Total: -37.77 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -79.17 0.32 -78.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021578637.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.646 kcal (2) G-P(sol) polarization free energy of solvation -79.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds