Wall clock time and date at job start Tue Mar 31 2020 05:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00325 * 2 1 4 4 C 1.50698 * 109.47089 * 270.00354 * 3 2 1 5 5 H 1.07996 * 120.00049 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00159 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99806 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00232 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47090 * 59.99860 * 8 6 4 10 10 H 1.48501 * 109.47157 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47219 * 300.00197 * 8 6 4 12 12 C 1.34783 * 119.99893 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99970 * 179.97438 * 12 2 1 14 14 C 1.50694 * 119.99899 * 0.02562 * 12 2 1 15 15 N 1.46501 * 109.47059 * 179.97438 * 14 12 2 16 16 C 1.35438 * 119.47109 * 90.00246 * 15 14 12 17 17 C 1.50695 * 119.38532 * 0.02562 * 16 15 14 18 18 F 1.39896 * 109.47188 * 179.72922 * 17 16 15 19 19 F 1.39908 * 109.46755 * 59.73305 * 17 16 15 20 20 F 1.39894 * 109.47297 * 299.73304 * 17 16 15 21 21 C 1.35756 * 121.22536 * 179.74473 * 16 15 14 22 22 C 1.39471 * 120.13401 * 0.25279 * 21 16 15 23 23 C 1.39331 * 118.96034 * 359.97438 * 22 21 16 24 24 C 1.47086 * 120.58576 * 180.02562 * 23 22 21 25 25 N 1.34777 * 119.99979 * 174.14271 * 24 23 22 26 26 O 1.21647 * 119.99973 * 354.14363 * 24 23 22 27 27 C 1.34659 * 119.47004 * 270.26298 * 15 14 12 28 28 O 1.21890 * 120.10391 * 359.97438 * 27 15 14 29 29 H 1.09006 * 109.46847 * 270.00053 * 1 2 3 30 30 H 1.08998 * 109.46933 * 29.99629 * 1 2 3 31 31 H 1.08998 * 109.47225 * 149.99946 * 1 2 3 32 32 H 1.09008 * 109.47130 * 30.00283 * 3 2 1 33 33 H 1.08998 * 109.47858 * 149.99877 * 3 2 1 34 34 H 0.97000 * 119.99633 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47393 * 59.99758 * 14 12 2 36 36 H 1.08996 * 109.47478 * 299.99779 * 14 12 2 37 37 H 1.08003 * 119.92917 * 180.27536 * 21 16 15 38 38 H 1.08007 * 120.51916 * 180.02562 * 22 21 16 39 39 H 0.97008 * 119.99898 * 5.07702 * 25 24 23 40 40 H 0.97001 * 119.99950 * 185.07209 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5525 3.6185 -0.6731 8 14 3.4379 3.4168 -3.4339 9 1 2.1406 3.5936 -4.1346 10 1 4.1793 4.7035 -3.4339 11 1 4.2412 2.3820 -4.1334 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3854 -2.4723 0.0005 15 7 2.3373 -3.5858 0.0005 16 6 2.7703 -4.0923 1.1797 17 6 2.2634 -3.5004 2.4694 18 9 2.8355 -4.1791 3.5507 19 9 0.8709 -3.6254 2.5243 20 9 2.6128 -2.1472 2.5305 21 6 3.6481 -5.1271 1.2212 22 6 4.1268 -5.6872 0.0370 23 6 3.6894 -5.1682 -1.1798 24 6 4.1707 -5.7320 -2.4502 25 7 3.6524 -5.3019 -3.6177 26 8 5.0366 -6.5864 -2.4472 27 6 2.7719 -4.0859 -1.1718 28 8 2.3741 -3.6139 -2.2228 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6085 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 4.0288 4.4447 -0.8504 35 1 0.7590 -2.5302 -0.8897 36 1 0.7584 -2.5299 0.8902 37 1 3.9761 -5.5176 2.1733 38 1 4.8250 -6.5108 0.0628 39 1 3.0160 -4.5698 -3.6254 40 1 3.9157 -5.7244 -4.4501 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023107575.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:25 Heat of formation + Delta-G solvation = -195.527386 kcal Electronic energy + Delta-G solvation = -34249.595208 eV Core-core repulsion = 29037.376082 eV Total energy + Delta-G solvation = -5212.219127 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.108 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.78211 -48.32021 -48.09522 -42.09058 -39.48590 -38.73856 -37.70022 -35.17456 -34.71271 -33.39587 -32.69647 -31.49382 -29.36825 -27.60606 -27.40040 -25.85940 -23.92911 -23.75414 -22.65542 -21.39161 -19.50216 -19.21865 -19.02508 -18.84756 -18.16553 -17.78901 -17.16203 -16.66528 -16.55981 -16.13792 -15.82532 -15.56190 -15.19944 -15.15016 -14.97524 -14.92927 -14.58569 -14.55549 -14.34401 -14.24293 -14.20580 -13.94537 -13.79206 -13.11894 -12.97154 -12.75216 -12.63066 -12.51836 -12.29278 -12.01302 -11.92561 -11.28342 -10.97141 -10.79078 -10.63395 -10.45221 -10.25219 -10.21921 -9.73399 -9.61640 -9.28035 -8.55999 -8.48390 -7.85092 -6.10121 -4.15172 -0.30671 1.24975 1.60104 2.03201 2.43829 2.93119 3.03375 3.29702 3.34156 3.35882 3.38638 3.43586 3.52094 3.68550 3.81852 4.01133 4.39067 4.40197 4.57353 4.67791 4.72027 4.78960 4.97362 5.17586 5.24161 5.25823 5.46727 5.57597 5.74013 5.75344 6.06074 6.34324 6.79053 6.85900 7.29200 7.29379 7.36930 7.63315 7.85112 8.13264 8.15460 8.28283 8.68329 8.90140 9.50080 10.98043 Molecular weight = 361.11amu Principal moments of inertia in cm(-1) A = 0.009285 B = 0.004152 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.981341 B = 6742.930251 C = 8775.134257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.591 5.591 3 C 0.248 3.752 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.497 3.503 13 O -0.522 6.522 14 C 0.040 3.960 15 N -0.448 5.448 16 C 0.106 3.894 17 C 0.506 3.494 18 F -0.155 7.155 19 F -0.166 7.166 20 F -0.147 7.147 21 C -0.174 4.174 22 C 0.056 3.944 23 C -0.244 4.244 24 C 0.586 3.414 25 N -0.840 5.840 26 O -0.554 6.554 27 C 0.544 3.456 28 O -0.524 6.524 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.265 0.735 35 H 0.139 0.861 36 H 0.122 0.878 37 H 0.172 0.828 38 H 0.165 0.835 39 H 0.417 0.583 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 -18.901 6.872 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.324 5.324 3 C 0.129 3.871 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.280 3.720 13 O -0.398 6.398 14 C -0.085 4.085 15 N -0.156 5.156 16 C -0.007 4.007 17 C 0.451 3.549 18 F -0.136 7.136 19 F -0.147 7.147 20 F -0.128 7.128 21 C -0.199 4.199 22 C 0.033 3.967 23 C -0.251 4.251 24 C 0.371 3.629 25 N -0.412 5.412 26 O -0.434 6.434 27 C 0.346 3.654 28 O -0.404 6.404 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.157 0.843 36 H 0.140 0.860 37 H 0.190 0.810 38 H 0.183 0.817 39 H 0.258 0.742 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -6.497 -18.763 6.420 20.868 hybrid contribution -0.197 0.849 -1.028 1.348 sum -6.694 -17.914 5.392 19.869 Atomic orbital electron populations 1.21764 0.81074 1.03118 1.00843 1.48093 1.06356 1.07356 1.70546 1.19362 0.92556 0.77385 0.97785 1.21363 1.36977 1.06404 0.92102 0.92411 1.24921 0.95183 0.96305 0.97532 1.69920 1.38190 1.14325 1.30839 0.86544 0.78444 0.77840 0.84542 1.20172 1.21107 1.20140 1.19950 0.88341 0.84688 0.79016 1.90738 1.13069 1.86433 1.49545 1.22564 0.92064 0.85632 1.08220 1.44684 1.37158 1.28529 1.05194 1.20552 0.98144 0.96148 0.85883 1.18019 0.75778 0.77445 0.83653 1.93235 1.84355 1.79702 1.56351 1.93213 1.29424 1.95629 1.96414 1.93427 1.91480 1.31513 1.96395 1.20658 0.99947 0.97769 1.01492 1.21980 0.90832 0.94419 0.89429 1.21185 1.06088 1.01768 0.96074 1.17269 0.80951 0.81146 0.83568 1.44363 1.48780 1.40196 1.07843 1.90822 1.31359 1.33523 1.87684 1.16833 0.82415 0.83811 0.82379 1.90648 1.59246 1.62227 1.28278 0.93156 0.89951 0.92538 0.94580 0.93689 0.92578 0.84344 0.85988 0.81040 0.81738 0.74231 0.77102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 10.24 59.85 0.61 1.70 16 2 N -0.59 -11.91 2.86 -182.96 -0.52 -12.43 16 3 C 0.25 6.30 5.16 -5.20 -0.03 6.27 16 4 C -0.53 -14.86 9.39 -34.44 -0.32 -15.19 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 7 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.50 9.80 6.24 -10.99 -0.07 9.73 16 13 O -0.52 -12.60 15.62 5.56 0.09 -12.51 16 14 C 0.04 0.56 3.69 -5.20 -0.02 0.54 16 15 N -0.45 -6.23 2.07 -116.02 -0.24 -6.47 16 16 C 0.11 1.21 6.14 -81.89 -0.50 0.71 16 17 C 0.51 5.43 2.79 36.00 0.10 5.53 16 18 F -0.16 -1.39 15.88 2.25 0.04 -1.35 16 19 F -0.17 -1.55 15.16 2.25 0.03 -1.52 16 20 F -0.15 -2.09 14.66 2.25 0.03 -2.06 16 21 C -0.17 -1.56 9.36 -40.01 -0.37 -1.93 16 22 C 0.06 0.57 9.69 -38.72 -0.38 0.19 16 23 C -0.24 -3.29 5.92 -104.51 -0.62 -3.91 16 24 C 0.59 8.51 8.01 -12.67 -0.10 8.41 16 25 N -0.84 -10.70 8.79 30.36 0.27 -10.44 16 26 O -0.55 -9.08 17.24 5.24 0.09 -8.98 16 27 C 0.54 8.27 7.43 -14.92 -0.11 8.16 16 28 O -0.52 -8.91 13.27 5.02 0.07 -8.84 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 31 H 0.06 0.63 6.44 -51.93 -0.33 0.30 16 32 H 0.04 0.92 8.07 -51.92 -0.42 0.50 16 33 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.14 1.78 6.65 -51.93 -0.35 1.43 16 36 H 0.12 1.34 5.11 -51.93 -0.27 1.08 16 37 H 0.17 0.94 7.04 -52.48 -0.37 0.57 16 38 H 0.17 1.30 7.71 -52.48 -0.40 0.90 16 39 H 0.42 5.64 5.44 -40.82 -0.22 5.42 16 40 H 0.40 4.12 8.93 -40.82 -0.36 3.76 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -36.40 354.34 -4.50 -40.89 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -3.50 Total: 5.12 kcal Atomic # 6 Polarization: 23.81 SS G_CDS: -1.91 Total: 21.91 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.24 Total: -54.90 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: 0.24 Total: -30.34 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.10 Total: -4.93 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.40 -4.50 -40.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023107575.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.633 kcal (2) G-P(sol) polarization free energy of solvation -36.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds