Wall clock time and date at job start Tue Mar 31 2020 05:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38280 * 119.96182 * 2 1 4 4 C 1.38243 * 120.11931 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.04280 * 359.97438 * 4 3 2 6 6 Cl 1.73602 * 120.03513 * 179.97438 * 5 4 3 7 7 C 1.38810 * 119.92583 * 0.02562 * 5 4 3 8 8 O 1.35920 * 120.06090 * 179.97438 * 7 5 4 9 9 C 1.42903 * 117.00028 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.47128 * 180.02562 * 9 8 7 11 11 O 1.21293 * 120.00078 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00052 * 179.97438 * 10 9 8 13 13 C 1.39990 * 120.00220 * 175.49145 * 12 10 9 14 14 C 1.38916 * 120.00443 * 214.85522 * 13 12 10 15 15 C 1.38001 * 120.00179 * 179.76460 * 14 13 12 16 16 C 1.38914 * 119.99829 * 0.48226 * 15 14 13 17 17 O 1.35776 * 119.99993 * 179.74683 * 16 15 14 18 18 C 1.34809 * 117.00189 * 185.37092 * 17 16 15 19 19 H 1.07995 * 119.99813 * 354.95820 * 18 17 16 20 20 C 1.38635 * 120.00144 * 174.96344 * 18 17 16 21 21 N 1.31579 * 119.99754 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00110 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47228 * 89.99901 * 22 20 18 24 24 H 1.48498 * 109.46929 * 209.99931 * 22 20 18 25 25 H 1.48500 * 109.47051 * 329.99804 * 22 20 18 26 26 C 1.38907 * 120.00136 * 359.77263 * 16 15 14 27 27 C 1.38001 * 120.00565 * 359.97438 * 26 16 15 28 28 C 1.38158 * 119.96420 * 180.25952 * 2 1 3 29 29 H 1.08996 * 109.47203 * 89.99998 * 1 2 3 30 30 H 1.09001 * 109.46729 * 209.99800 * 1 2 3 31 31 H 1.08999 * 109.47174 * 329.99705 * 1 2 3 32 32 H 1.08001 * 119.93802 * 359.95632 * 3 2 1 33 33 H 1.07999 * 119.97713 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.46942 * 300.00194 * 9 8 7 35 35 H 1.08997 * 109.46954 * 60.00519 * 9 8 7 36 36 H 0.96998 * 120.00008 * 355.49465 * 12 10 9 37 37 H 1.08007 * 119.99927 * 359.97438 * 14 13 12 38 38 H 1.07999 * 120.00367 * 180.20754 * 15 14 13 39 39 H 0.97003 * 119.99496 * 179.97438 * 21 20 18 40 40 H 1.08002 * 119.99558 * 179.97438 * 26 16 15 41 41 H 1.07996 * 120.00293 * 179.97438 * 27 26 16 42 42 H 1.08005 * 120.01729 * 0.03879 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5800 1.2018 0.0005 5 6 4.2755 0.0069 0.0016 6 17 6.0115 0.0119 0.0016 7 6 3.5841 -1.1968 0.0016 8 8 4.2650 -2.3731 0.0021 9 6 3.4881 -3.5725 0.0027 10 6 4.4074 -4.7666 0.0038 11 8 5.6097 -4.6063 0.0046 12 7 3.8937 -6.0126 0.0050 13 6 4.7443 -7.1205 -0.0892 14 6 4.3356 -8.2531 -0.7820 15 6 5.1760 -9.3434 -0.8790 16 6 6.4267 -9.3121 -0.2753 17 8 7.2515 -10.3867 -0.3663 18 6 8.4027 -10.3357 0.3334 19 1 8.6717 -9.4353 0.8656 20 6 9.2414 -11.4390 0.3695 21 7 8.9135 -12.5361 -0.2787 22 14 10.8369 -11.3681 1.3384 23 1 10.5908 -11.8205 2.7312 24 1 11.8432 -12.2545 0.7005 25 1 11.3452 -9.9728 1.3537 26 6 6.8333 -8.1816 0.4220 27 6 5.9951 -7.0892 0.5146 28 6 2.1970 -1.1969 -0.0054 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6559 2.1324 -0.0007 33 1 4.1170 2.1388 0.0001 34 1 2.8592 -3.5976 0.8927 35 1 2.8594 -3.5985 -0.8873 36 1 2.9347 -6.1417 0.0711 37 1 3.3614 -8.2791 -1.2476 38 1 4.8596 -10.2226 -1.4204 39 1 9.5006 -13.3080 -0.2536 40 1 7.8056 -8.1575 0.8917 41 1 6.3111 -6.2105 1.0571 42 1 1.6567 -2.1321 -0.0103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023149689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:21 Heat of formation + Delta-G solvation = -68.955415 kcal Electronic energy + Delta-G solvation = -27628.734804 eV Core-core repulsion = 23372.277404 eV Total energy + Delta-G solvation = -4256.457400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.091 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78786 -41.12704 -40.30367 -38.77333 -37.99901 -37.41970 -35.48760 -34.20271 -33.42874 -31.90295 -31.49349 -30.51779 -28.77159 -27.58706 -27.14371 -24.22959 -23.77324 -22.90468 -22.61080 -21.44209 -20.00662 -19.27171 -19.14238 -18.35153 -17.83335 -17.50853 -17.28423 -16.95841 -16.37274 -16.21315 -15.68578 -15.49730 -15.43807 -15.25661 -15.14986 -14.67497 -14.63736 -14.53109 -14.16285 -13.86851 -13.73936 -13.58665 -13.31531 -13.23668 -13.22637 -12.72670 -12.50986 -12.48229 -12.42904 -12.21097 -12.15191 -11.82519 -11.78817 -11.44751 -11.18737 -10.85100 -10.55245 -9.85847 -9.79306 -9.17994 -8.65583 -8.48895 -6.15511 0.10834 0.30171 0.47570 0.52843 1.20670 1.33491 1.39587 1.43050 1.50248 1.56435 2.16331 2.54845 2.58040 2.79674 3.12708 3.45980 3.50823 3.75727 3.82013 3.97121 4.07114 4.09375 4.10854 4.13413 4.26574 4.42051 4.46319 4.64185 4.66971 4.71045 4.78712 4.91044 5.05225 5.05561 5.10328 5.19120 5.27947 5.32196 5.41469 5.53845 5.55522 5.68358 5.70104 6.00451 6.11294 6.18868 6.48232 6.95838 7.15554 7.74640 8.73607 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.001765 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.883173 B =15861.701648 C =17251.077992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.041 4.041 3 C -0.147 4.147 4 C -0.073 4.073 5 C -0.103 4.103 6 Cl -0.081 7.081 7 C 0.124 3.876 8 O -0.312 6.312 9 C 0.047 3.953 10 C 0.503 3.497 11 O -0.556 6.556 12 N -0.638 5.638 13 C 0.061 3.939 14 C -0.071 4.071 15 C -0.180 4.180 16 C 0.107 3.893 17 O -0.226 6.226 18 C -0.414 4.414 19 H 0.095 0.905 20 C -0.019 4.019 21 N -0.916 5.916 22 Si 1.015 2.985 23 H -0.261 1.261 24 H -0.268 1.268 25 H -0.260 1.260 26 C -0.232 4.232 27 C -0.078 4.078 28 C -0.201 4.201 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.432 0.568 37 H 0.174 0.826 38 H 0.131 0.869 39 H 0.274 0.726 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.547 28.008 1.342 36.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.041 4.041 3 C -0.165 4.165 4 C -0.092 4.092 5 C -0.130 4.130 6 Cl -0.052 7.052 7 C 0.078 3.922 8 O -0.225 6.225 9 C -0.030 4.030 10 C 0.291 3.709 11 O -0.433 6.433 12 N -0.287 5.287 13 C -0.032 4.032 14 C -0.091 4.091 15 C -0.200 4.200 16 C 0.057 3.943 17 O -0.132 6.132 18 C -0.490 4.490 19 H 0.113 0.887 20 C -0.217 4.217 21 N -0.554 5.554 22 Si 0.835 3.165 23 H -0.186 1.186 24 H -0.192 1.192 25 H -0.184 1.184 26 C -0.252 4.252 27 C -0.098 4.098 28 C -0.219 4.219 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.177 0.823 33 H 0.169 0.831 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.272 0.728 37 H 0.191 0.809 38 H 0.149 0.851 39 H 0.083 0.917 40 H 0.131 0.869 41 H 0.140 0.860 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -22.305 27.721 1.168 35.599 hybrid contribution 1.206 -0.486 0.400 1.360 sum -21.099 27.235 1.567 34.487 Atomic orbital electron populations 1.20926 0.88087 1.04478 1.03789 1.20233 0.98078 0.91834 0.93969 1.21302 0.92555 0.99495 1.03166 1.21161 0.95054 0.95800 0.97148 1.20566 0.84699 0.93628 1.14100 1.98380 1.10648 1.98925 1.97268 1.18933 0.91490 0.84380 0.97419 1.86210 1.35508 1.12213 1.88594 1.22668 0.92437 0.80346 1.07575 1.20874 0.89170 0.84853 0.76015 1.90787 1.17855 1.86004 1.48663 1.42812 1.10913 1.02494 1.72510 1.17322 0.92770 0.89271 1.03881 1.20809 1.00644 0.90628 0.96989 1.20366 0.91970 1.01366 1.06272 1.19974 0.91589 0.87629 0.95140 1.83930 1.29719 1.36609 1.62982 1.21740 0.95866 1.01580 1.29836 0.88729 1.26505 1.03152 0.93617 0.98454 1.70174 1.39310 1.03924 1.41951 0.84637 0.74991 0.79142 0.77773 1.18593 1.19220 1.18375 1.21089 1.01961 0.94700 1.07440 1.20932 0.94109 0.96721 0.98038 1.21434 0.90480 1.01355 1.08669 0.89561 0.90021 0.89915 0.82305 0.83080 0.84823 0.84823 0.72812 0.80906 0.85094 0.91744 0.86877 0.86042 0.81625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.31 10.01 71.23 0.71 0.41 16 2 C -0.04 -0.36 5.88 -19.87 -0.12 -0.48 16 3 C -0.15 -1.42 9.70 22.28 0.22 -1.21 16 4 C -0.07 -1.04 9.83 22.28 0.22 -0.82 16 5 C -0.10 -2.11 6.33 22.41 0.14 -1.97 16 6 Cl -0.08 -2.03 28.50 -2.72 -0.08 -2.11 16 7 C 0.12 2.37 6.68 22.52 0.15 2.52 16 8 O -0.31 -7.32 9.13 -73.62 -0.67 -7.99 16 9 C 0.05 0.68 5.22 71.24 0.37 1.05 16 10 C 0.50 12.50 7.75 87.66 0.68 13.18 16 11 O -0.56 -21.03 13.94 15.96 0.22 -20.80 16 12 N -0.64 -13.40 5.34 -303.37 -1.62 -15.02 16 13 C 0.06 1.94 6.30 38.17 0.24 2.19 16 14 C -0.07 -2.14 9.96 22.38 0.22 -1.92 16 15 C -0.18 -7.26 9.99 22.38 0.22 -7.04 16 16 C 0.11 5.43 6.65 22.59 0.15 5.58 16 17 O -0.23 -13.75 9.75 -22.82 -0.22 -13.97 16 18 C -0.41 -24.85 9.48 67.91 0.64 -24.20 16 19 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 20 C -0.02 -1.12 5.49 84.83 0.47 -0.66 16 21 N -0.92 -56.53 13.67 21.61 0.30 -56.23 16 22 Si 1.02 44.36 29.55 68.60 2.03 46.39 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 26 C -0.23 -11.05 9.16 22.37 0.20 -10.84 16 27 C -0.08 -3.17 8.69 22.38 0.19 -2.97 16 28 C -0.20 -2.26 8.69 22.36 0.19 -2.06 16 29 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.08 0.07 8.09 -2.39 -0.02 0.05 16 31 H 0.08 0.07 8.08 -2.39 -0.02 0.05 16 32 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 33 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.13 0.88 7.68 -2.39 -0.02 0.86 16 35 H 0.13 0.91 7.65 -2.39 -0.02 0.89 16 36 H 0.43 4.25 8.82 -92.71 -0.82 3.43 16 37 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16 38 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.11 5.64 5.63 -2.91 -0.02 5.62 16 41 H 0.12 5.04 6.22 -2.91 -0.02 5.03 16 42 H 0.17 0.73 6.30 -2.91 -0.02 0.71 16 Total: -1.00 -87.55 379.36 5.15 -82.41 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.28 Total: 16.57 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 4.92 Total: -29.25 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -1.32 Total: -71.25 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.67 Total: -42.76 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.08 Total: -2.11 kcal Total: -87.55 5.15 -82.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023149689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.453 kcal (2) G-P(sol) polarization free energy of solvation -87.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds