Wall clock time and date at job start Tue Mar 31 2020 05:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00325 * 2 1 4 4 C 1.50698 * 109.47089 * 270.00354 * 3 2 1 5 5 H 1.07996 * 120.00049 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00159 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99806 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00232 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47090 * 59.99860 * 8 6 4 10 10 H 1.48501 * 109.47157 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47219 * 300.00197 * 8 6 4 12 12 C 1.34783 * 119.99893 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99970 * 179.97438 * 12 2 1 14 14 C 1.50694 * 119.99899 * 0.02562 * 12 2 1 15 15 N 1.46501 * 109.47059 * 179.97438 * 14 12 2 16 16 C 1.35438 * 119.47109 * 90.00246 * 15 14 12 17 17 C 1.50695 * 119.38532 * 0.02562 * 16 15 14 18 18 F 1.39896 * 109.47188 * 179.72922 * 17 16 15 19 19 F 1.39908 * 109.46755 * 59.73305 * 17 16 15 20 20 F 1.39894 * 109.47297 * 299.73304 * 17 16 15 21 21 C 1.35756 * 121.22536 * 179.74473 * 16 15 14 22 22 C 1.39471 * 120.13401 * 0.25279 * 21 16 15 23 23 C 1.39331 * 118.96034 * 359.97438 * 22 21 16 24 24 C 1.47086 * 120.58576 * 180.02562 * 23 22 21 25 25 N 1.34777 * 119.99979 * 174.14271 * 24 23 22 26 26 O 1.21647 * 119.99973 * 354.14363 * 24 23 22 27 27 C 1.34659 * 119.47004 * 270.26298 * 15 14 12 28 28 O 1.21890 * 120.10391 * 359.97438 * 27 15 14 29 29 H 1.09006 * 109.46847 * 270.00053 * 1 2 3 30 30 H 1.08998 * 109.46933 * 29.99629 * 1 2 3 31 31 H 1.08998 * 109.47225 * 149.99946 * 1 2 3 32 32 H 1.09008 * 109.47130 * 30.00283 * 3 2 1 33 33 H 1.08998 * 109.47858 * 149.99877 * 3 2 1 34 34 H 0.97000 * 119.99633 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47393 * 59.99758 * 14 12 2 36 36 H 1.08996 * 109.47478 * 299.99779 * 14 12 2 37 37 H 1.08003 * 119.92917 * 180.27536 * 21 16 15 38 38 H 1.08007 * 120.51916 * 180.02562 * 22 21 16 39 39 H 0.97008 * 119.99898 * 5.07702 * 25 24 23 40 40 H 0.97001 * 119.99950 * 185.07209 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5525 3.6185 -0.6731 8 14 3.4379 3.4168 -3.4339 9 1 2.1406 3.5936 -4.1346 10 1 4.1793 4.7035 -3.4339 11 1 4.2412 2.3820 -4.1334 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3854 -2.4723 0.0005 15 7 2.3373 -3.5858 0.0005 16 6 2.7703 -4.0923 1.1797 17 6 2.2634 -3.5004 2.4694 18 9 2.8355 -4.1791 3.5507 19 9 0.8709 -3.6254 2.5243 20 9 2.6128 -2.1472 2.5305 21 6 3.6481 -5.1271 1.2212 22 6 4.1268 -5.6872 0.0370 23 6 3.6894 -5.1682 -1.1798 24 6 4.1707 -5.7320 -2.4502 25 7 3.6524 -5.3019 -3.6177 26 8 5.0366 -6.5864 -2.4472 27 6 2.7719 -4.0859 -1.1718 28 8 2.3741 -3.6139 -2.2228 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6085 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 4.0288 4.4447 -0.8504 35 1 0.7590 -2.5302 -0.8897 36 1 0.7584 -2.5299 0.8902 37 1 3.9761 -5.5176 2.1733 38 1 4.8250 -6.5108 0.0628 39 1 3.0160 -4.5698 -3.6254 40 1 3.9157 -5.7244 -4.4501 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023107575.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:24 Heat of formation + Delta-G solvation = -223.289198 kcal Electronic energy + Delta-G solvation = -34250.799051 eV Core-core repulsion = 29037.376082 eV Total energy + Delta-G solvation = -5213.422969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.108 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.62147 -49.08708 -49.01805 -43.12345 -40.79814 -40.05107 -38.75385 -36.75947 -35.84326 -34.76965 -34.45996 -32.45582 -30.87002 -29.05935 -28.41141 -27.34604 -25.27809 -24.83323 -24.08428 -22.49086 -20.71037 -20.22837 -19.89283 -19.84016 -19.22821 -18.81233 -18.69509 -18.46374 -17.72140 -17.38822 -16.90377 -16.76017 -16.71150 -16.42680 -16.07174 -15.91715 -15.77329 -15.53140 -15.38658 -15.37176 -15.13842 -15.07687 -14.70094 -14.47824 -14.47489 -13.93476 -13.72227 -13.58519 -13.56182 -13.50194 -13.22577 -13.18867 -12.82974 -12.59116 -12.24025 -11.81418 -11.76378 -11.56077 -11.36565 -10.81069 -10.67914 -10.67321 -9.59964 -9.53164 -8.26430 -6.40405 -1.22993 0.34511 0.67343 1.09016 1.33295 1.37019 1.37720 1.44338 1.56874 2.06772 2.17845 2.34722 2.42354 2.55269 2.62100 2.93284 3.03806 3.05587 3.38442 3.54062 3.57727 3.80235 3.84142 3.91794 4.23485 4.35595 4.38415 4.66243 4.72802 4.90346 4.94351 4.97564 5.17831 5.34939 5.48126 5.74784 5.81468 6.01147 6.21787 6.53152 6.58066 6.68564 7.15774 7.24093 7.32531 8.80465 Molecular weight = 361.11amu Principal moments of inertia in cm(-1) A = 0.009285 B = 0.004152 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.981341 B = 6742.930251 C = 8775.134257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.600 5.600 3 C 0.263 3.737 4 C -0.544 4.544 5 H 0.050 0.950 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.962 3.038 9 H -0.259 1.259 10 H -0.276 1.276 11 H -0.283 1.283 12 C 0.489 3.511 13 O -0.576 6.576 14 C 0.054 3.946 15 N -0.456 5.456 16 C 0.085 3.915 17 C 0.513 3.487 18 F -0.141 7.141 19 F -0.155 7.155 20 F -0.171 7.171 21 C -0.149 4.149 22 C 0.081 3.919 23 C -0.273 4.273 24 C 0.581 3.419 25 N -0.834 5.834 26 O -0.579 6.579 27 C 0.534 3.466 28 O -0.556 6.556 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.031 0.969 33 H 0.000 1.000 34 H 0.268 0.732 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.215 0.785 38 H 0.193 0.807 39 H 0.415 0.585 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.482 -20.609 7.506 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.331 5.331 3 C 0.142 3.858 4 C -0.583 4.583 5 H 0.068 0.932 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.183 1.183 10 H -0.201 1.201 11 H -0.209 1.209 12 C 0.275 3.725 13 O -0.456 6.456 14 C -0.070 4.070 15 N -0.163 5.163 16 C -0.026 4.026 17 C 0.458 3.542 18 F -0.122 7.122 19 F -0.136 7.136 20 F -0.153 7.153 21 C -0.172 4.172 22 C 0.058 3.942 23 C -0.280 4.280 24 C 0.367 3.633 25 N -0.405 5.405 26 O -0.462 6.462 27 C 0.337 3.663 28 O -0.439 6.439 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.049 0.951 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.231 0.769 38 H 0.210 0.790 39 H 0.255 0.745 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -7.634 -20.494 7.073 22.985 hybrid contribution 0.153 1.314 -1.117 1.731 sum -7.481 -19.180 5.956 21.432 Atomic orbital electron populations 1.22109 0.77401 1.04544 1.03361 1.48074 1.08645 1.05960 1.70469 1.18779 0.91212 0.79857 0.95925 1.21638 1.37096 1.06517 0.93045 0.93213 1.25775 0.94872 0.96428 1.01669 1.70027 1.38784 1.14750 1.32877 0.85553 0.78901 0.77328 0.79552 1.18343 1.20094 1.20902 1.20851 0.88077 0.86211 0.77352 1.90696 1.15683 1.87510 1.51742 1.22474 0.91528 0.82554 1.10459 1.44628 1.37543 1.28403 1.05739 1.20937 0.99207 0.97050 0.85388 1.17878 0.76234 0.76376 0.83724 1.93264 1.84195 1.79172 1.55564 1.93229 1.28569 1.95457 1.96359 1.93391 1.91791 1.33564 1.96510 1.21210 0.97372 0.95879 1.02755 1.22391 0.89469 0.93843 0.88465 1.21167 1.07424 1.02548 0.96891 1.17496 0.80670 0.80873 0.84286 1.44339 1.48230 1.39812 1.08146 1.90798 1.32520 1.34763 1.88096 1.17110 0.82597 0.84179 0.82401 1.90613 1.60538 1.63430 1.29315 0.90018 0.90805 0.88907 0.95124 0.98190 0.92332 0.82934 0.82651 0.76871 0.79027 0.74458 0.76050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.82 10.24 127.77 1.31 3.13 16 2 N -0.60 -24.34 2.86 -851.14 -2.43 -26.77 16 3 C 0.26 13.91 5.16 85.63 0.44 14.35 16 4 C -0.54 -31.35 9.39 25.60 0.24 -31.11 16 5 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 6 C 0.01 0.69 5.46 84.65 0.46 1.16 16 7 N -0.92 -55.65 13.29 21.45 0.28 -55.36 16 8 Si 0.96 45.41 29.54 68.60 2.03 47.44 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 12 C 0.49 19.41 6.24 87.65 0.55 19.96 16 13 O -0.58 -28.80 15.62 -3.03 -0.05 -28.85 16 14 C 0.05 1.44 3.69 85.63 0.32 1.76 16 15 N -0.46 -12.07 2.07 -639.17 -1.32 -13.39 16 16 C 0.09 1.76 6.14 41.43 0.25 2.01 16 17 C 0.51 9.74 2.79 71.23 0.20 9.94 16 18 F -0.14 -2.06 15.88 44.97 0.71 -1.34 16 19 F -0.16 -2.44 15.16 44.97 0.68 -1.76 16 20 F -0.17 -4.72 14.66 44.97 0.66 -4.07 16 21 C -0.15 -2.14 9.36 21.99 0.21 -1.93 16 22 C 0.08 1.42 9.69 22.83 0.22 1.64 16 23 C -0.27 -7.10 5.92 -19.79 -0.12 -7.21 16 24 C 0.58 16.68 8.01 86.56 0.69 17.37 16 25 N -0.83 -21.37 8.79 -176.11 -1.55 -22.92 16 26 O -0.58 -18.61 17.24 -4.18 -0.07 -18.68 16 27 C 0.53 15.98 7.43 85.16 0.63 16.62 16 28 O -0.56 -19.08 13.27 -4.96 -0.07 -19.14 16 29 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 31 H 0.09 1.82 6.44 -2.39 -0.02 1.80 16 32 H 0.03 1.62 8.07 -2.38 -0.02 1.60 16 33 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.15 3.64 6.65 -2.39 -0.02 3.62 16 36 H 0.16 3.00 5.11 -2.39 -0.01 2.99 16 37 H 0.21 1.23 7.04 -2.91 -0.02 1.21 16 38 H 0.19 2.32 7.71 -2.91 -0.02 2.30 16 39 H 0.42 11.43 5.44 -92.75 -0.50 10.92 16 40 H 0.41 8.46 8.93 -92.71 -0.83 7.63 16 Total: -1.00 -83.65 354.34 4.12 -79.53 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -0.17 Total: 17.65 kcal Atomic # 6 Polarization: 42.27 SS G_CDS: 5.41 Total: 47.67 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -5.01 Total: -118.44 kcal Atomic # 8 Polarization: -66.49 SS G_CDS: -0.19 Total: -66.68 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 2.05 Total: -7.16 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -83.65 4.12 -79.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023107575.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.762 kcal (2) G-P(sol) polarization free energy of solvation -83.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds