Wall clock time and date at job start Tue Mar 31 2020 04:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42087 * 110.54348 * 2 1 4 4 O 1.42108 * 110.54003 * 223.24851 * 2 1 3 5 5 C 1.76202 * 104.44660 * 111.62896 * 2 1 3 6 6 C 1.38361 * 119.85558 * 90.00232 * 5 2 1 7 7 C 1.37950 * 120.14788 * 180.02562 * 6 5 2 8 8 C 1.39596 * 119.85270 * 359.97438 * 7 6 5 9 9 C 1.47807 * 120.14833 * 180.02562 * 8 7 6 10 10 O 1.21568 * 119.99839 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00225 * 179.97438 * 9 8 7 12 12 C 1.39912 * 120.00108 * 184.25442 * 11 9 8 13 13 C 1.38935 * 120.00368 * 324.63108 * 12 11 9 14 14 C 1.37998 * 119.99405 * 179.76518 * 13 12 11 15 15 C 1.38904 * 120.00426 * 0.50993 * 14 13 12 16 16 O 1.35775 * 119.99860 * 179.72027 * 15 14 13 17 17 C 1.34810 * 117.00267 * 185.37108 * 16 15 14 18 18 H 1.07998 * 120.00043 * 354.96658 * 17 16 15 19 19 C 1.38629 * 120.00155 * 174.96168 * 17 16 15 20 20 N 1.31578 * 120.00405 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00184 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47373 * 89.99472 * 21 19 17 23 23 H 1.48497 * 109.47530 * 209.99592 * 21 19 17 24 24 H 1.48498 * 109.46899 * 329.99892 * 21 19 17 25 25 C 1.38913 * 120.00838 * 359.74436 * 15 14 13 26 26 C 1.38002 * 120.00181 * 359.97438 * 25 15 14 27 27 C 1.39593 * 119.70628 * 0.27373 * 8 7 6 28 28 C 1.37962 * 119.84844 * 359.44868 * 27 8 7 29 29 H 1.09003 * 109.46805 * 308.37394 * 1 2 3 30 30 H 1.08994 * 109.47022 * 68.37222 * 1 2 3 31 31 H 1.09003 * 109.47166 * 188.37650 * 1 2 3 32 32 H 1.08004 * 119.92492 * 359.97438 * 6 5 2 33 33 H 1.08002 * 120.07820 * 179.97438 * 7 6 5 34 34 H 0.96998 * 119.99915 * 4.53475 * 11 9 8 35 35 H 1.07998 * 120.00117 * 0.02562 * 13 12 11 36 36 H 1.07998 * 119.99802 * 180.25450 * 14 13 12 37 37 H 0.96999 * 120.00226 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.00005 * 179.97438 * 25 15 14 39 39 H 1.07994 * 119.99892 * 179.97438 * 26 25 15 40 40 H 1.07997 * 120.07693 * 179.69998 * 27 8 7 41 41 H 1.07999 * 119.92194 * 180.27467 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3305 0.0000 4 8 2.3126 -0.9693 -0.9118 5 6 2.2536 -0.6289 1.5862 6 6 2.4255 -1.9903 1.7639 7 6 2.7691 -2.4893 3.0032 8 6 2.9440 -1.6173 4.0793 9 6 3.3127 -2.1448 5.4099 10 8 3.4649 -3.3404 5.5689 11 7 3.4813 -1.3003 6.4466 12 6 3.9167 -1.7888 7.6832 13 6 3.5060 -3.0427 8.1185 14 6 3.9394 -3.5264 9.3361 15 6 4.7777 -2.7553 10.1312 16 8 5.1995 -3.2290 11.3317 17 6 5.9188 -2.3890 12.1027 18 1 6.2045 -1.4190 11.7235 19 6 6.2917 -2.7702 13.3823 20 7 6.9942 -1.9506 14.1346 21 14 5.7980 -4.4482 14.0381 22 1 6.8515 -5.4400 13.7037 23 1 5.6367 -4.3756 15.5125 24 1 4.5134 -4.8631 13.4194 25 6 5.1841 -1.4994 9.6986 26 6 4.7555 -1.0178 8.4784 27 6 2.7639 -0.2455 3.8943 28 6 2.4259 0.2409 2.6483 29 1 -0.3633 0.6380 0.8057 30 1 -0.3633 0.3788 -0.9553 31 1 -0.3634 -1.0167 0.1497 32 1 2.2895 -2.6638 0.9306 33 1 2.9026 -3.5521 3.1408 34 1 3.2969 -0.3544 6.3365 35 1 2.8510 -3.6405 7.5021 36 1 3.6236 -4.5028 9.6726 37 1 7.2554 -2.2175 15.0298 38 1 5.8355 -0.8999 10.3171 39 1 5.0712 -0.0413 8.1423 40 1 2.8929 0.4340 4.7238 41 1 2.2907 1.3024 2.5028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023150253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:22 Heat of formation + Delta-G solvation = -60.100325 kcal Electronic energy + Delta-G solvation = -27718.598912 eV Core-core repulsion = 23464.569204 eV Total energy + Delta-G solvation = -4254.029708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.086 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81315 -39.40374 -38.60331 -37.62737 -36.71864 -36.45341 -34.36292 -32.45595 -32.04003 -31.59610 -30.39703 -30.10080 -28.28769 -25.55902 -24.64471 -23.33647 -22.48034 -21.69608 -20.46866 -19.59491 -18.80732 -18.07405 -17.74930 -17.44878 -16.84106 -16.72702 -16.26301 -15.65637 -15.28649 -15.13999 -14.89874 -14.71201 -14.16166 -14.04556 -13.99584 -13.84144 -13.79685 -13.75896 -13.40439 -13.22888 -12.88092 -12.59432 -12.49957 -12.40342 -12.33677 -11.93113 -11.84329 -11.72108 -11.67147 -11.28545 -10.98941 -10.89640 -10.23164 -10.07424 -9.90235 -9.73670 -9.62587 -9.41616 -8.84395 -8.38517 -7.17009 -6.47287 -4.13306 -0.54616 -0.06755 0.74231 1.88131 2.02831 2.27598 2.45226 2.94194 3.18831 3.21882 3.23706 3.37501 3.43259 3.55186 4.10229 4.17961 4.19540 4.23490 4.32873 4.37691 4.45729 4.69131 4.80404 4.86791 5.02314 5.04193 5.05179 5.34157 5.39674 5.46278 5.49612 5.62441 5.71527 5.92476 6.01088 6.08791 6.19469 6.56423 6.65879 6.80663 6.95894 7.14143 7.43516 7.48719 7.71222 7.94700 8.06113 8.87574 9.48988 10.59920 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.036701 B = 0.001579 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.738421 B =17732.210723 C =18199.611608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.500 3.500 3 O -0.935 6.935 4 O -0.935 6.935 5 C -0.645 4.645 6 C -0.030 4.030 7 C -0.082 4.082 8 C -0.071 4.071 9 C 0.543 3.457 10 O -0.514 6.514 11 N -0.650 5.650 12 C 0.036 3.964 13 C -0.067 4.067 14 C -0.179 4.179 15 C 0.155 3.845 16 O -0.214 6.214 17 C -0.390 4.390 18 H 0.107 0.893 19 C 0.064 3.936 20 N -0.877 5.877 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.207 4.207 26 C -0.087 4.087 27 C -0.110 4.110 28 C -0.030 4.030 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.403 0.597 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.280 0.720 38 H 0.139 0.861 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.227 5.817 -26.752 31.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.679 3.321 3 O -0.932 6.932 4 O -0.932 6.932 5 C -0.732 4.732 6 C -0.049 4.049 7 C -0.102 4.102 8 C -0.074 4.074 9 C 0.330 3.670 10 O -0.390 6.390 11 N -0.294 5.294 12 C -0.056 4.056 13 C -0.087 4.087 14 C -0.199 4.199 15 C 0.102 3.898 16 O -0.118 6.118 17 C -0.466 4.466 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.515 5.515 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.226 4.226 26 C -0.107 4.107 27 C -0.130 4.130 28 C -0.049 4.049 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.239 0.761 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.090 0.910 38 H 0.157 0.843 39 H 0.132 0.868 40 H 0.156 0.844 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.451 5.038 -26.936 30.980 hybrid contribution -0.488 -0.226 1.158 1.276 sum -14.939 4.812 -25.778 30.180 Atomic orbital electron populations 1.30218 1.25325 1.12308 1.12063 1.05235 0.77985 0.74679 0.74184 1.93601 1.77341 1.36368 1.85893 1.93606 1.77334 1.61607 1.60636 1.30769 1.17130 1.03054 1.22219 1.20970 0.93040 0.93210 0.97696 1.21460 0.96331 1.01121 0.91241 1.20390 0.98518 0.94246 0.94231 1.18261 0.78404 0.86583 0.83770 1.90805 1.49449 1.14867 1.83902 1.43104 1.65694 1.11241 1.09383 1.17268 1.04354 0.97205 0.86802 1.20728 0.98834 0.94656 0.94490 1.20144 1.03080 1.01274 0.95356 1.19173 0.92255 0.91865 0.86472 1.83581 1.62855 1.40776 1.24614 1.20765 1.30469 0.99527 0.95808 0.87559 1.24477 0.95593 0.99301 0.94613 1.69651 1.35723 1.36062 1.10024 0.86170 0.80361 0.82632 0.77708 1.19827 1.20771 1.18288 1.21103 1.06172 0.97688 0.97685 1.20543 0.96295 0.99195 0.94682 1.21488 0.99054 0.94350 0.98082 1.20899 0.93112 0.99784 0.91103 0.84810 0.84837 0.84799 0.83286 0.83365 0.76099 0.85163 0.86001 0.90971 0.84347 0.86759 0.84404 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -0.84 10.80 101.05 1.09 0.25 16 2 S 2.50 13.40 5.80 -107.50 -0.62 12.77 16 3 O -0.93 -8.00 17.11 -57.54 -0.98 -8.99 16 4 O -0.93 -8.15 17.11 -57.54 -0.98 -9.14 16 5 C -0.65 -4.25 5.66 -39.49 -0.22 -4.47 16 6 C -0.03 -0.22 9.45 -39.64 -0.37 -0.59 16 7 C -0.08 -0.75 9.60 -39.18 -0.38 -1.12 16 8 C -0.07 -0.70 5.87 -104.97 -0.62 -1.32 16 9 C 0.54 7.14 7.61 -12.35 -0.09 7.05 16 10 O -0.51 -8.57 13.81 5.31 0.07 -8.50 16 11 N -0.65 -8.11 5.28 -10.69 -0.06 -8.17 16 12 C 0.04 0.59 6.29 -83.65 -0.53 0.06 16 13 C -0.07 -1.22 8.68 -39.41 -0.34 -1.56 16 14 C -0.18 -3.58 9.98 -39.42 -0.39 -3.98 16 15 C 0.16 3.51 6.65 -39.09 -0.26 3.25 16 16 O -0.21 -5.53 8.58 0.03 0.00 -5.53 16 17 C -0.39 -10.74 9.94 30.88 0.31 -10.43 16 18 H 0.11 2.96 5.43 -52.49 -0.28 2.67 16 19 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 20 N -0.88 -24.85 13.96 55.48 0.77 -24.08 16 21 Si 0.91 21.38 28.62 -169.99 -4.86 16.52 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.21 -4.25 9.16 -39.42 -0.36 -4.61 16 26 C -0.09 -1.47 9.96 -39.41 -0.39 -1.86 16 27 C -0.11 -0.81 9.54 -39.18 -0.37 -1.18 16 28 C -0.03 -0.20 9.45 -39.64 -0.37 -0.57 16 29 H 0.13 -0.01 8.14 -51.92 -0.42 -0.43 16 30 H 0.13 0.01 8.14 -51.93 -0.42 -0.42 16 31 H 0.13 0.00 8.14 -51.92 -0.42 -0.42 16 32 H 0.15 0.77 7.56 -52.48 -0.40 0.38 16 33 H 0.15 1.33 7.65 -52.49 -0.40 0.93 16 34 H 0.40 3.50 6.87 -40.82 -0.28 3.22 16 35 H 0.13 2.28 6.25 -52.49 -0.33 1.95 16 36 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 37 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.14 2.96 5.63 -52.49 -0.30 2.66 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.14 0.66 6.41 -52.49 -0.34 0.32 16 41 H 0.15 0.64 7.56 -52.49 -0.40 0.24 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -37.07 367.94 -8.50 -45.57 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -3.97 Total: 3.43 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -3.41 Total: -19.43 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.72 Total: -32.25 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.90 Total: -32.15 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.86 Total: 16.52 kcal Atomic # 16 Polarization: 13.40 SS G_CDS: -0.62 Total: 12.77 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.07 -8.50 -45.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.531 kcal (2) G-P(sol) polarization free energy of solvation -37.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds